Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009591

Physical Location & Seq

Genomic Coordinates Forward (+)

2105048 .. 2106749

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGAAATCAGATCCTCCACCAGTCCCAAAGCCCGGCGCCACTATTATCCCCTCCTCCGATCCAATTCCTAATGCCGATCCGATTCCATCTTCTTCCTTCCACCGCCGATCTCGCTCCGACGATATGTCCATGTTCATGTTCATGGATCCCCTCTCCTCCGCCGCACCACCTTCCTCCGACGACCTTCCCTCCGACGACGATCTCTTCTCTTCTTTCATCGATGTCGATAGCCTCACCTCTAATCCCAATCCCTTTCAAAATCCTTCCCTCTCCTCCAACTCCGTTTCCGGCGCTGCTAATCCTCCTCCTCCTCCTTCCTCTCGTCCTCGCCACCGTCACAGCAATTCCGTTGACGCTGGATGCGCCATGTATGCCGGTGATATCATGGACGCTAAGAAAGCTATGCCTCCTGAAAAACTCTCTGAGCTTTGGAACATCGATCCCAAACGCGCCAAAAGGATTCTAGCGAATCGACAATCTGCAGCTCGATCCAAAGAGAGAAAAGCTCGATACATTCAAGAACTTGAGCGCAAAGTTCAATCTCTTCAAACCGAAGCTACCACTCTCTCTGCTCAGCTTACTCTCTACCAGAGAGACACAAATGGACTAGCAAACGAAAACACAGAGCTGAAACTTAGGTTGCAAGCAATGGAACAACAAGCTCAGCTTCGTAATGCTTTAAACGAAGCGTTGAGGAAAGAAGTTGAAAGGATGAAGATGGAGACAGGAGAAATCTCTGGTAATTCAGATTCGTTTGATATGGGAATGCAGCAGATTCAGTATTCTTCCTCAACTTTCATGGCTATTCCACCATATCATGGCTCAATGAACCTCCATGATATGCAGATGCATTCTAGTTTCAATCCTATGGAGATGTCCAATTCTCAAAGCGTGTCGGACTTTCTACAGAACGGCCGAATGCAAGGGCTGGAGATTAGTAGCAATAGCTCAAGCTTAGTCAAATCTGAAGGACCTTCTCTCTCTGCTAGTGAGAGTAGCTCTGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

337

Amino Acids

37.05

Weight (kDa)

