transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06850 AT1G06850 AT2G40620 |
| fragaria_vesca | FvH4_7g25870 |
| malus_domestica | MD01G1167000.v1.1 MD07G1233200.v1.1 |
| prunus_persica | Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1 |
| pyrus_communis | pycom01g18010 pycom07g21100 |
| rosa_chinensis | RchiOBHm_Chr1g0372151 |
| rosa_laevigata | RLG00000018975 RLG00000026918 |
| rosa_multiflora | Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00285180 |
| rosa_rugosa | Rorug01G0370000 |
| rosa_samantha | Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900 |
| rosa_wichuraiana | Rw1G033300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 70, 245 |
| AccII | CGCG | 2 cut(s) | 368, 404 |
| AccIII | TCCGGA | 1 cut(s) | 150 |
| AciI | CCGC | 4 cut(s) | 74, 321, 342, 345 |
| AcoI | YGGCCR | 2 cut(s) | 453, 988 |
| AcuI | CTGAAG | 2 cut(s) | 746, 1062 |
| AcyI | GRCGYC | 2 cut(s) | 71, 87 |
| AfaI | GTAC | 1 cut(s) | 545 |
| AflII | CTTAAG | 1 cut(s) | 662 |
| AflIII | ACRYGT | 1 cut(s) | 402 |
| AgsI | TTSAA | 1 cut(s) | 560 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 196 |
| AjnI | CCWGG | 2 cut(s) | 165, 177 |
| Alw21I | GWGCWC | 2 cut(s) | 38, 462 |
| Alw26I | GTCTC | 2 cut(s) | 370, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 308 |
| Aor13HI | TCCGGA | 1 cut(s) | 150 |
| AoxI | GGCC | 9 cut(s) | 193, 290, 371, 432, 453, 537, 988, 1037, 1046 |
| ApaI | GGGCCC | 2 cut(s) | 294, 1050 |
| ApeKI | GCWGC | 1 cut(s) | 515 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 494, 526 |
| AspLEI | GCGC | 3 cut(s) | 60, 73, 368 |
| AspS9I | GGNCC | 9 cut(s) | 142, 181, 194, 290, 291, 465, 538, 1046, 1047 |
| AsuC2I | CCSGG | 3 cut(s) | 110, 541, 853 |
| AvaI | CYCGRG | 1 cut(s) | 308 |
| AvaII | GGWCC | 3 cut(s) | 142, 181, 465 |
| BaeGI | GKGCMC | 2 cut(s) | 294, 1050 |
| BamHI | GGATCC | 4 cut(s) | 28, 153, 272, 979 |
| BanI | GGYRCC | 2 cut(s) | 70, 245 |
| BanII | GRGCYC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 527, 559 |
| Bbv12I | GWGCWC | 2 cut(s) | 38, 462 |
| BbvI | GCAGC | 1 cut(s) | 527 |
| BccI | CCATC | 2 cut(s) | 900, 930 |
| BceAI | ACGGC | 2 cut(s) | 61, 208 |
| BciT130I | CCWGG | 2 cut(s) | 167, 179 |
| BcnI | CCSGG | 3 cut(s) | 110, 541, 853 |
| BcoDI | GTCTC | 2 cut(s) | 370, 621 |
| BfaI | CTAG | 1 cut(s) | 1031 |
| BfmI | CTRYAG | 2 cut(s) | 329, 513 |
| BfoI | RGCGCY | 2 cut(s) | 61, 74 |
| BfrI | CTTAAG | 1 cut(s) | 662 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 201, 1045 |
| BisI | GCNGC | 3 cut(s) | 74, 343, 516 |
