Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Reverse (-)

19057827 .. 19059542

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAGACGAGAAGACGGTTGAAATCGTCGACGATACTGAGGCCTTCTACGATGCCGATCAGACGGCGGAAATGGGCCGGAAGATCGAGGGTTTGGAGCGGGAGAAGCTGCAGTTGGAGCGCGATAACAAAGAAAGCAATGAGAAAATCAAGGAACTGACGACGGAGATCGAGAAGTTGAAGAGAGGCGAGAAGGACACGAAGGAGAAGCTCCGGGAGATGGAGTTGGAGATCGAACGGAACGACGAGGGAAAAAATGTTCTGGAATCGGTTGCGAATAGAGCGATGGAGCTTGAGACTGAGGTATCGAGGCTCCAACAAGAACTGATCTCGGCGATGGCCGAAGTGGAGGAGGCGAATAACGAAGTTGCGGAGCTGAAGCGTGTTTTGGGAGAGAAAGGAGCGAAAATTGATAGATTGGAGAAAGAGCTTGAGAGCCTGAAGAAGGCCAAAGCTGAGAGCGAGAAGTGGGTTAGGGAATTGGAGAGGAAGATTGGGGTTTTGGAAGTGAAGGAAACTGAGGAGAAGAGCAAGAGAATTAGGGTTGAGGAGGAGATGAGGGAGAGACTTGATGAGAAAGAGAATGAGCTTAGTTTGTTCAAGAAGAAAATTGAGGAATTGGAGTCGGTGATCACTAAGAACGGTGTTGAATTGGGGAAGAAAGTGAAGGAGACTCTCGATGTCGAGGCGGCATTGAGGGAATCGGAGGACAAGTGCAGAGCCGTGGAACTGAAGATGGGACAATTGCAGAAGGATGTGGTGGAGGCTAACAAGGTTATTAATGGATTGAGGGAGAGGACTGTTGGGGCCATTAATGGGACTGTGGATGAAATGAAGGAGATTTTGGAAGGCGGAGAGACGGGTCCAAAGGGATTGAGCTTGCCAGTTGTTGCAGGGTCTACTGGTGCCATTGTTGCCGTGGCAGCTGCTGCCGTCTATGTGTTGTATCTAAGGCCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.28

Weight (kDa)

