Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

30701846 .. 30703901

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1233100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTTTTACTCTTTCTCACTCCACCATTGCTCTTCTGTTCTTTGTCCTCAATATATGTCTTCAAGGTACTTTTGGTGACAATGGAGGTGGATGGGAAGGTGGCCATGCCACATTTTATGGTGGTGGTGATGCCTCTGGTACAATGGGAGGTGCTTGTGGATATGGAAACTTGTATAGTCAAGGGTACGGAACCAACACTGCAGCACTGAGCACAGCTCTCTTCAACGATGGCTTGAGCTGCGGGTCTTGTTATGAGATGAAATGTGATAGTGACCCCAAATGGTGCCTCCCCGGCAGCATCATTGTCACCGCCACCAACTTCTGCCCTCCTAACTTTGCTCAGTCCAACGACAATGGTGGTTGGTGCAACCCTCCTCTCCAGCACTTCGATTTGGCTGAGCCTGCTTTCGAGAAAATCGCTCAGTACCGAGCTGGAATTGTCCCCGTCTCCTTCAGAAGGGTTTCATGTGTGAAGAAGGGAGGAGTAAGATTCACAATCAACGGCCACTCATACTTCAACTTGGTTTTGATCACAAACGTGGGAGGAGCAGGAGATGTGCACTCAGTGTCGATCAAGGGCTCCAACACAGGGTGGCAATCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCTTACCTCAACGGCCAGAGCCTCTCCTTCCAAGTCACCACCAGCGACGGCAGAACTCTCACCGCCAACAATGTTGCGCCGGGCAACTGGCAGTTTGGCCAGACATATGAGGGCAGTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.07

Weight (kDa)