| BlsI | GCNGC | 3 cut(s) | 75, 344, 517 |
| Bme1390I | CCNGG | 5 cut(s) | 110, 167, 179, 541, 853 |
| Bme18I | GGWCC | 3 cut(s) | 142, 181, 465 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 9 cut(s) | 142, 181, 194, 290, 291, 465, 538, 1046, 1047 |
| BmrFI | CCNGG | 5 cut(s) | 110, 167, 179, 541, 853 |
| BmrI | ACTGGG | 1 cut(s) | 831 |
| BmsI | GCATC | 2 cut(s) | 697, 709 |
| BmuI | ACTGGG | 1 cut(s) | 831 |
| BpmI | CTGGAG | 3 cut(s) | 22, 161, 780 |
| BpuEI | CTTGAG | 2 cut(s) | 731, 758 |
| BpuMI | CCSGG | 3 cut(s) | 110, 541, 853 |
| BsaAI | YACGTR | 1 cut(s) | 704 |
| BsaHI | GRCGYC | 2 cut(s) | 71, 87 |
| BsaJI | CCNNGG | 5 cut(s) | 109, 138, 228, 396, 435 |
| BsaWI | WCCGGW | 3 cut(s) | 10, 25, 150 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bse118I | RCCGGY | 2 cut(s) | 317, 1061 |
| Bse1I | ACTGG | 2 cut(s) | 763, 837 |
| BseAI | TCCGGA | 1 cut(s) | 150 |
| BseBI | CCWGG | 2 cut(s) | 167, 179 |
| BseDI | CCNNGG | 5 cut(s) | 109, 138, 228, 396, 435 |
| BseGI | GGATG | 1 cut(s) | 941 |
| BseMII | CTCAG | 3 cut(s) | 59, 68, 639 |
| BseNI | ACTGG | 2 cut(s) | 763, 837 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseSI | GKGCMC | 2 cut(s) | 294, 1050 |
| BseXI | GCAGC | 1 cut(s) | 527 |
| BseYI | CCCAGC | 1 cut(s) | 217 |
| Bsh1236I | CGCG | 2 cut(s) | 368, 404 |
| BshFI | GGCC | 9 cut(s) | 195, 292, 373, 434, 455, 539, 990, 1039, 1048 |
| BshNI | GGYRCC | 2 cut(s) | 70, 245 |
| BsiHKAI | GWGCWC | 2 cut(s) | 38, 462 |
| BsiHKCI | CYCGRG | 1 cut(s) | 308 |
| BsiSI | CCGG | 9 cut(s) | 11, 26, 109, 151, 201, 318, 541, 852, 1062 |
| BslFI | GGGAC | 1 cut(s) | 808 |
| BsmAI | GTCTC | 2 cut(s) | 370, 621 |
| BsmFI | GGGAC | 1 cut(s) | 808 |
| BsmI | GAATGC | 2 cut(s) | 319, 804 |
| BsnI | GGCC | 9 cut(s) | 195, 292, 373, 434, 455, 539, 990, 1039, 1048 |
| BsoBI | CYCGRG | 1 cut(s) | 308 |
| Bsp120I | GGGCCC | 2 cut(s) | 290, 1046 |
| Bsp1286I | GDGCHC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| Bsp13I | TCCGGA | 1 cut(s) | 150 |
| Bsp143I | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| Bsp19I | CCATGG | 1 cut(s) | 435 |
| BspACI | CCGC | 4 cut(s) | 74, 321, 342, 345 |
| BspANI | GGCC | 9 cut(s) | 195, 292, 373, 434, 455, 539, 990, 1039, 1048 |
| BspCNI | CTCAG | 3 cut(s) | 58, 67, 640 |
| BspEI | TCCGGA | 1 cut(s) | 150 |
| BspFNI | CGCG | 2 cut(s) | 368, 404 |
| BspMAI | CTGCAG | 2 cut(s) | 333, 517 |
| BspT107I | GGYRCC | 2 cut(s) | 70, 245 |
| BspTI | CTTAAG | 1 cut(s) | 662 |
| BsrFI | RCCGGY | 2 cut(s) | 317, 1061 |
| BsrI | ACTGG | 2 cut(s) | 763, 837 |
| BssAI | RCCGGY | 2 cut(s) | 317, 1061 |
