Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

3441292 .. 3442947

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAAACAGACTCACTCCCTAGCCTCCCAAGTTTCCTTATTAATAGAGGAACCCTCGTGCACTCTAAGCACAAAACAAACTCCACCTGCCCTACACAAAAACTAAAGTCACAAAAAATGGCAGCTCATCCATTGTCTTTGGCTTCTATAGCCCTCTCTCTTGTTCTTCTCAATCTACATATGCATGGTGTGTTGGCTGTTTATGGTAGCTGGGAAGGTGCTCATGCCACATTTTACGGCGGTGGTGATGCCTCCGGCACAATGGGAGGAGCATGTGGTTATGGGAATCTGTACAGCCAGGGGTATGGAACCAACACTGCAGCTTTGAGCACAGCATTGTTCAACAATGGCTTGAGCTGTGGATCTTGTTATGAAATGATGTGCAACAATGACCCGAGATGGTGCCGTCCTGGATCCATTATTGTTACTGCTACAAACTTTTGCCCTCCTAACTTTGCTGAGTCCAACGACAATGGCGGATGGTGCAATCCTCCTCTCCAGCACTTCGATTTGGCCGAGCCTGCTTTCTTGCAGATTGCTCAATACCGTGCTGGAATCGTGCCAGTTTCCTTCAGAAGAGTACCTTGTATGAAGAAAGGAGGAATAAGATTCACCATCAACGGCCACTCCTACTTCAACCTGGTTTTGATCACCAACGTGGCTGGTGCAGGAGACGTCCATTCAGTTTCAATCAAGGGGTCCAGAACAGGGTGGCAACCCATGTCAAGAAACTGGGGTCAAAACTGGCAGAGCAACTCTTACCTCAATGGCCAAGCCCTCTCCTTCCAAGTCACCACCAGTGACGGTAGAACCGTCACGAGCTACAACGTGGCGCCTGGTAATTGGCAGTTTGGCCAGACATTCTCAGGGGGGCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

294

Amino Acids

31.52

Weight (kDa)