5.35

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	148 - 199	6.6e-07	Basic region leucine zipper
bZIP_1	PF00170	150 - 204	2.4e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06850 AT1G06850 AT2G40620
fragaria_vesca	FvH4_7g25870
malus_domestica	MD01G1167000.v1.1 MD07G1233200.v1.1
prunus_persica	Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1
pyrus_communis	pycom01g18010 pycom07g21100
rosa_chinensis	RchiOBHm_Chr1g0372151
rosa_laevigata	RLG00000018975 RLG00000026918
rosa_multiflora	Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285180
rosa_rugosa	Rorug01G0370000
rosa_samantha	Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900
rosa_wichuraiana	Rw1G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	821
AccII	CGCG	1 cut(s)	453
AciI	CCGC	3 cut(s)	106, 162, 165
AclWI	GGATC	7 cut(s)	8, 56, 74, 143, 156, 437, 486
AcoI	YGGCCR	1 cut(s)	916
AcuI	CTGAAG	1 cut(s)	990
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	35, 821
AgsI	TTSAA	6 cut(s)	260, 521, 542, 551, 710, 865
AhdI	GACNNNNNGTC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	591, 719
AlwI	GGATC	7 cut(s)	8, 56, 74, 143, 156, 437, 486
AoxI	GGCC	1 cut(s)	916
ApeKI	GCWGC	3 cut(s)	296, 485, 772
AspLEI	GCGC	5 cut(s)	41, 296, 368, 455, 534
AspS9I	GGNCC	1 cut(s)	974
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	229, 392
AvaII	GGWCC	1 cut(s)	974
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	283, 497, 784
BccI	CCATC	2 cut(s)	97, 715
BceAI	ACGGC	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	591, 719
BfaI	CTAG	4 cut(s)	467, 611, 858, 990
BfmI	CTRYAG	2 cut(s)	483, 908
BfoI	RGCGCY	2 cut(s)	42, 297
BisI	GCNGC	4 cut(s)	165, 297, 486, 773
BlpI	GCTNAGC	2 cut(s)	576, 666
BlsI	GCNGC	4 cut(s)	166, 298, 487, 774
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	974
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	974
BmiI	GGNNCC	2 cut(s)	40, 150
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	353, 840
BplI	GAGNNNNNCTC	3 cut(s)	493, 525, 986
BpmI	CTGGAG	1 cut(s)	953
Bpu1102I	GCTNAGC	2 cut(s)	576, 666
BpuEI	CTTGAG	2 cut(s)	548, 937
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	2 cut(s)	222, 441
BsaHI	GRCGYC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 821
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	657
BseCI	ATCGAT	2 cut(s)	222, 441
BseGI	GGATG	2 cut(s)	368, 720
BseLI	CCNNNNNNNGG	2 cut(s)	35, 821
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	3 cut(s)	417, 590, 680
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	6 cut(s)	46, 148, 265, 297, 300, 303
BseX3I	CGGCCG	1 cut(s)	916
BseXI	GCAGC	3 cut(s)	283, 497, 784
Bsh1236I	CGCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	919
BshFI	GGCC	1 cut(s)	918
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	2 cut(s)	222, 441
BsiEI	CGRYCG	1 cut(s)	919
BsiSI	CCGG	3 cut(s)	36, 291, 378
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	35, 821
BsmAI	GTCTC	2 cut(s)	591, 719
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	3 cut(s)	774, 853, 927
BsnI	GGCC	1 cut(s)	918
Bsp143I	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
Bsp1720I	GCTNAGC	2 cut(s)	576, 666
BspACI	CCGC	3 cut(s)	106, 162, 165
BspANI	GGCC	1 cut(s)	918
BspCNI	CTCAG	3 cut(s)	418, 589, 679
BspDI	ATCGAT	2 cut(s)	222, 441
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	40, 150
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	7 cut(s)	8, 56, 74, 143, 156, 437, 486
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	377
BssMI	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	3 cut(s)	212, 217, 552
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	6 cut(s)	396, 426, 576, 638, 666, 958
BstF5I	GGATG	2 cut(s)	368, 720
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	2 cut(s)	42, 297
BstHHI	GCGC	5 cut(s)	41, 296, 368, 455, 534
BstKTI	GATC	8 cut(s)	16, 64, 82, 113, 151, 205, 445, 494
BstMAI	GTCTC	2 cut(s)	591, 719
BstMBI	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
BstMCI	CGRYCG	1 cut(s)	919
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 365, 374, 401
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	483, 908
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	283, 497, 784
BstX2I	RGATCY	2 cut(s)	13, 148
BstYI	RGATCY	2 cut(s)	13, 148
BstZI	CGGCCG	1 cut(s)	916
Bsu15I	ATCGAT	2 cut(s)	222, 441
BsuRI	GGCC	1 cut(s)	918
BsuTUI	ATCGAT	2 cut(s)	222, 441
BtsCI	GGATG	2 cut(s)	368, 720
Cac8I	GCNNGC	1 cut(s)	648
CfoI	GCGC	5 cut(s)	41, 296, 368, 455, 534
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	974
ClaI	ATCGAT	2 cut(s)	222, 441
CseI	GACGC	2 cut(s)	365, 401
CviAII	CATG	8 cut(s)	133, 139, 145, 370, 388, 802, 821, 839
DdeI	CTNAG	6 cut(s)	396, 426, 576, 638, 666, 958