4.92

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	905
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	2 cut(s)	30, 899
AccII	CGCG	1 cut(s)	123
AciI	CCGC	5 cut(s)	68, 100, 371, 689, 852
AcoI	YGGCCR	1 cut(s)	339
AcuI	CTGAAG	3 cut(s)	398, 461, 752
AfiI	CCNNNNNNNGG	3 cut(s)	220, 445, 816
AgsI	TTSAA	4 cut(s)	23, 181, 601, 650
AjuI	GAANNNNNNNTTGG	6 cut(s)	98, 130, 371, 403, 827, 859
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	9 cut(s)	109, 211, 292, 376, 430, 455, 589, 879, 926
AluI	AGCT	9 cut(s)	109, 211, 292, 376, 430, 455, 589, 879, 926
Alw26I	GTCTC	4 cut(s)	290, 559, 665, 851
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	6 cut(s)	42, 76, 339, 447, 807, 953
ApeKI	GCWGC	4 cut(s)	109, 923, 926, 929
AseI	ATTAAT	2 cut(s)	780, 813
AspA2I	CCTAGG	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	76, 807, 863
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	863
AvrII	CCTAGG	1 cut(s)	956
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	96, 913, 916, 935
BccI	CCATC	4 cut(s)	214, 280, 331, 730
BceAI	ACGGC	4 cut(s)	81, 707, 902, 917
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	290, 559, 665, 851
BfaI	CTAG	1 cut(s)	957
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	5 cut(s)	110, 690, 924, 927, 930
BlnI	CCTAGG	1 cut(s)	956
BlsI	GCNGC	5 cut(s)	111, 691, 925, 928, 931
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	863
BmgT120I	GGNCC	3 cut(s)	76, 807, 863
BmiI	GGNNCC	4 cut(s)	314, 808, 864, 907
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	314, 452
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	723, 918, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 698, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 445, 816
Bse1I	ACTGG	2 cut(s)	884, 907
Bse3DI	GCAATG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	723, 918, 956
BseGI	GGATG	2 cut(s)	760, 832
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	220, 445, 816
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	4 cut(s)	30, 291, 447, 510
BseNI	ACTGG	2 cut(s)	884, 907
BseRI	GAGGAG	4 cut(s)	365, 536, 563, 566
BseXI	GCAGC	4 cut(s)	96, 913, 916, 935
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	6 cut(s)	44, 78, 341, 449, 809, 955
BshNI	GGYRCC	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	79, 214
BslFI	GGGAC	2 cut(s)	753, 832
BslI	CCNNNNNNNGG	3 cut(s)	220, 445, 816
BsmAI	GTCTC	4 cut(s)	290, 559, 665, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	2 cut(s)	753, 832
BsnI	GGCC	6 cut(s)	44, 78, 341, 449, 809, 955
Bsp143I	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
BspACI	CCGC	5 cut(s)	68, 100, 371, 689, 852
BspANI	GGCC	6 cut(s)	44, 78, 341, 449, 809, 955
BspCNI	CTCAG	4 cut(s)	31, 292, 448, 511
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	314, 808, 864, 907
BspMAI	CTGCAG	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	884, 907
BssECI	CCNNGG	3 cut(s)	723, 918, 956
BssMI	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
BssT1I	CCWWGG	1 cut(s)	956
Bst4CI	ACNGT	4 cut(s)	19, 644, 802, 823
Bst6I	CTCTTC	2 cut(s)	176, 521
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	7 cut(s)	39, 300, 456, 519, 590, 636, 950
BstDSI	CCRYGG	2 cut(s)	723, 918
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	760, 832
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	6 cut(s)	61, 87, 171, 234, 330, 633
BstMAI	GTCTC	4 cut(s)	290, 559, 665, 851
BstMBI	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 118, 281, 914, 923, 929
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	96, 913, 916, 935
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	6 cut(s)	44, 78, 341, 449, 809, 955
BtgI	CCRYGG	2 cut(s)	723, 918
BtgZI	GCGATG	2 cut(s)	299, 350
BtsCI	GGATG	2 cut(s)	760, 832
Cac8I	GCNNGC	1 cut(s)	881
CaiI	CAGNNNCTG	1 cut(s)	929
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	76, 807, 863
DdeI	CTNAG	7 cut(s)	39, 300, 456, 519, 590, 636, 950
DpnI	GATC	6 cut(s)	60, 86, 170, 233, 329, 632
DpnII	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	176, 521
