Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8109412.1

Orthogroup ID

OG0009591

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 570

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8109412.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcaagatccggcgaacccgaaaccggatccgaacccggccgtctcccaggactcttcccgcctccctatgacgacgtcgtttccggaccccaccccaagcctcaccctccgcggctcctaccaccggcgcgcccaatcggaggtccatttccggatccccgacgacctggatctgctgcaggaccccttcgacggcccatccgccagcttcgaggagctcggctccgaagacgacctcttctgcacctacatggacattgagaagctcggatccaagctcgaggatggatcctccggccccaaacccgagaatgccgccgggtcaacgtcgcaggcggaggccggctccggcgaggggagcagcgccaggccgaggcacaggcatagcagctccatggacgggtccttggaatcgatagaggctaagaaggccatggctcctgagaagctcgctgagctttgggccgtcgatcccaagcgagccaagaggtatattgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

167

Amino Acids

18.11

Weight (kDa)

4.9

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06850 AT1G06850 AT2G40620
fragaria_vesca	FvH4_7g25870
malus_domestica	MD01G1167000.v1.1 MD07G1233200.v1.1
prunus_persica	Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1
pyrus_communis	pycom01g18010 pycom07g21100
rosa_chinensis	RchiOBHm_Chr1g0372151
rosa_laevigata	RLG00000018975 RLG00000026918
rosa_multiflora	Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285180
rosa_rugosa	Rorug01G0370000
rosa_samantha	Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900
rosa_wichuraiana	Rw1G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccII	CGCG	2 cut(s)	114, 132
AccIII	TCCGGA	2 cut(s)	85, 153
AciI	CCGC	6 cut(s)	61, 112, 114, 204, 318, 338
AcoI	YGGCCR	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	77
AfiI	CCNNNNNNNGG	7 cut(s)	25, 126, 142, 194, 357, 375, 402
AjnI	CCWGG	3 cut(s)	48, 168, 368
AluBI	AGCT	7 cut(s)	210, 220, 268, 280, 393, 451, 460
AluI	AGCT	7 cut(s)	210, 220, 268, 280, 393, 451, 460
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	281, 308
Aor13HI	TCCGGA	2 cut(s)	85, 153
AoxI	GGCC	7 cut(s)	39, 196, 298, 342, 371, 432, 465
ApeKI	GCWGC	3 cut(s)	178, 363, 390
AscI	GGCGCGCC	1 cut(s)	130
AspLEI	GCGC	3 cut(s)	132, 134, 368
AspS9I	GGNCC	7 cut(s)	88, 145, 184, 197, 299, 405, 465
AsuC2I	CCSGG	2 cut(s)	38, 322
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	2 cut(s)	281, 308
AvaII	GGWCC	4 cut(s)	88, 145, 184, 405
BamHI	GGATCC	4 cut(s)	28, 156, 272, 290
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	165, 375, 402
BccI	CCATC	2 cut(s)	208, 281
BceAI	ACGGC	3 cut(s)	26, 211, 452
BciT130I	CCWGG	3 cut(s)	50, 170, 370
BcnI	CCSGG	2 cut(s)	38, 322
BcoDI	GTCTC	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	369
BisI	GCNGC	5 cut(s)	115, 179, 318, 364, 391
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	5 cut(s)	116, 180, 319, 365, 392
Bme1390I	CCNGG	5 cut(s)	38, 50, 170, 322, 370
Bme18I	GGWCC	4 cut(s)	88, 145, 184, 405
BmeT110I	CYCGRG	2 cut(s)	281, 308
BmgT120I	GGNCC	7 cut(s)	88, 145, 184, 197, 299, 405, 465
BmrFI	CCNGG	5 cut(s)	38, 50, 170, 322, 370
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 332, 364
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuMI	CCSGG	2 cut(s)	38, 322
Bsa29I	ATCGAT	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	6 cut(s)	48, 112, 374, 396, 408, 435
BsaWI	WCCGGW	3 cut(s)	25, 85, 153
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 126, 142, 194, 357, 375, 402
Bse118I	RCCGGY	2 cut(s)	126, 344
BseAI	TCCGGA	2 cut(s)	85, 153
BseBI	CCWGG	3 cut(s)	50, 170, 370
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	6 cut(s)	48, 112, 374, 396, 408, 435
BseGI	GGATG	2 cut(s)	200, 292
BseLI	CCNNNNNNNGG	7 cut(s)	25, 126, 142, 194, 357, 375, 402
