Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

63014527 .. 63016305

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG355100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTTTGGTTATTGCAGGAGGTGCTTGTGGATATGGAAACTTGTACAGCCAAGGGTATGGAACCAACACTGCAGCACTGAGCACAGCTCTGTTCAACGATGGCTTGAGCTGCGGGTCTTGTTACGAAATGCGATGTGACAATGACCCTAAATGGTGCCTTCCCGGAAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTGGCTCAGTCCAATGACAATGGTGGCTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCTGAGCCGGCTTTCTTGCAAATCGCTCAGTACCGGGCTGGAATCGTCCCCGTCTCATTCAGAAGGGTTGCTTGTGTGAAAAAGGGAGGAATCAGATTCACAATCAACGGCCACTCCTACTTCAACTTGGTTTTGATCACAAACGTTGGAGGAGCAGGAGATGTGCACTCGGTTTCGATCAAGGGCTCAAAGACTGGTTGGCAATCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTACCTCAATGGACAGACCCTTTCTTTCCAGGTCACAACCAGTGACGGTAGGACTGTGACCGCCAACAACGTTGCCCCTGGTAACTGGCAGTTCGGTCAAACATTTTCAGGCAGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

211

Amino Acids

22.72

Weight (kDa)

8.44

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	8 - 115	2.8e-06	EXPB1-like domain 1
DPBB_1	PF03330	24 - 109	9e-23	Lytic transglycolase
Expansin_C	PF01357	120 - 197	8.4e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	3 cut(s)	114, 183, 573
AclI	AACGTT	2 cut(s)	411, 582
AcoI	YGGCCR	1 cut(s)	376
AfaI	GTAC	2 cut(s)	47, 299
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	97, 391
AjnI	CCWGG	2 cut(s)	540, 589
AluBI	AGCT	2 cut(s)	89, 111
AluI	AGCT	2 cut(s)	89, 111
Alw21I	GWGCWC	2 cut(s)	86, 435
Alw26I	GTCTC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	376, 490
ApaLI	GTGCAC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	74, 111
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	2 cut(s)	165, 302
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	86, 435
BbvI	GCAGC	2 cut(s)	86, 98
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	542, 591
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	2 cut(s)	165, 302
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	634
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	2 cut(s)	75, 112
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	2 cut(s)	76, 113
Bme1390I	CCNGG	4 cut(s)	165, 302, 542, 591
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	64, 158, 491
BmrFI	CCNGG	4 cut(s)	165, 302, 542, 591
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	496
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	2 cut(s)	165, 302
BsaJI	CCNNGG	2 cut(s)	52, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	5 cut(s)	466, 491, 503, 552, 602
BseBI	CCWGG	2 cut(s)	542, 591
BseDI	CCNNGG	2 cut(s)	52, 589
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	4 cut(s)	71, 227, 261, 308
BseNI	ACTGG	5 cut(s)	466, 491, 503, 552, 602
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	86, 98
BshFI	GGCC	2 cut(s)	378, 492
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	86, 435
BsiSI	CCGG	3 cut(s)	165, 275, 301
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	378, 492
Bsp1286I	GDGCHC	3 cut(s)	86, 435, 455
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	402, 444
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	3 cut(s)	114, 183, 573
BspANI	GGCC	2 cut(s)	378, 492
BspCNI	CTCAG	4 cut(s)	72, 226, 262, 307
BspLI	GGNNCC	3 cut(s)	64, 158, 491
BspMAI	CTGCAG	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	5 cut(s)	466, 491, 503, 552, 602
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	52, 589
BssMI	GATC	2 cut(s)	402, 444
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	542, 591
Bst4CI	ACNGT	2 cut(s)	560, 568
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	80, 213, 270, 294
BstKTI	GATC	2 cut(s)	405, 447
