Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

48425591 .. 48427143

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTCACCAAACTCATCATCTCACTTCTCCTCCTCCAACTCTCCACCACCGCTTTTTGCGATGCCGGCAGCCAAAATGCCGGCCCCATATTATTTTGTGTTGCGAGAGGAGGAACTAGCGAACAAAGTTTGTCAGCAAACATAGACTACGCTTGTAACCAGGCCAGCGTAAATTGTCAGCCTATACAACCAGGTGGTGCTTGTTTTACCAACGATCTCAAAACCCGGGCATCCTTCGCAATGAATGCGTACTACAACCTTTACAGCTCACTAGGTGGCACCTGCGATTTCTCTGGTTCCGGACAAGTCATAAACTTTGACCCAAGCAACGGCTCGTGCCAGTTTAGTAGTGGAAGTAAAGCTGCACCAATTAATACGCCGGGTAGTTCTGCCACACCTACACCTATACCCAAAACACCAAAACCTTCACCAGGAGGAGACAATGGTCCAGGCTTCAAGTGGTGCATAGCAAAACCCCATGCTGATATTCAAGGTTTGCAGAAAAGCTTAGACTGGTTGTGCGGCATGATAGAATGCCAAGCCATACAACCAGGTGGTGCTTGCTATGACGAATCTGTCAGGTCCCGAGCATCCTTTGCTATGAATTCTTACTATCAGACAAAGGGTCGTAACGACTACAACTGTGATTTCTCTGGAACTGGACTCATCACCACTGTCGACCCAAGTCACGGTCAGTGTCGCTATCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

237

Amino Acids

24.98

Weight (kDa)