EarI	CTCTTC	2 cut(s)	176, 521
EciI	GGCGGA	2 cut(s)	83, 867
Eco130I	CCWWGG	1 cut(s)	956
Eco147I	AGGCCT	2 cut(s)	44, 955
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	3 cut(s)	398, 461, 752
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	956
ErhI	CCWWGG	1 cut(s)	956
Esp3I	CGTCTC	1 cut(s)	851
FaiI	YATR	1 cut(s)	939
FaqI	GGGAC	2 cut(s)	753, 832
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	2 cut(s)	30, 899
Fnu4HI	GCNGC	5 cut(s)	110, 690, 924, 927, 930
FokI	GGATG	2 cut(s)	767, 839
Fsp4HI	GCNGC	5 cut(s)	110, 690, 924, 927, 930
FspBI	CTAG	1 cut(s)	957
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	110, 690, 924, 927, 930
HaeIII	GGCC	6 cut(s)	44, 78, 341, 449, 809, 955
HapII	CCGG	2 cut(s)	79, 214
HhaI	GCGC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	266, 623, 673, 701
HpaII	CCGG	2 cut(s)	79, 214
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	2 cut(s)	31, 900
Hpy188I	TCNGA	2 cut(s)	63, 706
Hpy188III	TCNNGA	4 cut(s)	172, 263, 601, 677
Hpy8I	GTNNAC	2 cut(s)	31, 900
Hpy99I	CGWCG	4 cut(s)	32, 35, 166, 248
HpyAV	CCTTC	9 cut(s)	55, 187, 196, 439, 505, 661, 745, 829, 842
HpyCH4III	ACNGT	4 cut(s)	19, 644, 802, 823
HpyCH4V	TGCA	4 cut(s)	112, 717, 748, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 118, 281, 914, 923, 929
HpyF3I	CTNAG	7 cut(s)	39, 300, 456, 519, 590, 636, 950
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	7 cut(s)	97, 118, 216, 289, 318, 373, 401
LpnPI	CCDG	7 cut(s)	92, 227, 248, 452, 879, 888, 897
Lsp1109I	GCAGC	4 cut(s)	96, 913, 916, 935
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	957
MalI	GATC	6 cut(s)	60, 86, 170, 233, 329, 632
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
MboII	GAAGA	9 cut(s)	25, 94, 193, 454, 502, 538, 616, 670, 745
MfeI	CAATTG	1 cut(s)	743
MluCI	AATT	7 cut(s)	408, 479, 537, 609, 617, 650, 743
MlyI	GAGTC	2 cut(s)	632, 667
MmeI	TCCRAC	3 cut(s)	96, 207, 340
MseI	TTAA	2 cut(s)	780, 813
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	2 cut(s)	79, 214
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	743
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	6 cut(s)	106, 118, 281, 914, 923, 929
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
NlaIV	GGNNCC	4 cut(s)	314, 808, 864, 907
NmeAIII	GCCGAG	1 cut(s)	311
PceI	AGGCCT	2 cut(s)	44, 955
PciSI	GCTCTTC	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	266, 701
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	111, 691, 925, 928, 931
PleI	GAGTC	2 cut(s)	631, 667
PpsI	GAGTC	2 cut(s)	631, 667
PshBI	ATTAAT	2 cut(s)	780, 813
PspN4I	GGNNCC	4 cut(s)	314, 808, 864, 907
PspPI	GGNCC	3 cut(s)	76, 807, 863
PstI	CTGCAG	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	926
SalI	GTCGAC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	780, 813
SatI	GCNGC	5 cut(s)	110, 690, 924, 927, 930
Sau3AI	GATC	6 cut(s)	58, 84, 168, 231, 327, 630
Sau96I	GGNCC	3 cut(s)	76, 807, 863
SchI	GAGTC	2 cut(s)	632, 667
ScrFI	CCNGG	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	110
SgrDI	CGTCGACG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	863
SmlI	CTYRAG	2 cut(s)	293, 431
SmoI	CTYRAG	2 cut(s)	293, 431
Sse9I	AATT	7 cut(s)	408, 479, 537, 609, 617, 650, 743
SseBI	AGGCCT	2 cut(s)	44, 955
SsiI	CCGC	5 cut(s)	68, 100, 371, 689, 852
SspMI	CTAG	1 cut(s)	957
StuI	AGGCCT	2 cut(s)	44, 955
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	4 cut(s)	19, 644, 802, 823
TaqI	TCGA	7 cut(s)	30, 87, 171, 234, 308, 678, 684
TasI	AATT	7 cut(s)	408, 479, 537, 609, 617, 650, 743
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	266, 701
Tru1I	TTAA	2 cut(s)	780, 813
Tru9I	TTAA	2 cut(s)	780, 813
TseI	GCWGC	4 cut(s)	109, 923, 926, 929
TspDTI	ATGAA	2 cut(s)	843, 848
TspGWI	ACGGA	2 cut(s)	179, 253
VpaK11BI	GGWCC	1 cut(s)	863
VspI	ATTAAT	2 cut(s)	780, 813
XagI	CCTNNNNNAGG	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XmaJI	CCTAGG	1 cut(s)	956
XmiI	GTMKAC	2 cut(s)	30, 899
XspI	CTAG	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.