MD01G1167000.v1.1
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
27175383 .. 27178453
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1167000.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGCAAGATCCGGTCAACCCGAAACCGGATCCGAGCTCCAGCTCTCAGGACTCTCAGCGCCCACGCATGGCGCCGCCGTTTCAGGACGCCACTCCGAGCCTTCCTTTCCGGGGCTCCTACCACCGTCGAGCCCAATCCGAGGTCCATTTCCGGATCCCCGACGACCTGGATCTGCTCCAGGACCCGTTCGACGGCCCGTCCGGCAGATTCGAGGAGCTGGGGGGCTCCGAGGAAGATATCTTCGGCACCTACATGGACATGGAGAAGCTCGGATCCAAACTCGACGACGGGCCCTCCGACCTGAAACCCGAGAATGCCGGCGGTTCCCTGCAGTCGGAGGGCGGCGGGTTTGGTGGAGATATGAGCGCGAGGCCGAGACATCGTCATAGCAACTCCGTGGACGCGTCTTTGGATAGCATAGAGGCTAAGAAGGCCATGGCTCCCGATAAGCTGGCCGAGCTCTGGACCGTCGATCCCAAACGAGCTAAGAGGATTTTGGCAAATCGGCAGTCTGCAGCTCGGTCAAAAGAGAGGAAGGCCCGGTACATATCAGAACTTGAAAGAAAAGTTCAGACGCTACAAACAGAAGCTACTACTCTATCAGCACAGCTCACTTTGTTCCAGAGAGACACATCGGGCTTATCTTCTGAGAACACAGAGCTTAAGCTTCGGGTGCAAGCTATGGAACAACAAGCTCAATTACGTGATGCTCTCAATGATGCACTGAAGAAAGAACTTGAGAGGCTCAAGGTTGCAACTGGAGAACAATTAACACACATTGATTCATACAATCTGGGAATGCACCATTTTCCATATTCGCAGTCCCCCTTCTTTCCCAGTCAGTCACAGACCGGGTCACGGGATTCCCAGAACATTCACATGCCACAGTTCCATCAATTCCAGCCTAATATGTCAGCTCCCCATCAACCTATGCTTGGATCATCCCTGTCACATGCCTGCTTAGATATGTCACAGCAGGATCCTATTGGCCGATTTCAGGGGCTTGACATCAATAACAGAGGTTCTCATCTAGTAAGGCCTGAAGGGCCCTCAATATCTGCCGGCGAAAGTAACAGAAGATTTTAA

Protein Analysis

362

Amino Acids

40.18

Weight (kDa)

6.08

Isoelectric Point (pI)

