Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

72830127 .. 72832194

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG520700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAGCTTCAGCATTGTCTCTAGCTCCTCTAGCTCTTCTCGTTCTCTTCAATCTCCATTTTCACTCTACTTTTGCCGATTATGGTGGTTGGAACGGCGGCCACGCCACATTCTATGGTGGTGGTGATGCCTCAGGCACAATGGGAGGAGCATGTGGTTATGGGAACTTATATAGCCAAGGGTATGGAACCAACACTGCAGCACTGAGCACAGCTTTGTTCAACGATGGCTTGAGCTGTGGCTCTTGCTATGAAATGAGGTGTGACAATGACCCGAGGTGGTGCCGCCCCGGAAGCATCATTGTGACTGCTACCAACTTCTGCCCTCCTAACTTTGCGCAGGCCAATGACAATGGCGGTTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCTGAGCCTGCTTTCTTGCAAATCGCACAATACCGTGCCGGAATTGTTCCCGTTGCCTTCAGAAGAGTACCATGTGTGAAGAAAGGAGGAATAAGGTTCACCATCAATGGTCACTCCTACTTCAATCTTGTTCTGATCACCAACGTCGGCGGTGCAGGGGATGTTCATTCGGTTTCGATCAAGGGGTCCAGAACTGGTTGGCAATCCATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAACTCATACCTCAACGGCCAACTCCTCTCCTTCCAAGTCACCACCAGTGACGGTAGAACCGTGACAAGCTACAACGTGGCGCCGGGTAATTGGCAGTTTGGCCAGACTTACCAAGGGGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.14

Weight (kDa)

