Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009591

Physical Location & Seq

Genomic Coordinates Reverse (-)

47548445 .. 47550836

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG341800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGACATTGAGAAGCTCGGATCCAAGCTCGAGGATGGATCCTCCGGCCCCAAACCCGAGAATGCCGCCGGGTCAACGTCGCAGGCGGAGGCCGGCTCCGGCGAGGGGAGCAGCGCCAGGCCGAGGCACAGGCATAGCAGCTCCATGGACGGGTCCTCGGAATCGATAGAGGCTAAGAAGGCCATGGCTCCTGAGAAGCTCGCTGAGCTTTGGGCCGTCGATCCCAAGCGAGCCAAGAGGATTTTGGCAAATCGGCAGTCTGCTGCTAGGTCAAAAGAGAGGAAGGCCCGGTACATATCAGAACTTGAAAGGAAAGTTCAGACCCTTCAAACAGAAGCGACTACTCTATCTGCTCAACTCACTCTATTCCAGAGAGATACAACGGGATTGTCGTCTGAGAACACAGAGCTTAAGATTCGGTTGCAAGCTATGGAACAACAAGCTCAGTTACGCGATGCTCTGAATGATGCACTGAAGAAAGAACTTGAGAGGCTCAAGATTGCAACTGGAGAAGCACTAACACACACTGATTCTTACAACCTGGGAATGCACCATTTTCCATATTCGCAATCCTCCTACTTTCCCGGTCAGCCACAGTCTGGGTCACGTGATTCTCAGAACATTCAGCTGCCACAGTTTCATCAGTTCCAGTCTAATATGCAAGCTCCGCATCAGCCTATGCTTGGTGCAGCAGCCCAATCACATGCTTGCTCAGAGATGATGCAGCAGGATTCAATTGGCCGATTCCAGGGGCTCGATATCAATAACAGAGGAGGTTCTCATCTAGTGAAGCCCGAAGGCTCCTCTATATCTGCTGGAGAAACCAATAGAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

279

Amino Acids

30.62

Weight (kDa)