71.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 158 - 207 3.1e-06 Basic region leucine zipper
bZIP_1 PF00170 160 - 218 3e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 245
AccII CGCG 2 cut(s) 368, 404
AccIII TCCGGA 1 cut(s) 150
AciI CCGC 4 cut(s) 74, 321, 342, 345
AcoI YGGCCR 2 cut(s) 453, 988
AcuI CTGAAG 2 cut(s) 746, 1062
AcyI GRCGYC 2 cut(s) 71, 87
AfaI GTAC 1 cut(s) 545
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 560
AhdI GACNNNNNGTC 1 cut(s) 196
AjnI CCWGG 2 cut(s) 165, 177
Alw21I GWGCWC 2 cut(s) 38, 462
Alw26I GTCTC 2 cut(s) 370, 621
Ama87I CYCGRG 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 9 cut(s) 193, 290, 371, 432, 453, 537, 988, 1037, 1046
ApaI GGGCCC 2 cut(s) 294, 1050
ApeKI GCWGC 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 3 cut(s) 60, 73, 368
AspS9I GGNCC 9 cut(s) 142, 181, 194, 290, 291, 465, 538, 1046, 1047
AsuC2I CCSGG 3 cut(s) 110, 541, 853
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 3 cut(s) 142, 181, 465
BaeGI GKGCMC 2 cut(s) 294, 1050
BamHI GGATCC 4 cut(s) 28, 153, 272, 979
BanI GGYRCC 2 cut(s) 70, 245
BanII GRGCYC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
BarI GAAGNNNNNNTAC 2 cut(s) 527, 559
Bbv12I GWGCWC 2 cut(s) 38, 462
BbvI GCAGC 1 cut(s) 527
BccI CCATC 2 cut(s) 900, 930
BceAI ACGGC 2 cut(s) 61, 208
BciT130I CCWGG 2 cut(s) 167, 179
BcnI CCSGG 3 cut(s) 110, 541, 853
BcoDI GTCTC 2 cut(s) 370, 621
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 2 cut(s) 329, 513
BfoI RGCGCY 2 cut(s) 61, 74
BfrI CTTAAG 1 cut(s) 662
BglI GCCNNNNNGGC 2 cut(s) 201, 1045
BisI GCNGC 3 cut(s) 74, 343, 516
BlsI GCNGC 3 cut(s) 75, 344, 517
Bme1390I CCNGG 5 cut(s) 110, 167, 179, 541, 853
Bme18I GGWCC 3 cut(s) 142, 181, 465
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 9 cut(s) 142, 181, 194, 290, 291, 465, 538, 1046, 1047
BmrFI CCNGG 5 cut(s) 110, 167, 179, 541, 853
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 2 cut(s) 697, 709
BmuI ACTGGG 1 cut(s) 831
BpmI CTGGAG 3 cut(s) 22, 161, 780
BpuEI CTTGAG 2 cut(s) 731, 758
BpuMI CCSGG 3 cut(s) 110, 541, 853
BsaAI YACGTR 1 cut(s) 704
BsaHI GRCGYC 2 cut(s) 71, 87
BsaJI CCNNGG 5 cut(s) 109, 138, 228, 396, 435
BsaWI WCCGGW 3 cut(s) 10, 25, 150
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse118I RCCGGY 2 cut(s) 317, 1061
Bse1I ACTGG 2 cut(s) 763, 837
BseAI TCCGGA 1 cut(s) 150
BseBI CCWGG 2 cut(s) 167, 179
BseDI CCNNGG 5 cut(s) 109, 138, 228, 396, 435
BseGI GGATG 1 cut(s) 941
BseMII CTCAG 3 cut(s) 59, 68, 639
BseNI ACTGG 2 cut(s) 763, 837
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 2 cut(s) 294, 1050
BseXI GCAGC 1 cut(s) 527
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 368, 404
BshFI GGCC 9 cut(s) 195, 292, 373, 434, 455, 539, 990, 1039, 1048
BshNI GGYRCC 2 cut(s) 70, 245
BsiHKAI GWGCWC 2 cut(s) 38, 462
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 9 cut(s) 11, 26, 109, 151, 201, 318, 541, 852, 1062
BslFI GGGAC 1 cut(s) 808
BsmAI GTCTC 2 cut(s) 370, 621
BsmFI GGGAC 1 cut(s) 808
BsmI GAATGC 2 cut(s) 319, 804
BsnI GGCC 9 cut(s) 195, 292, 373, 434, 455, 539, 990, 1039, 1048
BsoBI CYCGRG 1 cut(s) 308
Bsp120I GGGCCC 2 cut(s) 290, 1046
Bsp1286I GDGCHC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 74, 321, 342, 345
BspANI GGCC 9 cut(s) 195, 292, 373, 434, 455, 539, 990, 1039, 1048
BspCNI CTCAG 3 cut(s) 58, 67, 640
BspEI TCCGGA 1 cut(s) 150
BspFNI CGCG 2 cut(s) 368, 404
BspMAI CTGCAG 2 cut(s) 333, 517
BspT107I GGYRCC 2 cut(s) 70, 245
BspTI CTTAAG 1 cut(s) 662
BsrFI RCCGGY 2 cut(s) 317, 1061
BsrI ACTGG 2 cut(s) 763, 837
BssAI RCCGGY 2 cut(s) 317, 1061
BssECI CCNNGG 5 cut(s) 109, 138, 228, 396, 435
BssMI GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
BssNI GRCGYC 2 cut(s) 71, 87
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 167, 179
Bst4CI ACNGT 3 cut(s) 125, 469, 888