| BssECI | CCNNGG | 5 cut(s) | 109, 138, 228, 396, 435 |
| BssMI | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| BssNI | GRCGYC | 2 cut(s) | 71, 87 |
| BssT1I | CCWWGG | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 2 cut(s) | 167, 179 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 469, 888 |
| BstACI | GRCGYC | 2 cut(s) | 71, 87 |
| BstAFI | CTTAAG | 1 cut(s) | 662 |
| BstBAI | YACGTR | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 5 cut(s) | 319, 453, 678, 958, 1063 |
| BstDEI | CTNAG | 6 cut(s) | 45, 54, 426, 486, 648, 961 |
| BstDSI | CCRYGG | 2 cut(s) | 396, 435 |
| BstF5I | GGATG | 1 cut(s) | 941 |
| BstFNI | CGCG | 2 cut(s) | 368, 404 |
| BstH2I | RGCGCY | 2 cut(s) | 61, 74 |
| BstHHI | GCGC | 3 cut(s) | 60, 73, 368 |
| BstKTI | GATC | 8 cut(s) | 10, 31, 156, 172, 275, 475, 941, 982 |
| BstMAI | GTCTC | 2 cut(s) | 370, 621 |
| BstMBI | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 201, 431, 457, 673, 1045 |
| BstNI | CCWGG | 2 cut(s) | 167, 179 |
| BstNSI | RCATGY | 2 cut(s) | 883, 956 |
| BstSCI | CCNGG | 5 cut(s) | 108, 165, 177, 539, 851 |
| BstSFI | CTRYAG | 2 cut(s) | 329, 513 |
| BstSLI | GKGCMC | 2 cut(s) | 294, 1050 |
| BstUI | CGCG | 2 cut(s) | 368, 404 |
| BstV1I | GCAGC | 1 cut(s) | 527 |
| BstX2I | RGATCY | 6 cut(s) | 7, 28, 153, 169, 272, 979 |
| BstYI | RGATCY | 6 cut(s) | 7, 28, 153, 169, 272, 979 |
| BsuRI | GGCC | 9 cut(s) | 195, 292, 373, 434, 455, 539, 990, 1039, 1048 |
| BtgI | CCRYGG | 2 cut(s) | 396, 435 |
| BtsCI | GGATG | 1 cut(s) | 941 |
| BtsIMutI | CAGTG | 1 cut(s) | 722 |
| Cac8I | GCNNGC | 5 cut(s) | 319, 453, 678, 958, 1063 |
| CfoI | GCGC | 3 cut(s) | 60, 73, 368 |
| Cfr10I | RCCGGY | 2 cut(s) | 317, 1061 |
| Cfr13I | GGNCC | 9 cut(s) | 142, 181, 194, 290, 291, 465, 538, 1046, 1047 |
| CseI | GACGC | 4 cut(s) | 95, 393, 410, 583 |
| Csp6I | GTAC | 1 cut(s) | 544 |
| CviAII | CATG | 6 cut(s) | 67, 253, 259, 436, 880, 953 |
| CviQI | GTAC | 1 cut(s) | 544 |
| DdeI | CTNAG | 6 cut(s) | 45, 54, 426, 486, 648, 961 |
| DinI | GGCGCC | 1 cut(s) | 72 |
| DpnI | GATC | 8 cut(s) | 9, 30, 155, 171, 274, 474, 940, 981 |
| DpnII | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| DriI | GACNNNNNGTC | 1 cut(s) | 196 |
| EaeI | YGGCCR | 2 cut(s) | 453, 988 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 196 |
| Ecl136II | GAGCTC | 2 cut(s) | 36, 460 |
| Eco130I | CCWWGG | 1 cut(s) | 435 |
| Eco147I | AGGCCT | 1 cut(s) | 1039 |
| Eco24I | GRGCYC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| Eco32I | GATATC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 3 cut(s) | 142, 181, 465 |