BseMII	CTCAG	2 cut(s)	435, 447
BsePI	GCGCGC	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	165, 375, 402
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	2 cut(s)	114, 132
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	7 cut(s)	41, 198, 300, 344, 373, 434, 467
BshVI	ATCGAT	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	2 cut(s)	281, 308
BslI	CCNNNNNNNGG	7 cut(s)	25, 126, 142, 194, 357, 375, 402
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	7 cut(s)	41, 198, 300, 344, 373, 434, 467
BsoBI	CYCGRG	2 cut(s)	281, 308
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	2 cut(s)	85, 153
Bsp143I	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	2 cut(s)	396, 435
BspACI	CCGC	6 cut(s)	61, 112, 114, 204, 318, 338
BspANI	GGCC	7 cut(s)	41, 198, 300, 344, 373, 434, 467
BspCNI	CTCAG	2 cut(s)	436, 448
BspDI	ATCGAT	1 cut(s)	416
BspEI	TCCGGA	2 cut(s)	85, 153
BspFNI	CGCG	2 cut(s)	114, 132
BspMAI	CTGCAG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	126, 344
BssAI	RCCGGY	2 cut(s)	126, 344
BssECI	CCNNGG	6 cut(s)	48, 112, 374, 396, 408, 435
BssHII	GCGCGC	1 cut(s)	130
BssMI	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	3 cut(s)	396, 408, 435
Bst2UI	CCWGG	3 cut(s)	50, 170, 370
Bst6I	CTCTTC	2 cut(s)	61, 245
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	6 cut(s)	132, 208, 336, 346, 453, 483
BstDEI	CTNAG	3 cut(s)	426, 444, 456
BstDSI	CCRYGG	3 cut(s)	112, 396, 435
BstF5I	GGATG	2 cut(s)	200, 292
BstFNI	CGCG	2 cut(s)	114, 132
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	3 cut(s)	132, 134, 368
BstKTI	GATC	7 cut(s)	10, 31, 159, 175, 275, 293, 475
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 431, 457
BstNI	CCWGG	3 cut(s)	50, 170, 370
BstSCI	CCNGG	5 cut(s)	36, 48, 168, 320, 368
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	2 cut(s)	114, 132
BstV1I	GCAGC	3 cut(s)	165, 375, 402
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	6 cut(s)	7, 28, 156, 172, 272, 290
BstYI	RGATCY	6 cut(s)	7, 28, 156, 172, 272, 290
BstZI	CGGCCG	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	7 cut(s)	41, 198, 300, 344, 373, 434, 467
BsuTUI	ATCGAT	1 cut(s)	416
BtgI	CCRYGG	3 cut(s)	112, 396, 435
BtsCI	GGATG	2 cut(s)	200, 292
Cac8I	GCNNGC	6 cut(s)	132, 208, 336, 346, 453, 483
CfoI	GCGC	3 cut(s)	132, 134, 368
Cfr10I	RCCGGY	2 cut(s)	126, 344
Cfr13I	GGNCC	7 cut(s)	88, 145, 184, 197, 299, 405, 465
Cfr42I	CCGCGG	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	416
CviAII	CATG	3 cut(s)	253, 397, 436
DdeI	CTNAG	3 cut(s)	426, 444, 456
DpnI	GATC	7 cut(s)	9, 30, 158, 174, 274, 292, 474
DpnII	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	61, 245
EarI	CTCTTC	2 cut(s)	61, 245
EciI	GGCGGA	2 cut(s)	193, 353
Ecl136II	GAGCTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	396, 408, 435
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	4 cut(s)	88, 145, 184, 405
Eco52I	CGGCCG	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	281, 308
EcoICRI	GAGCTC	1 cut(s)	220
EcoO109I	RGGNCCY	2 cut(s)	184, 405
EcoRII	CCWGG	3 cut(s)	48, 168, 368
EcoT14I	CCWWGG	3 cut(s)	396, 408, 435
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	396, 408, 435
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	3 cut(s)	256, 400, 439
FaiI	YATR	6 cut(s)	71, 254, 387, 398, 437, 495
FatI	CATG	3 cut(s)	252, 396, 435
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	5 cut(s)	115, 179, 318, 364, 391
FokI	GGATG	2 cut(s)	187, 299
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	115, 179, 318, 364, 391
GlaI	GCGC	3 cut(s)	131, 133, 367