BstACI GRCGYC 2 cut(s) 71, 87
BstAFI CTTAAG 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 5 cut(s) 319, 453, 678, 958, 1063
BstDEI CTNAG 6 cut(s) 45, 54, 426, 486, 648, 961
BstDSI CCRYGG 2 cut(s) 396, 435
BstF5I GGATG 1 cut(s) 941
BstFNI CGCG 2 cut(s) 368, 404
BstH2I RGCGCY 2 cut(s) 61, 74
BstHHI GCGC 3 cut(s) 60, 73, 368
BstKTI GATC 8 cut(s) 10, 31, 156, 172, 275, 475, 941, 982
BstMAI GTCTC 2 cut(s) 370, 621
BstMBI GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
BstMWI GCNNNNNNNGC 5 cut(s) 201, 431, 457, 673, 1045
BstNI CCWGG 2 cut(s) 167, 179
BstNSI RCATGY 2 cut(s) 883, 956
BstSCI CCNGG 5 cut(s) 108, 165, 177, 539, 851
BstSFI CTRYAG 2 cut(s) 329, 513
BstSLI GKGCMC 2 cut(s) 294, 1050
BstUI CGCG 2 cut(s) 368, 404
BstV1I GCAGC 1 cut(s) 527
BstX2I RGATCY 6 cut(s) 7, 28, 153, 169, 272, 979
BstYI RGATCY 6 cut(s) 7, 28, 153, 169, 272, 979
BsuRI GGCC 9 cut(s) 195, 292, 373, 434, 455, 539, 990, 1039, 1048
BtgI CCRYGG 2 cut(s) 396, 435
BtsCI GGATG 1 cut(s) 941
BtsIMutI CAGTG 1 cut(s) 722
Cac8I GCNNGC 5 cut(s) 319, 453, 678, 958, 1063
CfoI GCGC 3 cut(s) 60, 73, 368
Cfr10I RCCGGY 2 cut(s) 317, 1061
Cfr13I GGNCC 9 cut(s) 142, 181, 194, 290, 291, 465, 538, 1046, 1047
CseI GACGC 4 cut(s) 95, 393, 410, 583
Csp6I GTAC 1 cut(s) 544
CviAII CATG 6 cut(s) 67, 253, 259, 436, 880, 953
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 6 cut(s) 45, 54, 426, 486, 648, 961
DinI GGCGCC 1 cut(s) 72
DpnI GATC 8 cut(s) 9, 30, 155, 171, 274, 474, 940, 981
DpnII GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 453, 988
Eam1105I GACNNNNNGTC 1 cut(s) 196
Ecl136II GAGCTC 2 cut(s) 36, 460
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 142, 181, 465
Eco53kI GAGCTC 2 cut(s) 36, 460
Eco57I CTGAAG 2 cut(s) 746, 1062
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 2 cut(s) 36, 460
EcoO109I RGGNCCY 4 cut(s) 181, 291, 1046, 1047
EcoRII CCWGG 2 cut(s) 165, 177
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 6 cut(s) 70, 256, 262, 439, 883, 956
FaqI GGGAC 1 cut(s) 808
FatI CATG 6 cut(s) 66, 252, 258, 435, 879, 952
FauI CCCGC 1 cut(s) 338
Fnu4HI GCNGC 3 cut(s) 74, 343, 516
FokI GGATG 1 cut(s) 928
FriOI GRGCYC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
Fsp4HI GCNGC 3 cut(s) 74, 343, 516
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 3 cut(s) 59, 72, 367
GluI GCNGC 3 cut(s) 74, 343, 516
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 3 cut(s) 22, 161, 780
HaeII RGCGCY 2 cut(s) 61, 74
HaeIII GGCC 9 cut(s) 195, 292, 373, 434, 455, 539, 990, 1039, 1048
HapII CCGG 9 cut(s) 11, 26, 109, 151, 201, 318, 541, 852, 1062
HgaI GACGC 4 cut(s) 95, 393, 410, 583
HhaI GCGC 3 cut(s) 60, 73, 368
Hin1I GRCGYC 2 cut(s) 71, 87
Hin1II CATG 6 cut(s) 70, 256, 262, 439, 883, 956
Hin6I GCGC 3 cut(s) 58, 71, 366
HinP1I GCGC 3 cut(s) 58, 71, 366
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 4 cut(s) 50, 207, 782, 863
HpaII CCGG 9 cut(s) 11, 26, 109, 151, 201, 318, 541, 852, 1062
Hpy166II GTNNAC 2 cut(s) 16, 400
Hpy188III TCNNGA 6 cut(s) 47, 83, 151, 443, 463, 622
Hpy8I GTNNAC 2 cut(s) 16, 400
Hpy99I CGWCG 6 cut(s) 129, 164, 194, 287, 290, 473
HpyAV CCTTC 5 cut(s) 110, 424, 529, 838, 1037
HpyCH4III ACNGT 3 cut(s) 125, 469, 888
HpyCH4IV ACGT 1 cut(s) 703
HpyCH4V TGCA 7 cut(s) 4, 331, 515, 676, 722, 755, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 431, 457, 673, 1045
HpyF3I CTNAG 6 cut(s) 45, 54, 426, 486, 648, 961
HpySE526I ACGT 1 cut(s) 703
Hsp92I GRCGYC 2 cut(s) 71, 87
Hsp92II CATG 6 cut(s) 70, 256, 262, 439, 883, 956
HspAI GCGC 3 cut(s) 58, 71, 366
KasI GGCGCC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 150
KroI GCCGGC 2 cut(s) 317, 1061
KroNI GCCGGC 2 cut(s) 319, 1063
Kzo9I GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
LmnI GCTCC 7 cut(s) 41, 119, 180, 214, 230, 445, 922
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 2 cut(s) 697, 709