| Eco53kI | GAGCTC | 2 cut(s) | 36, 460 |
| Eco57I | CTGAAG | 2 cut(s) | 746, 1062 |
| Eco88I | CYCGRG | 1 cut(s) | 308 |
| EcoICRI | GAGCTC | 2 cut(s) | 36, 460 |
| EcoO109I | RGGNCCY | 4 cut(s) | 181, 291, 1046, 1047 |
| EcoRII | CCWGG | 2 cut(s) | 165, 177 |
| EcoRV | GATATC | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 1 cut(s) | 435 |
| EcoT38I | GRGCYC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| EgeI | GGCGCC | 1 cut(s) | 72 |
| EheI | GGCGCC | 1 cut(s) | 72 |
| ErhI | CCWWGG | 1 cut(s) | 435 |
| FaeI | CATG | 6 cut(s) | 70, 256, 262, 439, 883, 956 |
| FaqI | GGGAC | 1 cut(s) | 808 |
| FatI | CATG | 6 cut(s) | 66, 252, 258, 435, 879, 952 |
| FauI | CCCGC | 1 cut(s) | 338 |
| Fnu4HI | GCNGC | 3 cut(s) | 74, 343, 516 |
| FokI | GGATG | 1 cut(s) | 928 |
| FriOI | GRGCYC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| Fsp4HI | GCNGC | 3 cut(s) | 74, 343, 516 |
| FspBI | CTAG | 1 cut(s) | 1031 |
| GlaI | GCGC | 3 cut(s) | 59, 72, 367 |
| GluI | GCNGC | 3 cut(s) | 74, 343, 516 |
| GsaI | CCCAGC | 1 cut(s) | 221 |
| GsuI | CTGGAG | 3 cut(s) | 22, 161, 780 |
| HaeII | RGCGCY | 2 cut(s) | 61, 74 |
| HaeIII | GGCC | 9 cut(s) | 195, 292, 373, 434, 455, 539, 990, 1039, 1048 |
| HapII | CCGG | 9 cut(s) | 11, 26, 109, 151, 201, 318, 541, 852, 1062 |
| HgaI | GACGC | 4 cut(s) | 95, 393, 410, 583 |
| HhaI | GCGC | 3 cut(s) | 60, 73, 368 |
| Hin1I | GRCGYC | 2 cut(s) | 71, 87 |
| Hin1II | CATG | 6 cut(s) | 70, 256, 262, 439, 883, 956 |
| Hin6I | GCGC | 3 cut(s) | 58, 71, 366 |
| HinP1I | GCGC | 3 cut(s) | 58, 71, 366 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 665 |
| HinfI | GANTC | 4 cut(s) | 50, 207, 782, 863 |
| HpaII | CCGG | 9 cut(s) | 11, 26, 109, 151, 201, 318, 541, 852, 1062 |
| Hpy166II | GTNNAC | 2 cut(s) | 16, 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 47, 83, 151, 443, 463, 622 |
| Hpy8I | GTNNAC | 2 cut(s) | 16, 400 |
| Hpy99I | CGWCG | 6 cut(s) | 129, 164, 194, 287, 290, 473 |
| HpyAV | CCTTC | 5 cut(s) | 110, 424, 529, 838, 1037 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 469, 888 |
| HpyCH4IV | ACGT | 1 cut(s) | 703 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 331, 515, 676, 722, 755, 802 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 201, 431, 457, 673, 1045 |
| HpyF3I | CTNAG | 6 cut(s) | 45, 54, 426, 486, 648, 961 |
| HpySE526I | ACGT | 1 cut(s) | 703 |
| Hsp92I | GRCGYC | 2 cut(s) | 71, 87 |
| Hsp92II | CATG | 6 cut(s) | 70, 256, 262, 439, 883, 956 |
| HspAI | GCGC | 3 cut(s) | 58, 71, 366 |