6.67

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 101	3.4e-16	X8 domain
X8	PF07983	153 - 221	3.4e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	678
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	2 cut(s)	51, 522
AcsI	RAATTY	1 cut(s)	604
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
AgsI	TTSAA	2 cut(s)	457, 491
AhdI	GACNNNNNGTC	1 cut(s)	624
AjnI	CCWGG	5 cut(s)	159, 190, 430, 448, 550
AluBI	AGCT	3 cut(s)	267, 362, 507
AluI	AGCT	3 cut(s)	267, 362, 507
Alw26I	GTCTC	1 cut(s)	432
Ama87I	CYCGRG	2 cut(s)	225, 585
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	2 cut(s)	82, 162
ApeKI	GCWGC	2 cut(s)	69, 362
ApoI	RAATTY	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	83, 446, 582
AsuC2I	CCSGG	3 cut(s)	226, 227, 381
AsuHPI	GGTGA	2 cut(s)	420, 661
AvaI	CYCGRG	2 cut(s)	225, 585
AvaII	GGWCC	2 cut(s)	446, 582
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	81, 349
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BcnI	CCSGG	3 cut(s)	226, 227, 381
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	117, 272
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	3 cut(s)	70, 363, 523
BlsI	GCNGC	3 cut(s)	71, 364, 524
Bme1390I	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
Bme18I	GGWCC	2 cut(s)	446, 582
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmeT110I	CYCGRG	2 cut(s)	225, 585
BmgT120I	GGNCC	3 cut(s)	83, 446, 582
BmiI	GGNNCC	4 cut(s)	85, 280, 298, 584
BmrFI	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
BmsI	GCATC	3 cut(s)	52, 239, 599
BoxI	GACNNNNGTC	2 cut(s)	444, 684
BpuMI	CCSGG	3 cut(s)	226, 227, 381
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 431, 689
Bse118I	RCCGGY	2 cut(s)	65, 80
Bse1I	ACTGG	3 cut(s)	340, 518, 664
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	230, 590
BseLI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	340, 518, 664
BseRI	GAGGAG	4 cut(s)	20, 23, 123, 450
BseXI	GCAGC	2 cut(s)	81, 349
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	84, 164
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	225, 585
BsiSI	CCGG	5 cut(s)	66, 81, 226, 300, 380
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	2 cut(s)	250, 539
BsnI	GGCC	2 cut(s)	84, 164
BsoBI	CYCGRG	2 cut(s)	225, 585
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	51, 522
BspANI	GGCC	2 cut(s)	84, 164
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	85, 280, 298, 584
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	65, 80
BsrI	ACTGG	3 cut(s)	340, 518, 664
BssAI	RCCGGY	2 cut(s)	65, 80
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
Bst4CI	ACNGT	3 cut(s)	644, 676, 692
BstAPI	GCANNNNNTGC	2 cut(s)	245, 596
BstC8I	GCNNGC	4 cut(s)	67, 82, 166, 562
BstDEI	CTNAG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	230, 590
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
BstNI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BstPAI	GACNNNNGTC	2 cut(s)	444, 684
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	8 cut(s)	159, 190, 224, 225, 379, 430, 448, 550
BstV1I	GCAGC	2 cut(s)	81, 349
BsuRI	GGCC	2 cut(s)	84, 164
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	230, 590
BtsIMutI	CAGTG	2 cut(s)	672, 701
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	4 cut(s)	67, 82, 166, 562
Cfr10I	RCCGGY	2 cut(s)	65, 80
Cfr13I	GGNCC	3 cut(s)	83, 446, 582
Cfr9I	CCCGGG	1 cut(s)	225
CsiI	ACCWGGT	2 cut(s)	190, 550
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	479, 526
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	508
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	275
DrdI	GACNNNNNNGTC	1 cut(s)	575
DriI	GACNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	575
Eam1105I	GACNNNNNGTC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	446, 582
Eco88I	CYCGRG	2 cut(s)	225, 585
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	5 cut(s)	159, 190, 430, 448, 550
FaeI	CATG	2 cut(s)	482, 529
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	2 cut(s)	478, 525
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	70, 363, 523
FokI	GGATG	2 cut(s)	217, 577
Fsp4HI	GCNGC	3 cut(s)	70, 363, 523
FspBI	CTAG	2 cut(s)	117, 272
GluI	GCNGC	3 cut(s)	70, 363, 523
HaeIII	GGCC	2 cut(s)	84, 164
HapII	CCGG	5 cut(s)	66, 81, 226, 300, 380
Hin1II	CATG	2 cut(s)	482, 529
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	2 cut(s)	572, 663
HpaII	CCGG	5 cut(s)	66, 81, 226, 300, 380
HphI	GGTGA	2 cut(s)	420, 661
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	618
Hpy188III	TCNNGA	3 cut(s)	300, 585, 654
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	244, 435
HpyCH4III	ACNGT	3 cut(s)	644, 676, 692
HpyCH4V	TGCA	3 cut(s)	365, 465, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
HpyF3I	CTNAG	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	482, 529
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	2 cut(s)	65, 80
KroNI	GCCGGC	2 cut(s)	67, 82
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	2 cut(s)	81, 349
LweI	GCATC	3 cut(s)	52, 239, 599
MabI	ACCWGGT	2 cut(s)	190, 550
MaeI	CTAG	2 cut(s)	117, 272
MaeIII	GTNAC	4 cut(s)	4, 155, 629, 686
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	698
MluCI	AATT	3 cut(s)	172, 369, 604
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	41, 44, 101, 104, 428
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	65, 80
MseI	TTAA	1 cut(s)	372
MspI	CCGG	5 cut(s)	66, 81, 226, 300, 380
MspR9I	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
Mva1269I	GAATGC	2 cut(s)	250, 539
MvaI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
MwoI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
NaeI	GCCGGC	2 cut(s)	67, 82
NciI	CCSGG	3 cut(s)	226, 227, 381
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	2 cut(s)	65, 80
NlaIII	CATG	2 cut(s)	482, 529
NlaIV	GGNNCC	4 cut(s)	85, 280, 298, 584
NmuCI	GTSAC	2 cut(s)	4, 686
PaqCI	CACCTGC	1 cut(s)	290
PctI	GAATGC	2 cut(s)	250, 539
PdiI	GCCGGC	2 cut(s)	67, 82
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	71, 364, 524
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	582
PshAI	GACNNNNGTC	2 cut(s)	444, 684
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	5 cut(s)	159, 190, 430, 448, 550
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	159, 190, 430, 448, 550
PspN4I	GGNNCC	4 cut(s)	85, 280, 298, 584
PspPI	GGNCC	3 cut(s)	83, 446, 582
PspPPI	RGGWCCY	1 cut(s)	582
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	70, 363, 523
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	83, 446, 582
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
SexAI	ACCWGGT	2 cut(s)	190, 550
SfaNI	GCATC	3 cut(s)	52, 239, 599
SinI	GGWCC	2 cut(s)	446, 582
SmaI	CCCGGG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	172, 369, 604
SsiI	CCGC	2 cut(s)	51, 522
SspMI	CTAG	2 cut(s)	117, 272
StyD4I	CCNGG	8 cut(s)	159, 190, 224, 225, 379, 430, 448, 550
TaaI	ACNGT	3 cut(s)	644, 676, 692
TaqI	TCGA	1 cut(s)	678
TasI	AATT	3 cut(s)	172, 369, 604
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	679, 701
TseFI	GTSAC	2 cut(s)	4, 686
TseI	GCWGC	2 cut(s)	69, 362
Tsp45I	GTSAC	2 cut(s)	4, 686
TspDTI	ATGAA	2 cut(s)	257, 617
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	2 cut(s)	679, 701
VpaK11BI	GGWCC	2 cut(s)	446, 582
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	429
XapI	RAATTY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 456
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	2 cut(s)	117, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.