MaeI CTAG 1 cut(s) 1031
MaeII ACGT 1 cut(s) 703
MaeIII GTNAC 5 cut(s) 843, 855, 948, 969, 1070
MalI GATC 8 cut(s) 9, 30, 155, 171, 274, 474, 940, 981
MboI GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
MboII GAAGA 4 cut(s) 232, 245, 636, 739
MflI RGATCY 6 cut(s) 7, 28, 153, 169, 272, 979
MhlI GDGCHC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
MluCI AATT 3 cut(s) 698, 767, 896
MluI ACGCGT 1 cut(s) 402
Mly113I GGCGCC 1 cut(s) 71
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 315, 321
MroI TCCGGA 1 cut(s) 150
MroNI GCCGGC 2 cut(s) 317, 1061
MseI TTAA 3 cut(s) 663, 770, 1084
MslI CAYNNNNRTG 3 cut(s) 251, 257, 878
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 9 cut(s) 11, 26, 109, 151, 201, 318, 541, 852, 1062
MspR9I CCNGG 5 cut(s) 110, 167, 179, 541, 853
Mva1269I GAATGC 2 cut(s) 319, 804
MvaI CCWGG 2 cut(s) 167, 179
MvnI CGCG 2 cut(s) 368, 404
MwoI GCNNNNNNNGC 5 cut(s) 201, 431, 457, 673, 1045
NaeI GCCGGC 2 cut(s) 319, 1063
NarI GGCGCC 1 cut(s) 71
NciI CCSGG 3 cut(s) 110, 541, 853
NcoI CCATGG 1 cut(s) 435
NdeII GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
NgoMIV GCCGGC 2 cut(s) 317, 1061
NlaIII CATG 6 cut(s) 70, 256, 262, 439, 883, 956
NmeAIII GCCGAG 2 cut(s) 399, 481
NmuCI GTSAC 4 cut(s) 843, 855, 948, 969
NspI RCATGY 2 cut(s) 883, 956
PceI AGGCCT 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 2 cut(s) 319, 804
PdiI GCCGGC 2 cut(s) 319, 1063
PfeI GAWTC 3 cut(s) 207, 782, 863
PflFI GACNNNGTC 2 cut(s) 381, 853
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 3 cut(s) 75, 344, 517
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 704
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 2 cut(s) 38, 462
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 165, 177
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 165, 177
PspOMI GGGCCC 2 cut(s) 290, 1046
PspPI GGNCC 9 cut(s) 142, 181, 194, 290, 291, 465, 538, 1046, 1047
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 2 cut(s) 333, 517
PsuI RGATCY 6 cut(s) 7, 28, 153, 169, 272, 979
PsyI GACNNNGTC 2 cut(s) 381, 853
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 3 cut(s) 251, 257, 878
SacI GAGCTC 2 cut(s) 38, 462
SaqAI TTAA 3 cut(s) 663, 770, 1084
SatI GCNGC 3 cut(s) 74, 343, 516
Sau3AI GATC 8 cut(s) 7, 28, 153, 169, 272, 472, 938, 979
Sau96I GGNCC 9 cut(s) 142, 181, 194, 290, 291, 465, 538, 1046, 1047
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 5 cut(s) 110, 167, 179, 541, 853
SduI GDGCHC 7 cut(s) 38, 116, 133, 227, 294, 462, 1050
SfaNI GCATC 2 cut(s) 697, 709
SfcI CTRYAG 2 cut(s) 329, 513
SfiI GGCCNNNNNGGCC 1 cut(s) 1045
SfoI GGCGCC 1 cut(s) 72
SinI GGWCC 3 cut(s) 142, 181, 465
SmiMI CAYNNNNRTG 3 cut(s) 251, 257, 878
SmlI CTYRAG 3 cut(s) 662, 737, 746
SmoI CTYRAG 3 cut(s) 662, 737, 746
Sse9I AATT 3 cut(s) 698, 767, 896
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 74, 321, 342, 345
SspDI GGCGCC 1 cut(s) 70
SspMI CTAG 1 cut(s) 1031
SstI GAGCTC 2 cut(s) 38, 462
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 5 cut(s) 108, 165, 177, 539, 851
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 125, 469, 888
TaiI ACGT 1 cut(s) 706
TaqI TCGA 5 cut(s) 127, 189, 210, 282, 471
TaqII GACCGA 1 cut(s) 510
TasI AATT 3 cut(s) 698, 767, 896
TauI GCSGC 2 cut(s) 76, 345
TfiI GAWTC 3 cut(s) 207, 782, 863
Tru1I TTAA 3 cut(s) 663, 770, 1084
Tru9I TTAA 3 cut(s) 663, 770, 1084
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 4 cut(s) 843, 855, 948, 969
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 4 cut(s) 843, 855, 948, 969
TspDTI ATGAA 1 cut(s) 774
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 729
Tth111I GACNNNGTC 2 cut(s) 381, 853
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 3 cut(s) 142, 181, 465
XceI RCATGY 2 cut(s) 883, 956
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.