8.99

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	95
AccB1I	GGYRCC	2 cut(s)	402, 832
AciI	CCGC	2 cut(s)	240, 477
AclWI	GGATC	3 cut(s)	370, 408, 421
AcoI	YGGCCR	4 cut(s)	513, 622, 769, 853
AcuI	CTGAAG	1 cut(s)	556
AcyI	GRCGYC	2 cut(s)	675, 833
AfaI	GTAC	2 cut(s)	293, 582
AfiI	CCNNNNNNNGG	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	343, 637, 690
AjnI	CCWGG	4 cut(s)	297, 409, 639, 835
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	5 cut(s)	125, 210, 323, 357, 822
AluI	AGCT	5 cut(s)	125, 210, 323, 357, 822
Alw21I	GWGCWC	3 cut(s)	63, 223, 332
Alw26I	GTCTC	1 cut(s)	666
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	3 cut(s)	370, 408, 421
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	4 cut(s)	513, 622, 769, 853
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	122, 320
AseI	ATTAAT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	699
AsuHPI	GGTGA	4 cut(s)	257, 604, 643, 784
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	2 cut(s)	771, 855
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	2 cut(s)	402, 832
BauI	CACGAG	2 cut(s)	56, 817
Bbv12I	GWGCWC	3 cut(s)	63, 223, 332
BbvI	GCAGC	2 cut(s)	134, 332
BccI	CCATC	3 cut(s)	393, 474, 623
BceAI	ACGGC	3 cut(s)	253, 390, 637
BciT130I	CCWGG	4 cut(s)	299, 411, 641, 837
BclI	TGATCA	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	147, 318
BfoI	RGCGCY	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	123, 321
BlsI	GCNGC	2 cut(s)	124, 322
Bme1390I	CCNGG	4 cut(s)	299, 411, 641, 837
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	6 cut(s)	52, 310, 404, 415, 700, 834
BmrFI	CCNGG	4 cut(s)	299, 411, 641, 837
BmrI	ACTGGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	373
BsaHI	GRCGYC	2 cut(s)	675, 833
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse1I	ACTGG	4 cut(s)	563, 737, 749, 798
BseBI	CCWGG	4 cut(s)	299, 411, 641, 837
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	127, 485
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	450, 879
BseNI	ACTGG	4 cut(s)	563, 737, 749, 798
BseRI	GAGGAG	2 cut(s)	282, 483
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	134, 332
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	4 cut(s)	515, 624, 771, 855
BshNI	GGYRCC	2 cut(s)	402, 832
BsiHKAI	GWGCWC	3 cut(s)	63, 223, 332
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	1 cut(s)	666
BsmBI	CGTCTC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	515, 624, 771, 855
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	63, 223, 332
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	362, 413, 648
BspACI	CCGC	2 cut(s)	240, 477
BspANI	GGCC	4 cut(s)	515, 624, 771, 855
BspCNI	CTCAG	2 cut(s)	451, 878
BspLI	GGNNCC	6 cut(s)	52, 310, 404, 415, 700, 834
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	3 cut(s)	370, 408, 421
BspT107I	GGYRCC	2 cut(s)	402, 832
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	563, 737, 749, 798
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	362, 413, 648
BssNI	GRCGYC	2 cut(s)	675, 833
BssSI	CACGAG	2 cut(s)	56, 817
Bst2BI	CACGAG	2 cut(s)	56, 817
Bst2UI	CCWGG	4 cut(s)	299, 411, 641, 837
Bst4CI	ACNGT	3 cut(s)	548, 806, 814
Bst6I	CTCTTC	1 cut(s)	571
BstACI	GRCGYC	2 cut(s)	675, 833
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	66, 459, 865
BstF5I	GGATG	2 cut(s)	127, 485
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	3 cut(s)	365, 416, 651
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	3 cut(s)	362, 413, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 149, 483, 521
BstNI	CCWGG	4 cut(s)	299, 411, 641, 837
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	4 cut(s)	297, 409, 639, 835
BstSFI	CTRYAG	2 cut(s)	147, 318
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	134, 332
BstX2I	RGATCY	2 cut(s)	362, 413
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	362, 413
BsuRI	GGCC	4 cut(s)	515, 624, 771, 855
BtsCI	GGATG	2 cut(s)	127, 485
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 805
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	699
CsiI	ACCWGGT	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	292, 581
CviAII	CATG	4 cut(s)	185, 224, 273, 721
CviQI	GTAC	2 cut(s)	292, 581
DdeI	CTNAG	3 cut(s)	66, 459, 865
DinI	GGCGCC	1 cut(s)	834
DpnI	GATC	3 cut(s)	364, 415, 650
DpnII	GATC	3 cut(s)	362, 413, 648
EaeI	YGGCCR	4 cut(s)	513, 622, 769, 853
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
EciI	GGCGGA	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	394
EcoRII	CCWGG	4 cut(s)	297, 409, 639, 835
EcoT22I	ATGCAT	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	834