| KasI | GGCGCC | 1 cut(s) | 70 |
| Kpn2I | TCCGGA | 1 cut(s) | 150 |
| KroI | GCCGGC | 2 cut(s) | 317, 1061 |
| KroNI | GCCGGC | 2 cut(s) | 319, 1063 |
| Kzo9I | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| LmnI | GCTCC | 7 cut(s) | 41, 119, 180, 214, 230, 445, 922 |
| Lsp1109I | GCAGC | 1 cut(s) | 527 |
| LweI | GCATC | 2 cut(s) | 697, 709 |
| MaeI | CTAG | 1 cut(s) | 1031 |
| MaeII | ACGT | 1 cut(s) | 703 |
| MaeIII | GTNAC | 5 cut(s) | 843, 855, 948, 969, 1070 |
| MalI | GATC | 8 cut(s) | 9, 30, 155, 171, 274, 474, 940, 981 |
| MboI | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| MboII | GAAGA | 4 cut(s) | 232, 245, 636, 739 |
| MflI | RGATCY | 6 cut(s) | 7, 28, 153, 169, 272, 979 |
| MhlI | GDGCHC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| MluCI | AATT | 3 cut(s) | 698, 767, 896 |
| MluI | ACGCGT | 1 cut(s) | 402 |
| Mly113I | GGCGCC | 1 cut(s) | 71 |
| MlyI | GAGTC | 1 cut(s) | 44 |
| MmeI | TCCRAC | 2 cut(s) | 315, 321 |
| MroI | TCCGGA | 1 cut(s) | 150 |
| MroNI | GCCGGC | 2 cut(s) | 317, 1061 |
| MseI | TTAA | 3 cut(s) | 663, 770, 1084 |
| MslI | CAYNNNNRTG | 3 cut(s) | 251, 257, 878 |
| MspCI | CTTAAG | 1 cut(s) | 662 |
| MspI | CCGG | 9 cut(s) | 11, 26, 109, 151, 201, 318, 541, 852, 1062 |
| MspR9I | CCNGG | 5 cut(s) | 110, 167, 179, 541, 853 |
| Mva1269I | GAATGC | 2 cut(s) | 319, 804 |
| MvaI | CCWGG | 2 cut(s) | 167, 179 |
| MvnI | CGCG | 2 cut(s) | 368, 404 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 201, 431, 457, 673, 1045 |
| NaeI | GCCGGC | 2 cut(s) | 319, 1063 |
| NarI | GGCGCC | 1 cut(s) | 71 |
| NciI | CCSGG | 3 cut(s) | 110, 541, 853 |
| NcoI | CCATGG | 1 cut(s) | 435 |
| NdeII | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| NgoMIV | GCCGGC | 2 cut(s) | 317, 1061 |
| NlaIII | CATG | 6 cut(s) | 70, 256, 262, 439, 883, 956 |
| NmeAIII | GCCGAG | 2 cut(s) | 399, 481 |
| NmuCI | GTSAC | 4 cut(s) | 843, 855, 948, 969 |
| NspI | RCATGY | 2 cut(s) | 883, 956 |
| PceI | AGGCCT | 1 cut(s) | 1039 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 294 |
| PctI | GAATGC | 2 cut(s) | 319, 804 |
| PdiI | GCCGGC | 2 cut(s) | 319, 1063 |
| PfeI | GAWTC | 3 cut(s) | 207, 782, 863 |
| PflFI | GACNNNGTC | 2 cut(s) | 381, 853 |
| PfoI | TCCNGGA | 1 cut(s) | 177 |
| PkrI | GCNGC | 3 cut(s) | 75, 344, 517 |
| PleI | GAGTC | 1 cut(s) | 44 |
| PluTI | GGCGCC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 44 |
| Ppu21I | YACGTR | 1 cut(s) | 704 |
| PpuMI | RGGWCCY | 1 cut(s) | 181 |
| Psp124BI | GAGCTC | 2 cut(s) | 38, 462 |
| Psp5II | RGGWCCY | 1 cut(s) | 181 |