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	402, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 111, 275
BstNI	CCWGG	2 cut(s)	542, 591
BstSCI	CCNGG	4 cut(s)	163, 300, 540, 589
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	86, 98
BstXI	CCANNNNNNTGG	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	378, 492
BtgZI	GCGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 77, 559
Cac8I	GCNNGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	46, 298
CviAII	CATG	1 cut(s)	475
CviQI	GTAC	2 cut(s)	46, 298
DdeI	CTNAG	4 cut(s)	80, 213, 270, 294
DpnI	GATC	2 cut(s)	404, 446
DpnII	GATC	2 cut(s)	402, 444
EaeI	YGGCCR	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	540, 589
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	1 cut(s)	478
FaiI	YATR	3 cut(s)	36, 60, 476
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	474
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	75, 112
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	75, 112
FspBI	CTAG	1 cut(s)	634
GluI	GCNGC	2 cut(s)	75, 112
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	378, 492
HapII	CCGG	3 cut(s)	165, 275, 301
Hin1II	CATG	1 cut(s)	478
HinfI	GANTC	3 cut(s)	309, 357, 363
HpaII	CCGG	3 cut(s)	165, 275, 301
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	329, 362
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	170, 324
HpyCH4III	ACNGT	2 cut(s)	560, 568
HpyCH4IV	ACGT	2 cut(s)	411, 582
HpyCH4V	TGCA	5 cut(s)	17, 74, 240, 286, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 111, 275
HpyF3I	CTNAG	4 cut(s)	80, 213, 270, 294
HpySE526I	ACGT	2 cut(s)	411, 582
Hsp92II	CATG	1 cut(s)	478
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	402, 444
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	2 cut(s)	86, 98
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	634
MaeII	ACGT	2 cut(s)	411, 582
MaeIII	GTNAC	7 cut(s)	122, 137, 178, 544, 554, 568, 593
MalI	GATC	2 cut(s)	404, 446
MboI	GATC	2 cut(s)	402, 444
MhlI	GDGCHC	3 cut(s)	86, 435, 455
MluCI	AATT	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	7 cut(s)	14, 210, 255, 260, 347, 410, 527
MroNI	GCCGGC	1 cut(s)	274
MspI	CCGG	3 cut(s)	165, 275, 301
MspR9I	CCNGG	4 cut(s)	165, 302, 542, 591
MvaI	CCWGG	2 cut(s)	542, 591
MwoI	GCNNNNNNNGC	3 cut(s)	23, 111, 275
NaeI	GCCGGC	1 cut(s)	276
NciI	CCSGG	2 cut(s)	165, 302
NdeII	GATC	2 cut(s)	402, 444
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	3 cut(s)	64, 158, 491
NmuCI	GTSAC	5 cut(s)	137, 178, 544, 554, 568
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	309, 357, 363
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	76, 113
Psp1406I	AACGTT	2 cut(s)	411, 582
Psp6I	CCWGG	2 cut(s)	540, 589
PspGI	CCWGG	2 cut(s)	540, 589
PspN4I	GGNNCC	3 cut(s)	64, 158, 491
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	47, 299
RsaNI	GTAC	2 cut(s)	46, 298
SatI	GCNGC	2 cut(s)	75, 112
Sau3AI	GATC	2 cut(s)	402, 444
Sau96I	GGNCC	1 cut(s)	490
ScrFI	CCNGG	4 cut(s)	165, 302, 542, 591
SduI	GDGCHC	3 cut(s)	86, 435, 455
SetI	ASST	7 cut(s)	25, 91, 113, 414, 519, 546, 585
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	629
SsiI	CCGC	3 cut(s)	114, 183, 573
SspMI	CTAG	1 cut(s)	634
StyD4I	CCNGG	4 cut(s)	163, 300, 540, 589
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	560, 568
TaiI	ACGT	2 cut(s)	414, 585
TaqI	TCGA	2 cut(s)	261, 443
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	1 cut(s)	629
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	3 cut(s)	309, 357, 363
TscAI	CASTG	3 cut(s)	76, 84, 559
TseFI	GTSAC	5 cut(s)	137, 178, 544, 554, 568
TseI	GCWGC	2 cut(s)	74, 111
Tsp45I	GTSAC	5 cut(s)	137, 178, 544, 554, 568
TspRI	CASTG	3 cut(s)	76, 84, 559
VneI	GTGCAC	1 cut(s)	431
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.