8.6

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	74 - 123	3.4e-06	Basic region leucine zipper
bZIP_1	PF00170	76 - 133	8.1e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06850 AT1G06850 AT2G40620
fragaria_vesca	FvH4_7g25870
malus_domestica	MD01G1167000.v1.1 MD07G1233200.v1.1
prunus_persica	Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1
pyrus_communis	pycom01g18010 pycom07g21100
rosa_chinensis	RchiOBHm_Chr1g0372151
rosa_laevigata	RLG00000018975 RLG00000026918
rosa_multiflora	Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285180
rosa_rugosa	Rorug01G0370000
rosa_samantha	Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900
rosa_wichuraiana	Rw1G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccII	CGCG	1 cut(s)	453
AciI	CCGC	3 cut(s)	66, 86, 668
AclWI	GGATC	5 cut(s)	15, 28, 33, 46, 215
AcoI	YGGCCR	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	494
AcvI	CACGTG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	6 cut(s)	105, 123, 150, 599, 683, 748
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	308, 329, 735
AjnI	CCWGG	3 cut(s)	116, 540, 747
AlwI	GGATC	5 cut(s)	15, 28, 33, 46, 215
Ama87I	CYCGRG	2 cut(s)	29, 56
AoxI	GGCC	7 cut(s)	46, 90, 119, 180, 213, 285, 739
ApeKI	GCWGC	7 cut(s)	111, 138, 263, 628, 689, 692, 724
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	4 cut(s)	47, 153, 213, 286
AsuC2I	CCSGG	3 cut(s)	70, 289, 585
AvaI	CYCGRG	2 cut(s)	29, 56
AvaII	GGWCC	1 cut(s)	153
BamHI	GGATCC	2 cut(s)	20, 38
BanII	GRGCYC	1 cut(s)	756
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbrPI	CACGTG	1 cut(s)	608
BbvI	GCAGC	7 cut(s)	123, 150, 250, 615, 701, 704, 736
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	3 cut(s)	118, 542, 749
BcnI	CCSGG	3 cut(s)	70, 289, 585
BfaI	CTAG	2 cut(s)	267, 785
BfoI	RGCGCY	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	8 cut(s)	66, 112, 139, 264, 629, 690, 693, 725
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	8 cut(s)	67, 113, 140, 265, 630, 691, 694, 726
Bme1390I	CCNGG	6 cut(s)	70, 118, 289, 542, 585, 749
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	2 cut(s)	29, 56
BmgT120I	GGNCC	4 cut(s)	47, 153, 213, 286
BmiI	GGNNCC	7 cut(s)	22, 40, 49, 97, 154, 189, 802
BmrFI	CCNGG	6 cut(s)	70, 118, 289, 542, 585, 749
BmsI	GCATC	4 cut(s)	445, 457, 679, 711
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	528, 837
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	479, 506
BpuMI	CCSGG	3 cut(s)	70, 289, 585
Bsa29I	ATCGAT	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	6 cut(s)	122, 144, 156, 183, 541, 748
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 123, 150, 599, 683, 748
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	511, 649
BseBI	CCWGG	3 cut(s)	118, 542, 749
BseCI	ATCGAT	1 cut(s)	164
BseDI	CCNNGG	6 cut(s)	122, 144, 156, 183, 541, 748
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	6 cut(s)	105, 123, 150, 599, 683, 748
BseMII	CTCAG	6 cut(s)	183, 195, 387, 458, 629, 726
BseNI	ACTGG	2 cut(s)	511, 649
BseRI	GAGGAG	2 cut(s)	786, 793
BseXI	GCAGC	7 cut(s)	123, 150, 250, 615, 701, 704, 736
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	7 cut(s)	48, 92, 121, 182, 215, 287, 741
BshVI	ATCGAT	1 cut(s)	164
BsiHKCI	CYCGRG	2 cut(s)	29, 56
BsiSI	CCGG	6 cut(s)	45, 69, 93, 99, 289, 585
BslI	CCNNNNNNNGG	6 cut(s)	105, 123, 150, 599, 683, 748
BsmI	GAATGC	2 cut(s)	67, 552
BsnI	GGCC	7 cut(s)	48, 92, 121, 182, 215, 287, 741
BsoBI	CYCGRG	2 cut(s)	29, 56
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	20, 38, 220
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	2 cut(s)	144, 183
BspACI	CCGC	3 cut(s)	66, 86, 668
BspANI	GGCC	7 cut(s)	48, 92, 121, 182, 215, 287, 741
BspCNI	CTCAG	6 cut(s)	184, 196, 388, 457, 628, 725
BspDI	ATCGAT	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	7 cut(s)	22, 40, 49, 97, 154, 189, 802
BspPI	GGATC	5 cut(s)	15, 28, 33, 46, 215
BspTI	CTTAAG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	511, 649
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	6 cut(s)	122, 144, 156, 183, 541, 748
BssMI	GATC	3 cut(s)	20, 38, 220
BssT1I	CCWWGG	2 cut(s)	144, 183
Bst2UI	CCWGG	3 cut(s)	118, 542, 749
Bst4CI	ACNGT	2 cut(s)	597, 636
BstAFI	CTTAAG	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	7 cut(s)	84, 94, 201, 231, 426, 663, 709
BstDEI	CTNAG	7 cut(s)	174, 192, 204, 396, 444, 615, 712
BstDSI	CCRYGG	2 cut(s)	144, 183
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	23, 41, 223
BstMBI	GATC	3 cut(s)	20, 38, 220
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 179, 205, 667
BstNI	CCWGG	3 cut(s)	118, 542, 749
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	6 cut(s)	68, 116, 287, 540, 583, 747
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	7 cut(s)	123, 150, 250, 615, 701, 704, 736
BstX2I	RGATCY	2 cut(s)	20, 38
BstYI	RGATCY	2 cut(s)	20, 38
Bsu15I	ATCGAT	1 cut(s)	164
BsuRI	GGCC	7 cut(s)	48, 92, 121, 182, 215, 287, 741
BsuTUI	ATCGAT	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	144, 183
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	470, 525
Cac8I	GCNNGC	7 cut(s)	84, 94, 201, 231, 426, 663, 709