6.16

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	67 - 152	3.3e-23	Lytic transglycolase
Expansin_C	PF01357	163 - 240	7.9e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AciI	CCGC	3 cut(s)	243, 312, 702
AcoI	YGGCCR	4 cut(s)	103, 505, 652, 736
AcuI	CTGAAG	1 cut(s)	439
AdeI	CACNNNGTG	2 cut(s)	568, 594
AfaI	GTAC	4 cut(s)	70, 142, 188, 428
AfiI	CCNNNNNNNGG	3 cut(s)	459, 591, 609
AgsI	TTSAA	3 cut(s)	65, 226, 520
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	218, 240, 434
AluI	AGCT	3 cut(s)	218, 240, 434
Alw21I	GWGCWC	2 cut(s)	215, 564
Alw26I	GTCTC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	560
AoxI	GGCC	5 cut(s)	103, 505, 619, 652, 736
ApaLI	GTGCAC	1 cut(s)	560
ApeKI	GCWGC	3 cut(s)	203, 240, 297
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	1 cut(s)	619
AsuC2I	CCSGG	2 cut(s)	294, 720
AsuHPI	GGTGA	5 cut(s)	89, 140, 301, 667, 691
BaeGI	GKGCMC	1 cut(s)	564
BalI	TGGCCA	2 cut(s)	105, 738
BanI	GGYRCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	215, 564
BbvI	GCAGC	3 cut(s)	215, 227, 309
BccI	CCATC	2 cut(s)	87, 224
BceAI	ACGGC	3 cut(s)	520, 667, 703
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	294, 720
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	204, 241, 298
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	3 cut(s)	205, 242, 299
Bme1390I	CCNGG	2 cut(s)	294, 720
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	4 cut(s)	193, 287, 583, 620
BmrFI	CCNGG	2 cut(s)	294, 720
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	121, 309
BmuI	ACTGGG	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	294, 720
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 591, 609
Bse1I	ACTGG	3 cut(s)	620, 632, 731
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	3 cut(s)	459, 591, 609
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	5 cut(s)	200, 356, 390, 437, 579
BseNI	ACTGG	3 cut(s)	620, 632, 731
BseRI	GAGGAG	3 cut(s)	366, 498, 561
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	215, 227, 309
BshFI	GGCC	5 cut(s)	105, 507, 621, 654, 738
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	215, 564
BsiSI	CCGG	2 cut(s)	294, 719
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	459, 591, 609
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	5 cut(s)	105, 507, 621, 654, 738
Bsp1286I	GDGCHC	3 cut(s)	215, 564, 584
Bsp143I	GATC	2 cut(s)	531, 573
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	3 cut(s)	243, 312, 702
BspANI	GGCC	5 cut(s)	105, 507, 621, 654, 738
BspCNI	CTCAG	5 cut(s)	201, 355, 391, 436, 578
BspLI	GGNNCC	4 cut(s)	193, 287, 583, 620
BspMAI	CTGCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	620, 632, 731
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	531, 573
Bst6I	CTCTTC	2 cut(s)	39, 227
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	209, 342, 399, 423, 565
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	2 cut(s)	534, 576
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	2 cut(s)	531, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 294, 404
BstSCI	CCNGG	2 cut(s)	292, 718
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	215, 227, 309
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	5 cut(s)	105, 507, 621, 654, 738
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	198, 206, 573
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	69, 141, 187, 427
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	3 cut(s)	107, 468, 604
CviQI	GTAC	4 cut(s)	69, 141, 187, 427
DdeI	CTNAG	5 cut(s)	209, 342, 399, 423, 565
DpnI	GATC	2 cut(s)	533, 575
DpnII	GATC	2 cut(s)	531, 573
DraIII	CACNNNGTG	2 cut(s)	568, 594
EaeI	YGGCCR	4 cut(s)	103, 505, 652, 736
Eam1104I	CTCTTC	2 cut(s)	39, 227
EarI	CTCTTC	2 cut(s)	39, 227
Eco24I	GRGCYC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	439
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	584
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	3 cut(s)	110, 471, 607
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	106, 467, 603
FauI	CCCGC	1 cut(s)	236
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	204, 241, 298
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	204, 241, 298
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	3 cut(s)	204, 241, 298
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	5 cut(s)	105, 507, 621, 654, 738
HapII	CCGG	2 cut(s)	294, 719
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	3 cut(s)	110, 471, 607
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HinfI	GANTC	1 cut(s)	492
HpaII	CCGG	2 cut(s)	294, 719
HphI	GGTGA	5 cut(s)	89, 140, 301, 667, 691
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	458, 764
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	5 cut(s)	92, 453, 463, 472, 676
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	203, 369, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 294, 404
HpyF3I	CTNAG	5 cut(s)	209, 342, 399, 423, 565
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	110, 471, 607
HspAI	GCGC	1 cut(s)	716
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	531, 573
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	548, 587
Lsp1109I	GCAGC	3 cut(s)	215, 227, 309
LweI	GCATC	2 cut(s)	121, 309
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	77, 272, 307, 673
MalI	GATC	2 cut(s)	533, 575
MboI	GATC	2 cut(s)	531, 573
MboII	GAAGA	4 cut(s)	26, 53, 214, 487
MhlI	GDGCHC	3 cut(s)	215, 564, 584
MlsI	TGGCCA	2 cut(s)	105, 738
MluCI	AATT	2 cut(s)	438, 758
MluNI	TGGCCA	2 cut(s)	105, 738
MmeI	TCCRAC	2 cut(s)	372, 609
Mox20I	TGGCCA	2 cut(s)	105, 738
MroXI	GAANNNNTTC	1 cut(s)	463
MscI	TGGCCA	2 cut(s)	105, 738
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	2 cut(s)	105, 738
MspI	CCGG	2 cut(s)	294, 719
MspR9I	CCNGG	2 cut(s)	294, 720
MwoI	GCNNNNNNNGC	3 cut(s)	240, 294, 404
NciI	CCSGG	2 cut(s)	294, 720
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	531, 573
NlaIII	CATG	3 cut(s)	110, 471, 607
NlaIV	GGNNCC	4 cut(s)	193, 287, 583, 620
NmuCI	GTSAC	4 cut(s)	77, 272, 307, 673
OliI	CACNNNNGTG	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	3 cut(s)	205, 242, 299
PspN4I	GGNNCC	4 cut(s)	193, 287, 583, 620
PspPI	GGNCC	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	4 cut(s)	70, 142, 188, 428
RsaNI	GTAC	4 cut(s)	69, 141, 187, 427
RseI	CAYNNNNRTG	1 cut(s)	539
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	3 cut(s)	204, 241, 298
Sau3AI	GATC	2 cut(s)	531, 573
Sau96I	GGNCC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	294, 720
SduI	GDGCHC	3 cut(s)	215, 564, 584
SetI	ASST	9 cut(s)	70, 91, 103, 154, 220, 242, 436, 543, 648
SfaNI	GCATC	2 cut(s)	121, 309
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	438, 758
SsiI	CCGC	3 cut(s)	243, 312, 702
StyD4I	CCNGG	2 cut(s)	292, 718
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	390, 411, 572
TasI	AATT	2 cut(s)	438, 758
TfiI	GAWTC	1 cut(s)	492
TscAI	CASTG	3 cut(s)	205, 213, 573
TseFI	GTSAC	4 cut(s)	77, 272, 307, 673
TseI	GCWGC	3 cut(s)	203, 240, 297
Tsp45I	GTSAC	4 cut(s)	77, 272, 307, 673
TspDTI	ATGAA	2 cut(s)	275, 456
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	3 cut(s)	205, 213, 573
VneI	GTGCAC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.