Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8152832.1

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 569

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8152832.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 568 bp

atgaagcgagtggtggttgagaagggggagaaaattgatggcttggagaaggagcttgagactctgaagaaattgaaagctgagagcgagaagagggttagggaattggagaggaatattggggttctggaggtgaaggaaatagaggagaggagcaagagggttagggcggaggaggaaatgagagagaggcttgaagcgaaagatggtgaagtttgtttgttcaaaaagaaaattgaggagttggaatcggtgattgggaagaatggtgttgaactgcagaagtggatgcagggaaagagcaatgttgaggtagcgttgagggaatccgaggagaagtcaaaagctatggagttgaagatgggacaactgcagaaggatgtggtggacgccggaagggttattaatgaattgaaggagaagactgttggggtcattaatgggactgtgaatgaaatgaaggagattttggaaggcggaaatgagacgggatcaaagggattgagcttgcctgtggttgcagggtctgctggagccattgttgctgtggcggctgttgtcttcgtgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.0

Weight (kDa)

5.67

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	170, 477, 551
AclWI	GGATC	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	390
AgsI	TTSAA	6 cut(s)	76, 197, 226, 275, 358, 415
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 452, 484
AluBI	AGCT	4 cut(s)	55, 80, 347, 507
AluI	AGCT	4 cut(s)	55, 80, 347, 507
Alw26I	GTCTC	2 cut(s)	53, 479
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	527
AseI	ATTAAT	2 cut(s)	405, 438
AsuHPI	GGTGA	3 cut(s)	145, 221, 265
BbsI	GAAGAC	2 cut(s)	428, 553
BccI	CCATC	3 cut(s)	32, 200, 355
BcoDI	GTCTC	2 cut(s)	53, 479
BfmI	CTRYAG	2 cut(s)	278, 371
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmiI	GGNNCC	1 cut(s)	535
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	428, 553
BpmI	CTGGAG	2 cut(s)	149, 552
BpuEI	CTTGAG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	294, 385
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	5 cut(s)	161, 166, 188, 254, 347
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	378, 457
BsmAI	GTCTC	2 cut(s)	53, 479
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	378, 457
Bsp143I	GATC	1 cut(s)	491
BspACI	CCGC	3 cut(s)	170, 477, 551
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	535
BspMAI	CTGCAG	2 cut(s)	282, 375
BspPI	GGATC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	491
BssNI	GRCGYC	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	427, 448
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	294, 385
BstKTI	GATC	1 cut(s)	494
BstMAI	GTCTC	2 cut(s)	53, 479
BstMBI	GATC	1 cut(s)	491
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 542, 551
BstSFI	CTRYAG	2 cut(s)	278, 371
BstV2I	GAAGAC	2 cut(s)	428, 553
BtsCI	GGATG	2 cut(s)	294, 385
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	527
CseI	GACGC	1 cut(s)	398
CviJI	RGCY	8 cut(s)	42, 55, 80, 193, 347, 507, 536, 554
CviKI_1	RGCY	8 cut(s)	42, 55, 80, 193, 347, 507, 536, 554
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	493
DpnII	GATC	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	185, 492
Eco57I	CTGAAG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	479
FaiI	YATR	1 cut(s)	350
FaqI	GGGAC	2 cut(s)	378, 457
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	2 cut(s)	301, 392
Fsp4HI	GCNGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	552
GsuI	CTGGAG	2 cut(s)	149, 552
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	390
HinfI	GANTC	3 cut(s)	61, 248, 326
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	145, 221, 265
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	66, 331
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	8 cut(s)	16, 43, 130, 370, 390, 409, 454, 467
HpyCH4III	ACNGT	2 cut(s)	427, 448
HpyCH4V	TGCA	4 cut(s)	280, 292, 373, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 542, 551
HpyF3I	CTNAG	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	491
LmnI	GCTCC	3 cut(s)	52, 153, 533
LpnPI	CCDG	6 cut(s)	113, 278, 406, 507, 516, 525
LweI	GCATC	1 cut(s)	279
MalI	GATC	1 cut(s)	493
MboI	GATC	1 cut(s)	491
MboII	GAAGA	6 cut(s)	79, 103, 274, 370, 433, 553
MluCI	AATT	5 cut(s)	33, 71, 104, 234, 410
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	225
MseI	TTAA	2 cut(s)	405, 438
MspI	CCGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	527, 542, 551
NdeII	GATC	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	248, 326
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PshBI	ATTAAT	2 cut(s)	405, 438
PspN4I	GGNNCC	1 cut(s)	535
PstI	CTGCAG	2 cut(s)	282, 375
PstNI	CAGNNNCTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	405, 438
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	55
SetI	ASST	6 cut(s)	57, 82, 135, 315, 349, 509
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	278, 371
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	33, 71, 104, 234, 410
SsiI	CCGC	3 cut(s)	170, 477, 551
SspI	AATATT	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	427, 448
TasI	AATT	5 cut(s)	33, 71, 104, 234, 410
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	248, 326
Tru1I	TTAA	2 cut(s)	405, 438
Tru9I	TTAA	2 cut(s)	405, 438
TspDTI	ATGAA	4 cut(s)	17, 423, 468, 473
VspI	ATTAAT	2 cut(s)	405, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.