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	47, 153, 213, 286
ClaI	ATCGAT	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	145, 184, 704
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	7 cut(s)	174, 192, 204, 396, 444, 615, 712
DpnI	GATC	3 cut(s)	22, 40, 222
DpnII	GATC	3 cut(s)	20, 38, 220
EaeI	YGGCCR	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	144, 183
Eco24I	GRGCYC	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	608
Eco88I	CYCGRG	2 cut(s)	29, 56
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	3 cut(s)	116, 540, 747
EcoRV	GATATC	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	144, 183
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	2 cut(s)	144, 183
FaeI	CATG	3 cut(s)	148, 187, 707
FatI	CATG	3 cut(s)	144, 183, 703
Fnu4HI	GCNGC	8 cut(s)	66, 112, 139, 264, 629, 690, 693, 725
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	8 cut(s)	66, 112, 139, 264, 629, 690, 693, 725
FspBI	CTAG	2 cut(s)	267, 785
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	8 cut(s)	66, 112, 139, 264, 629, 690, 693, 725
GsuI	CTGGAG	2 cut(s)	528, 837
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	7 cut(s)	48, 92, 121, 182, 215, 287, 741
HapII	CCGG	6 cut(s)	45, 69, 93, 99, 289, 585
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	148, 187, 707
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	6 cut(s)	161, 415, 530, 611, 731, 744
HpaII	CCGG	6 cut(s)	45, 69, 93, 99, 289, 585
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	8 cut(s)	20, 160, 301, 321, 397, 462, 618, 715
Hpy188III	TCNNGA	3 cut(s)	191, 370, 496
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	2 cut(s)	82, 221
HpyAV	CCTTC	4 cut(s)	172, 277, 335, 791
HpyCH4III	ACNGT	2 cut(s)	597, 636
HpyCH4IV	ACGT	2 cut(s)	77, 607
HpyCH4V	TGCA	7 cut(s)	424, 470, 503, 550, 661, 689, 724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 179, 205, 667
HpyF3I	CTNAG	7 cut(s)	174, 192, 204, 396, 444, 615, 712
HpySE526I	ACGT	2 cut(s)	77, 607
Hsp92II	CATG	3 cut(s)	148, 187, 707
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	20, 38, 220
LmnI	GCTCC	6 cut(s)	101, 108, 146, 193, 670, 806
Lsp1109I	GCAGC	7 cut(s)	123, 150, 250, 615, 701, 704, 736
LweI	GCATC	4 cut(s)	445, 457, 679, 711
MaeI	CTAG	2 cut(s)	267, 785
MaeII	ACGT	2 cut(s)	77, 607
MaeIII	GTNAC	2 cut(s)	447, 603
MalI	GATC	3 cut(s)	22, 40, 222
MboI	GATC	3 cut(s)	20, 38, 220
MboII	GAAGA	1 cut(s)	487
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	2 cut(s)	20, 38
MhlI	GDGCHC	1 cut(s)	756
MluCI	AATT	1 cut(s)	735
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	628
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	6 cut(s)	45, 69, 93, 99, 289, 585
MspR9I	CCNGG	6 cut(s)	70, 118, 289, 542, 585, 749
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	67, 552
MvaI	CCWGG	3 cut(s)	118, 542, 749
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	108, 179, 205, 667
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	3 cut(s)	70, 289, 585
NcoI	CCATGG	2 cut(s)	144, 183
NdeII	GATC	3 cut(s)	20, 38, 220
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	148, 187, 707
NlaIV	GGNNCC	7 cut(s)	22, 40, 49, 97, 154, 189, 802
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	603
NspI	RCATGY	1 cut(s)	707
PaeR7I	CTCGAG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PctI	GAATGC	2 cut(s)	67, 552
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	6 cut(s)	161, 415, 530, 611, 731, 744
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	8 cut(s)	67, 113, 140, 265, 630, 691, 694, 726
PmaCI	CACGTG	1 cut(s)	608
PmlI	CACGTG	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	116, 540, 747
PspCI	CACGTG	1 cut(s)	608
PspGI	CCWGG	3 cut(s)	116, 540, 747
PspN4I	GGNNCC	7 cut(s)	22, 40, 49, 97, 154, 189, 802
PspPI	GGNCC	4 cut(s)	47, 153, 213, 286
PspPPI	RGGWCCY	1 cut(s)	153
PspXI	VCTCGAGB	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	20, 38
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	8 cut(s)	66, 112, 139, 264, 629, 690, 693, 725
Sau3AI	GATC	3 cut(s)	20, 38, 220
Sau96I	GGNCC	4 cut(s)	47, 153, 213, 286
ScrFI	CCNGG	6 cut(s)	70, 118, 289, 542, 585, 749
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	4 cut(s)	445, 457, 679, 711
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	4 cut(s)	29, 410, 485, 494
SmoI	CTYRAG	4 cut(s)	29, 410, 485, 494
Sse9I	AATT	1 cut(s)	735
SsiI	CCGC	3 cut(s)	66, 86, 668
SspMI	CTAG	2 cut(s)	267, 785
StyD4I	CCNGG	6 cut(s)	68, 116, 287, 540, 583, 747
StyI	CCWWGG	2 cut(s)	144, 183
TaaI	ACNGT	2 cut(s)	597, 636
TaiI	ACGT	2 cut(s)	80, 610
TaqI	TCGA	4 cut(s)	30, 164, 219, 756
TasI	AATT	1 cut(s)	735
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	6 cut(s)	161, 415, 530, 611, 731, 744
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	477, 532
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	7 cut(s)	111, 138, 263, 628, 689, 692, 724
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	477, 532
Van91I	CCANNNNNTGG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	29
XspI	CTAG	2 cut(s)	267, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.