GluI	GCNGC	5 cut(s)	115, 179, 318, 364, 391
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	7 cut(s)	41, 198, 300, 344, 373, 434, 467
HhaI	GCGC	3 cut(s)	132, 134, 368
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	256, 400, 439
Hin6I	GCGC	3 cut(s)	130, 132, 366
HinP1I	GCGC	3 cut(s)	130, 132, 366
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	53, 413
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	4 cut(s)	33, 142, 229, 272
Hpy188III	TCNNGA	3 cut(s)	86, 154, 443
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	6 cut(s)	79, 82, 167, 197, 334, 473
HpyAV	CCTTC	2 cut(s)	199, 424
HpyCH4IV	ACGT	2 cut(s)	77, 329
HpyCH4V	TGCA	3 cut(s)	4, 181, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 431, 457
HpyF3I	CTNAG	3 cut(s)	426, 444, 456
HpySE526I	ACGT	2 cut(s)	77, 329
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	256, 400, 439
HspAI	GCGC	3 cut(s)	130, 132, 366
Kpn2I	TCCGGA	2 cut(s)	85, 153
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	115
Kzo9I	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
LmnI	GCTCC	7 cut(s)	122, 217, 230, 353, 360, 398, 445
Lsp1109I	GCAGC	3 cut(s)	165, 375, 402
MaeII	ACGT	2 cut(s)	77, 329
MalI	GATC	7 cut(s)	9, 30, 158, 174, 274, 292, 474
MboI	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
MboII	GAAGA	3 cut(s)	48, 232, 242
MflI	RGATCY	6 cut(s)	7, 28, 156, 172, 272, 290
MhlI	GDGCHC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	47
MroI	TCCGGA	2 cut(s)	85, 153
MroNI	GCCGGC	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	114
MspR9I	CCNGG	5 cut(s)	38, 50, 170, 322, 370
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	3 cut(s)	50, 170, 370
MvnI	CGCG	2 cut(s)	114, 132
MwoI	GCNNNNNNNGC	3 cut(s)	360, 431, 457
NaeI	GCCGGC	1 cut(s)	346
NciI	CCSGG	2 cut(s)	38, 322
NcoI	CCATGG	2 cut(s)	396, 435
NdeII	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	256, 400, 439
NmeAIII	GCCGAG	2 cut(s)	201, 399
PaeR7I	CTCGAG	1 cut(s)	281
PalAI	GGCGCGCC	1 cut(s)	130
PauI	GCGCGC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	116, 180, 319, 365, 392
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PpuMI	RGGWCCY	2 cut(s)	184, 405
Psp124BI	GAGCTC	1 cut(s)	222
Psp5II	RGGWCCY	2 cut(s)	184, 405
Psp6I	CCWGG	3 cut(s)	48, 168, 368
PspGI	CCWGG	3 cut(s)	48, 168, 368
PspPI	GGNCC	7 cut(s)	88, 145, 184, 197, 299, 405, 465
PspPPI	RGGWCCY	2 cut(s)	184, 405
PspXI	VCTCGAGB	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	6 cut(s)	7, 28, 156, 172, 272, 290
PsyI	GACNNNGTC	1 cut(s)	76
PteI	GCGCGC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	115
SatI	GCNGC	5 cut(s)	115, 179, 318, 364, 391
Sau3AI	GATC	7 cut(s)	7, 28, 156, 172, 272, 290, 472
Sau96I	GGNCC	7 cut(s)	88, 145, 184, 197, 299, 405, 465
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	5 cut(s)	38, 50, 170, 322, 370
SduI	GDGCHC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	179
Sfr274I	CTCGAG	1 cut(s)	281
Sfr303I	CCGCGG	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	115
SgsI	GGCGCGCC	1 cut(s)	130
SinI	GGWCC	4 cut(s)	88, 145, 184, 405
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SsiI	CCGC	6 cut(s)	61, 112, 114, 204, 318, 338
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	5 cut(s)	36, 48, 168, 320, 368
StyI	CCWWGG	3 cut(s)	396, 408, 435
TaiI	ACGT	2 cut(s)	80, 332
TaqI	TCGA	5 cut(s)	192, 213, 282, 416, 471
TauI	GCSGC	2 cut(s)	117, 320
TfiI	GAWTC	1 cut(s)	413
TseI	GCWGC	3 cut(s)	178, 363, 390
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	4 cut(s)	88, 145, 184, 405
XhoI	CTCGAG	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.