8.12

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 156	2.4e-07	EXPB1-like domain 1
DPBB_1	PF03330	66 - 150	7.2e-23	Lytic transglycolase
Expansin_C	PF01357	162 - 239	6.1e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	282, 712
AciI	CCGC	4 cut(s)	99, 286, 357, 543
AcoI	YGGCCR	3 cut(s)	100, 649, 733
AcuI	CTGAAG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	52, 223, 517
AluBI	AGCT	6 cut(s)	8, 26, 35, 215, 237, 702
AluI	AGCT	6 cut(s)	8, 26, 35, 215, 237, 702
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	5 cut(s)	100, 342, 616, 649, 733
ApeKI	GCWGC	2 cut(s)	5, 200
AspLEI	GCGC	2 cut(s)	340, 715
AspS9I	GGNCC	2 cut(s)	579, 616
AsuC2I	CCSGG	2 cut(s)	291, 717
AsuHPI	GGTGA	4 cut(s)	137, 484, 523, 664
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	579
AxyI	CCTNAGG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	282, 712
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	17, 212
BccI	CCATC	2 cut(s)	221, 503
BceAI	ACGGC	2 cut(s)	112, 664
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	291, 717
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	3 cut(s)	23, 32, 760
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	716
BisI	GCNGC	4 cut(s)	6, 100, 201, 286
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	4 cut(s)	7, 101, 202, 287
Bme1390I	CCNGG	2 cut(s)	291, 717
Bme18I	GGWCC	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	579, 616
BmiI	GGNNCC	5 cut(s)	190, 284, 580, 617, 714
BmrFI	CCNGG	2 cut(s)	291, 717
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	118, 306
BmuI	ACTGGG	1 cut(s)	622
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	2 cut(s)	291, 717
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	4 cut(s)	178, 275, 289, 745
Bse1I	ACTGG	4 cut(s)	592, 617, 629, 678
Bse21I	CCTNAGG	1 cut(s)	133
BseDI	CCNNGG	4 cut(s)	178, 275, 289, 745
BseGI	GGATG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	147, 197, 387
BseNI	ACTGG	4 cut(s)	592, 617, 629, 678
BseRI	GAGGAG	3 cut(s)	18, 162, 647
BseXI	GCAGC	2 cut(s)	17, 212
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	5 cut(s)	102, 344, 618, 651, 735
BshNI	GGYRCC	2 cut(s)	282, 712
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	291, 432, 716
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	102, 344, 618, 651, 735
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	528, 570
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	99, 286, 357, 543
BspANI	GGCC	5 cut(s)	102, 344, 618, 651, 735
BspCNI	CTCAG	3 cut(s)	146, 198, 388
BspLI	GGNNCC	5 cut(s)	190, 284, 580, 617, 714
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	2 cut(s)	282, 712
BsrI	ACTGG	4 cut(s)	592, 617, 629, 678
BssECI	CCNNGG	4 cut(s)	178, 275, 289, 745
BssMI	GATC	2 cut(s)	528, 570
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	2 cut(s)	178, 745
Bst4CI	ACNGT	3 cut(s)	428, 686, 694
Bst6I	CTCTTC	3 cut(s)	42, 53, 451
BstACI	GRCGYC	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	342, 402
BstDEI	CTNAG	3 cut(s)	133, 206, 396
BstF5I	GGATG	1 cut(s)	559
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	2 cut(s)	340, 715
BstKTI	GATC	2 cut(s)	531, 573
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	528, 570
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 401
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	289, 715
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	17, 212
BstXI	CCANNNNNNTGG	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	102, 344, 618, 651, 735
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 203, 685
Cac8I	GCNNGC	2 cut(s)	342, 402
CfoI	GCGC	2 cut(s)	340, 715
Cfr13I	GGNCC	2 cut(s)	579, 616
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	3 cut(s)	153, 465, 601
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	3 cut(s)	133, 206, 396
DinI	GGCGCC	1 cut(s)	714
DpnI	GATC	2 cut(s)	530, 572
DpnII	GATC	2 cut(s)	528, 570
EaeI	YGGCCR	3 cut(s)	100, 649, 733
Eam1104I	CTCTTC	3 cut(s)	42, 53, 451
EarI	CTCTTC	3 cut(s)	42, 53, 451
Eco130I	CCWWGG	2 cut(s)	178, 745
Eco47I	GGWCC	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	178, 745
EgeI	GGCGCC	1 cut(s)	714
EheI	GGCGCC	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	178, 745
FaeI	CATG	3 cut(s)	156, 468, 604
FatI	CATG	3 cut(s)	152, 464, 600
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	4 cut(s)	6, 100, 201, 286
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	6, 100, 201, 286
FspBI	CTAG	3 cut(s)	23, 32, 760
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	2 cut(s)	339, 714
GluI	GCNGC	4 cut(s)	6, 100, 201, 286
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	5 cut(s)	102, 344, 618, 651, 735
HapII	CCGG	3 cut(s)	291, 432, 716
HhaI	GCGC	2 cut(s)	340, 715
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	3 cut(s)	156, 468, 604
Hin6I	GCGC	2 cut(s)	338, 713
HinP1I	GCGC	2 cut(s)	338, 713
HpaII	CCGG	3 cut(s)	291, 432, 716
HphI	GGTGA	4 cut(s)	137, 484, 523, 664
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	455, 528
Hpy188III	TCNNGA	2 cut(s)	582, 606
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	460, 673
HpyCH4III	ACNGT	3 cut(s)	428, 686, 694
HpyCH4IV	ACGT	2 cut(s)	537, 708
HpyCH4V	TGCA	4 cut(s)	200, 366, 412, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 401
HpyF3I	CTNAG	3 cut(s)	133, 206, 396
HpySE526I	ACGT	2 cut(s)	537, 708
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	3 cut(s)	156, 468, 604
HspAI	GCGC	2 cut(s)	338, 713
KasI	GGCGCC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	528, 570
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	31, 149
Lsp1109I	GCAGC	2 cut(s)	17, 212
LweI	GCATC	2 cut(s)	118, 306
MaeI	CTAG	3 cut(s)	23, 32, 760
MaeII	ACGT	2 cut(s)	537, 708
MaeIII	GTNAC	6 cut(s)	263, 304, 503, 670, 680, 694
MalI	GATC	2 cut(s)	530, 572
MboI	GATC	2 cut(s)	528, 570
MboII	GAAGA	4 cut(s)	29, 40, 468, 484
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	3 cut(s)	435, 721, 755
MluNI	TGGCCA	1 cut(s)	735
Mly113I	GGCGCC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	3 cut(s)	291, 432, 716
MspR9I	CCNGG	2 cut(s)	291, 717
MwoI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 401
NarI	GGCGCC	1 cut(s)	713
NciI	CCSGG	2 cut(s)	291, 717
NdeII	GATC	2 cut(s)	528, 570
NlaIII	CATG	3 cut(s)	156, 468, 604
NlaIV	GGNNCC	5 cut(s)	190, 284, 580, 617, 714
NmuCI	GTSAC	6 cut(s)	263, 304, 503, 670, 680, 694
NsbI	TGCGCA	1 cut(s)	339
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	7, 101, 202, 287
PluTI	GGCGCC	1 cut(s)	716
PspN4I	GGNNCC	5 cut(s)	190, 284, 580, 617, 714
PspPI	GGNCC	2 cut(s)	579, 616
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	4 cut(s)	6, 100, 201, 286
Sau3AI	GATC	2 cut(s)	528, 570
Sau96I	GGNCC	2 cut(s)	579, 616
ScrFI	CCNGG	2 cut(s)	291, 717
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	118, 306
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	714
SinI	GGWCC	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	435, 721, 755
SsiI	CCGC	4 cut(s)	99, 286, 357, 543
SspDI	GGCGCC	1 cut(s)	712
SspMI	CTAG	3 cut(s)	23, 32, 760
StyD4I	CCNGG	2 cut(s)	289, 715
StyI	CCWWGG	2 cut(s)	178, 745
TaaI	ACNGT	3 cut(s)	428, 686, 694
TaiI	ACGT	2 cut(s)	540, 711
TaqI	TCGA	2 cut(s)	387, 569
TasI	AATT	3 cut(s)	435, 721, 755
TauI	GCSGC	2 cut(s)	102, 288
TscAI	CASTG	3 cut(s)	202, 210, 685
TseFI	GTSAC	6 cut(s)	263, 304, 503, 670, 680, 694
TseI	GCWGC	2 cut(s)	5, 200
Tsp45I	GTSAC	6 cut(s)	263, 304, 503, 670, 680, 694
TspDTI	ATGAA	2 cut(s)	267, 548
TspRI	CASTG	3 cut(s)	202, 210, 685
VpaK11BI	GGWCC	1 cut(s)	579
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	3 cut(s)	23, 32, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.