| Psp6I | CCWGG | 2 cut(s) | 165, 177 |
| PspFI | CCCAGC | 1 cut(s) | 217 |
| PspGI | CCWGG | 2 cut(s) | 165, 177 |
| PspOMI | GGGCCC | 2 cut(s) | 290, 1046 |
| PspPI | GGNCC | 9 cut(s) | 142, 181, 194, 290, 291, 465, 538, 1046, 1047 |
| PspPPI | RGGWCCY | 1 cut(s) | 181 |
| PstI | CTGCAG | 2 cut(s) | 333, 517 |
| PsuI | RGATCY | 6 cut(s) | 7, 28, 153, 169, 272, 979 |
| PsyI | GACNNNGTC | 2 cut(s) | 381, 853 |
| RsaI | GTAC | 1 cut(s) | 545 |
| RsaNI | GTAC | 1 cut(s) | 544 |
| RseI | CAYNNNNRTG | 3 cut(s) | 251, 257, 878 |
| SacI | GAGCTC | 2 cut(s) | 38, 462 |
| SaqAI | TTAA | 3 cut(s) | 663, 770, 1084 |
| SatI | GCNGC | 3 cut(s) | 74, 343, 516 |
| Sau3AI | GATC | 8 cut(s) | 7, 28, 153, 169, 272, 472, 938, 979 |
| Sau96I | GGNCC | 9 cut(s) | 142, 181, 194, 290, 291, 465, 538, 1046, 1047 |
| SchI | GAGTC | 1 cut(s) | 44 |
| ScrFI | CCNGG | 5 cut(s) | 110, 167, 179, 541, 853 |
| SduI | GDGCHC | 7 cut(s) | 38, 116, 133, 227, 294, 462, 1050 |
| SfaNI | GCATC | 2 cut(s) | 697, 709 |
| SfcI | CTRYAG | 2 cut(s) | 329, 513 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1045 |
| SfoI | GGCGCC | 1 cut(s) | 72 |
| SinI | GGWCC | 3 cut(s) | 142, 181, 465 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 251, 257, 878 |
| SmlI | CTYRAG | 3 cut(s) | 662, 737, 746 |
| SmoI | CTYRAG | 3 cut(s) | 662, 737, 746 |
| Sse9I | AATT | 3 cut(s) | 698, 767, 896 |
| SseBI | AGGCCT | 1 cut(s) | 1039 |
| SsiI | CCGC | 4 cut(s) | 74, 321, 342, 345 |
| SspDI | GGCGCC | 1 cut(s) | 70 |
| SspMI | CTAG | 1 cut(s) | 1031 |
| SstI | GAGCTC | 2 cut(s) | 38, 462 |
| StuI | AGGCCT | 1 cut(s) | 1039 |
| StyD4I | CCNGG | 5 cut(s) | 108, 165, 177, 539, 851 |
| StyI | CCWWGG | 1 cut(s) | 435 |
| TaaI | ACNGT | 3 cut(s) | 125, 469, 888 |
| TaiI | ACGT | 1 cut(s) | 706 |
| TaqI | TCGA | 5 cut(s) | 127, 189, 210, 282, 471 |
| TaqII | GACCGA | 1 cut(s) | 510 |
| TasI | AATT | 3 cut(s) | 698, 767, 896 |
| TauI | GCSGC | 2 cut(s) | 76, 345 |
| TfiI | GAWTC | 3 cut(s) | 207, 782, 863 |
| Tru1I | TTAA | 3 cut(s) | 663, 770, 1084 |
| Tru9I | TTAA | 3 cut(s) | 663, 770, 1084 |
| TscAI | CASTG | 1 cut(s) | 729 |
| TseFI | GTSAC | 4 cut(s) | 843, 855, 948, 969 |
| TseI | GCWGC | 1 cut(s) | 515 |
| Tsp45I | GTSAC | 4 cut(s) | 843, 855, 948, 969 |
| TspDTI | ATGAA | 1 cut(s) | 774 |
| TspGWI | ACGGA | 1 cut(s) | 385 |
| TspRI | CASTG | 1 cut(s) | 729 |
| Tth111I | GACNNNGTC | 2 cut(s) | 381, 853 |
| Vha464I | CTTAAG | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 3 cut(s) | 142, 181, 465 |
| XceI | RCATGY | 2 cut(s) | 883, 956 |
| XspI | CTAG | 1 cut(s) | 1031 |