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	8 cut(s)	15, 63, 81, 112, 150, 204, 444, 493
DpnII	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
DraI	TTTAAA	1 cut(s)	684
DriI	GACNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	916
EagI	CGGCCG	1 cut(s)	916
Eam1104I	CTCTTC	3 cut(s)	212, 217, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	3 cut(s)	212, 217, 552
EciI	GGCGGA	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	916
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	974
Eco52I	CGGCCG	1 cut(s)	916
Eco57I	CTGAAG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	974
EcoRV	GATATC	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	855
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	8 cut(s)	136, 142, 148, 373, 391, 805, 824, 842
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	8 cut(s)	132, 138, 144, 369, 387, 801, 820, 838
Fnu4HI	GCNGC	4 cut(s)	165, 297, 486, 773
FokI	GGATG	2 cut(s)	375, 727
Fsp4HI	GCNGC	4 cut(s)	165, 297, 486, 773
FspBI	CTAG	4 cut(s)	467, 611, 858, 990
GlaI	GCGC	5 cut(s)	40, 295, 367, 454, 533
GluI	GCNGC	4 cut(s)	165, 297, 486, 773
GsuI	CTGGAG	1 cut(s)	953
HaeII	RGCGCY	2 cut(s)	42, 297
HaeIII	GGCC	1 cut(s)	918
HapII	CCGG	3 cut(s)	36, 291, 378
HgaI	GACGC	2 cut(s)	365, 401
HhaI	GCGC	5 cut(s)	41, 296, 368, 455, 534
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	8 cut(s)	136, 142, 148, 373, 391, 805, 824, 842
Hin6I	GCGC	5 cut(s)	39, 294, 366, 453, 532
HinP1I	GCGC	5 cut(s)	39, 294, 366, 453, 532
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	955
HinfI	GANTC	5 cut(s)	85, 463, 472, 752, 778
HpaII	CCGG	3 cut(s)	36, 291, 378
HphI	GGTGA	2 cut(s)	229, 392
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	413, 521
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	4 cut(s)	125, 185, 200, 203
HpyAV	CCTTC	7 cut(s)	109, 183, 197, 276, 327, 965, 987
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	6 cut(s)	485, 646, 772, 847, 853, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 365, 374, 401
HpyF3I	CTNAG	6 cut(s)	396, 426, 576, 638, 666, 958
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	8 cut(s)	136, 142, 148, 373, 391, 805, 824, 842
HspAI	GCGC	5 cut(s)	39, 294, 366, 453, 532
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	283, 497, 784
LweI	GCATC	2 cut(s)	353, 840
MaeI	CTAG	4 cut(s)	467, 611, 858, 990
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	8 cut(s)	15, 63, 81, 112, 150, 204, 444, 493
MboI	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
MboII	GAAGA	7 cut(s)	84, 87, 199, 204, 539, 730, 780
MflI	RGATCY	2 cut(s)	13, 148
MluCI	AATT	4 cut(s)	66, 346, 745, 883
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	5 cut(s)	144, 204, 219, 303, 879
Mph1103I	ATGCAT	1 cut(s)	855
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	2 cut(s)	137, 143
MspI	CCGG	3 cut(s)	36, 291, 378
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	3 cut(s)	774, 853, 927
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	114, 365, 374, 401
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
NlaIII	CATG	8 cut(s)	136, 142, 148, 373, 391, 805, 824, 842
NlaIV	GGNNCC	2 cut(s)	40, 150
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	855
PctI	GAATGC	3 cut(s)	774, 853, 927
PfeI	GAWTC	5 cut(s)	85, 463, 472, 752, 778
PflMI	CCANNNNNTGG	1 cut(s)	821
PkrI	GCNGC	4 cut(s)	166, 298, 487, 774
PluTI	GGCGCC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	974
PspN4I	GGNNCC	2 cut(s)	40, 150
PspPI	GGNCC	1 cut(s)	974
PspPPI	RGGWCCY	1 cut(s)	974
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	13, 148
RseI	CAYNNNNRTG	2 cut(s)	137, 143
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	4 cut(s)	165, 297, 486, 773
Sau3AI	GATC	8 cut(s)	13, 61, 79, 110, 148, 202, 442, 491
Sau96I	GGNCC	1 cut(s)	974
ScrFI	CCNGG	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	353, 840
SfcI	CTRYAG	2 cut(s)	483, 908
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	974
SmiMI	CAYNNNNRTG	2 cut(s)	137, 143
SmlI	CTYRAG	2 cut(s)	527, 952
SmoI	CTYRAG	2 cut(s)	527, 952
Sse9I	AATT	4 cut(s)	66, 346, 745, 883
SsiI	CCGC	3 cut(s)	106, 162, 165
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	4 cut(s)	467, 611, 858, 990
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	6 cut(s)	222, 228, 441, 475, 490, 511
TasI	AATT	4 cut(s)	66, 346, 745, 883
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	5 cut(s)	85, 463, 472, 752, 778
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	296, 485, 772
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	6 cut(s)	127, 133, 208, 731, 790, 845
TspGWI	ACGGA	2 cut(s)	274, 340
Van91I	CCANNNNNTGG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	974
XspI	CTAG	4 cut(s)	467, 611, 858, 990
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.