Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

58381529 .. 58382237

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0419700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCCCCACAGTGATATATGTTAAGCCGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTCCCAGTTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

73

Amino Acids

7.96

Weight (kDa)

8.06

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	1 - 68	5.9e-13	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	175, 188
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	2 cut(s)	175, 188
AoxI	GGCC	2 cut(s)	3, 124
AspA2I	CCTAGG	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	108, 128
BlnI	CCTAGG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 182
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	5, 126
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	5, 126
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	5, 126
BspLI	GGNNCC	2 cut(s)	6, 182
BspPI	GGATC	2 cut(s)	175, 188
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	5, 126
BtsIMutI	CAGTG	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	6 cut(s)	5, 28, 71, 126, 134, 191
CviKI_1	RGCY	6 cut(s)	5, 28, 71, 126, 134, 191
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	156
FaiI	YATR	6 cut(s)	19, 21, 41, 104, 144, 154
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	108, 128
HaeIII	GGCC	2 cut(s)	5, 126
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	4 cut(s)	42, 66, 177, 177
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	108, 128
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	207, 215
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	3 cut(s)	47, 77, 181
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	6, 182
PceI	AGGCCT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	6, 182
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	4 cut(s)	58, 88, 109, 136
SfaNI	GCATC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	108, 128
StuI	AGGCCT	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	13
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	18
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	2 cut(s)	108, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.