EheI	GGCGCC	1 cut(s)	834
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	4 cut(s)	188, 227, 276, 724
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FatI	CATG	4 cut(s)	184, 223, 272, 720
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	2 cut(s)	123, 321
FokI	GGATG	2 cut(s)	114, 492
Fsp4HI	GCNGC	2 cut(s)	123, 321
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	2 cut(s)	123, 321
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	836
HaeIII	GGCC	4 cut(s)	515, 624, 771, 855
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	2 cut(s)	675, 833
Hin1II	CATG	4 cut(s)	188, 227, 276, 724
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HinfI	GANTC	5 cut(s)	11, 286, 461, 555, 609
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	4 cut(s)	257, 604, 643, 784
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	575
Hpy188III	TCNNGA	3 cut(s)	702, 726, 817
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	209, 580, 793
HpyCH4III	ACNGT	3 cut(s)	548, 806, 814
HpyCH4IV	ACGT	3 cut(s)	657, 675, 828
HpyCH4V	TGCA	8 cut(s)	4, 61, 184, 320, 384, 486, 532, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 149, 483, 521
HpyF3I	CTNAG	3 cut(s)	66, 459, 865
HpySE526I	ACGT	3 cut(s)	657, 675, 828
Hsp92I	GRCGYC	2 cut(s)	675, 833
Hsp92II	CATG	4 cut(s)	188, 227, 276, 724
HspAI	GCGC	1 cut(s)	833
KasI	GGCGCC	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	362, 413, 648
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	134, 332
LweI	GCATC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	639
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	3 cut(s)	657, 675, 828
MaeIII	GTNAC	5 cut(s)	108, 424, 790, 800, 814
MalI	GATC	3 cut(s)	364, 415, 650
MboI	GATC	3 cut(s)	362, 413, 648
MboII	GAAGA	3 cut(s)	158, 588, 604
MflI	RGATCY	2 cut(s)	362, 413
MhlI	GDGCHC	3 cut(s)	63, 223, 332
MlsI	TGGCCA	2 cut(s)	771, 855
MluCI	AATT	2 cut(s)	841, 875
MluNI	TGGCCA	2 cut(s)	771, 855
Mly113I	GGCGCC	1 cut(s)	833
MlyI	GAGTC	2 cut(s)	5, 470
MmeI	TCCRAC	1 cut(s)	489
Mox20I	TGGCCA	2 cut(s)	771, 855
Mph1103I	ATGCAT	1 cut(s)	186
MscI	TGGCCA	2 cut(s)	771, 855
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	2 cut(s)	183, 656
Msp20I	TGGCCA	2 cut(s)	771, 855
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	4 cut(s)	299, 411, 641, 837
MvaI	CCWGG	4 cut(s)	299, 411, 641, 837
MwoI	GCNNNNNNNGC	4 cut(s)	67, 149, 483, 521
NarI	GGCGCC	1 cut(s)	833
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	362, 413, 648
NlaIII	CATG	4 cut(s)	188, 227, 276, 724
NlaIV	GGNNCC	6 cut(s)	52, 310, 404, 415, 700, 834
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	4 cut(s)	108, 790, 800, 814
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 810
PfeI	GAWTC	3 cut(s)	286, 555, 609
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	124, 322
PleI	GAGTC	2 cut(s)	5, 469
PluTI	GGCGCC	1 cut(s)	836
PpsI	GAGTC	2 cut(s)	5, 469
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	297, 409, 639, 835
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	4 cut(s)	297, 409, 639, 835
PspN4I	GGNNCC	6 cut(s)	52, 310, 404, 415, 700, 834
PspPI	GGNCC	1 cut(s)	699
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	362, 413
RsaI	GTAC	2 cut(s)	293, 582
RsaNI	GTAC	2 cut(s)	292, 581
RseI	CAYNNNNRTG	2 cut(s)	183, 656
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	123, 321
Sau3AI	GATC	3 cut(s)	362, 413, 648
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	2 cut(s)	5, 470
ScrFI	CCNGG	4 cut(s)	299, 411, 641, 837
SduI	GDGCHC	3 cut(s)	63, 223, 332
SexAI	ACCWGGT	1 cut(s)	639
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	2 cut(s)	147, 318
SfoI	GGCGCC	1 cut(s)	834
SinI	GGWCC	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	183, 656
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	841, 875
SsiI	CCGC	2 cut(s)	240, 477
SspDI	GGCGCC	1 cut(s)	832
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	4 cut(s)	297, 409, 639, 835
TaaI	ACNGT	3 cut(s)	548, 806, 814
TaiI	ACGT	3 cut(s)	660, 678, 831
TaqI	TCGA	1 cut(s)	507
TasI	AATT	2 cut(s)	841, 875
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	286, 555, 609
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	322, 805
TseFI	GTSAC	4 cut(s)	108, 790, 800, 814
TseI	GCWGC	2 cut(s)	122, 320
Tsp45I	GTSAC	4 cut(s)	108, 790, 800, 814
TspDTI	ATGAA	2 cut(s)	387, 605
TspRI	CASTG	2 cut(s)	322, 805
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	699
VspI	ATTAAT	1 cut(s)	42
XceI	RCATGY	1 cut(s)	276
XspI	CTAG	1 cut(s)	21
ZraI	GACGTC	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.