Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

19688840 .. 19690681

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTTTACTTCATGCTTGGCTATTACTCTTCTGGTATCTGTCCTCAACCTCTGCATCAGAGGCACCTATGCCGACTACGGCGCCGGTTGGGTTGGTGGCCATGCCACTTTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGATATGGAAACTTGTACAGCCAAGGGTATGGAACCAACACTGCAGCACTAAGCACAGCTCTGTTCAACGATGGCTTGAGCTGCGGGTCTTGCTACGAAATGCGATGTGACAATGACCCTAGATGGTGCCTTCCCGGAAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTTGCTCAGGCCAATGACAACGGTGGCTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCCGAGCCTGCCTTCTTGCAAATTGCTCAGTACCGCGCTGGTATCGTCCCCGTCTCATTCAGAAGAGTTGCTTGTGTGAAAAAGGGAGGGATCAGATTCACAATCAACGGGCACTCCTACTTCAACTTGGTTTTGATCACAAACGTTGCAGGAGCAGGAGATGTGCACTCGGTTTCGATCAAAGGCTCCAAGGGTGGTTGGCAATCCATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAACTACCTCAACGGACAAGCCCTGTCTTTTCAGGTCACAACCAGTGACGGCAGGACTGTGACCAGCAACAACGTTGCCCCTGGTAACTGGCAGTTTGGTCAAACGTTTTCAGGCGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

26.89

Weight (kDa)

8.03

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 157	2.6e-07	EXPB1-like domain 1
DPBB_1	PF03330	66 - 151	1.7e-22	Lytic transglycolase
Expansin_C	PF01357	162 - 239	1.9e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	65, 83, 282
AccII	CGCG	1 cut(s)	429
AciI	CCGC	4 cut(s)	240, 309, 427, 750
AclI	AACGTT	3 cut(s)	537, 708, 740
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	2 cut(s)	100, 393
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	173, 425
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	223, 517
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	2 cut(s)	215, 237
AluI	AGCT	2 cut(s)	215, 237
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	451
Alw44I	GTGCAC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	3 cut(s)	100, 342, 393
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	200, 237
AspLEI	GCGC	2 cut(s)	86, 431
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	137, 298
BaeGI	GKGCMC	2 cut(s)	507, 561
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	3 cut(s)	65, 83, 282
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	212, 224
BccI	CCATC	2 cut(s)	221, 273
BceAI	ACGGC	2 cut(s)	97, 700
BciT130I	CCWGG	1 cut(s)	717
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	2 cut(s)	276, 760
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	201, 238
BlsI	GCNGC	2 cut(s)	202, 239
Bme1390I	CCNGG	2 cut(s)	291, 717
BmiI	GGNNCC	5 cut(s)	67, 85, 190, 284, 580
BmrFI	CCNGG	2 cut(s)	291, 717
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	3 cut(s)	66, 118, 306
BmuI	ACTGGG	1 cut(s)	622
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	178, 582, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	617, 629, 678, 728
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	178, 582, 715
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	353, 434
BseNI	ACTGG	4 cut(s)	617, 629, 678, 728
BseSI	GKGCMC	2 cut(s)	507, 561
BseXI	GCAGC	2 cut(s)	212, 224
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	102, 344, 395
BshNI	GGYRCC	3 cut(s)	65, 83, 282
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	87, 291
BslFI	GGGAC	2 cut(s)	425, 630
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	425, 630
BsnI	GGCC	3 cut(s)	102, 344, 395
Bsp1286I	GDGCHC	2 cut(s)	507, 561
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	483, 528, 570
BspACI	CCGC	4 cut(s)	240, 309, 427, 750
BspANI	GGCC	3 cut(s)	102, 344, 395
BspCNI	CTCAG	2 cut(s)	352, 433
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	5 cut(s)	67, 85, 190, 284, 580
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	3 cut(s)	65, 83, 282
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	617, 629, 678, 728
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	178, 582, 715
BssMI	GATC	3 cut(s)	483, 528, 570
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	178, 582
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	356, 694
Bst6I	CTCTTC	2 cut(s)	36, 451
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	206, 339, 420
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 431
BstKTI	GATC	3 cut(s)	486, 531, 573
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	3 cut(s)	483, 528, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 237, 246, 401
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	289, 715
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	2 cut(s)	507, 561
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	212, 224
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	102, 344, 395
BtgZI	GCGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 685
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	2 cut(s)	86, 431
Cfr10I	RCCGGY	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	172, 424
CviAII	CATG	4 cut(s)	15, 104, 153, 601
CviQI	GTAC	2 cut(s)	172, 424
DdeI	CTNAG	3 cut(s)	206, 339, 420
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	3 cut(s)	485, 530, 572
DpnII	GATC	3 cut(s)	483, 528, 570
EaeI	YGGCCR	2 cut(s)	100, 393
Eam1104I	CTCTTC	2 cut(s)	36, 451
EarI	CTCTTC	2 cut(s)	36, 451
Eco130I	CCWWGG	2 cut(s)	178, 582
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	178, 582
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	178, 582
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	4 cut(s)	18, 107, 156, 604
FaiI	YATR	8 cut(s)	16, 72, 105, 117, 154, 162, 186, 602
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	2 cut(s)	425, 630
FatI	CATG	4 cut(s)	14, 103, 152, 600
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	201, 238
Fsp4HI	GCNGC	2 cut(s)	201, 238
FspBI	CTAG	2 cut(s)	276, 760
GlaI	GCGC	2 cut(s)	85, 430
GluI	GCNGC	2 cut(s)	201, 238
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	102, 344, 395
HapII	CCGG	2 cut(s)	87, 291
HhaI	GCGC	2 cut(s)	86, 431
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	18, 107, 156, 604
Hin6I	GCGC	2 cut(s)	84, 429
HinP1I	GCGC	2 cut(s)	84, 429
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	2 cut(s)	87, 291
HphI	GGTGA	2 cut(s)	137, 298
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	62, 455, 488
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	296, 415
HpyCH4III	ACNGT	2 cut(s)	356, 694
HpyCH4IV	ACGT	3 cut(s)	537, 708, 740
HpyCH4V	TGCA	7 cut(s)	57, 152, 200, 366, 412, 542, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 237, 246, 401
HpyF3I	CTNAG	3 cut(s)	206, 339, 420
HpySE526I	ACGT	3 cut(s)	537, 708, 740
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	18, 107, 156, 604
HspAI	GCGC	2 cut(s)	84, 429
KasI	GGCGCC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	483, 528, 570
LmnI	GCTCC	2 cut(s)	545, 584
Lsp1109I	GCAGC	2 cut(s)	212, 224
LweI	GCATC	3 cut(s)	66, 118, 306
MaeI	CTAG	2 cut(s)	276, 760
MaeII	ACGT	3 cut(s)	537, 708, 740
MaeIII	GTNAC	6 cut(s)	263, 304, 670, 680, 694, 719
MalI	GATC	3 cut(s)	485, 530, 572
MboI	GATC	3 cut(s)	483, 528, 570
MboII	GAAGA	2 cut(s)	23, 468
MhlI	GDGCHC	2 cut(s)	507, 561
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	414, 755
MluNI	TGGCCA	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	87, 291
MspR9I	CCNGG	2 cut(s)	291, 717
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	63, 237, 246, 401
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	483, 528, 570
NlaIII	CATG	4 cut(s)	18, 107, 156, 604
NlaIV	GGNNCC	5 cut(s)	67, 85, 190, 284, 580
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	5 cut(s)	263, 304, 670, 680, 694
NspI	RCATGY	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	489
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	202, 239
PluTI	GGCGCC	1 cut(s)	87
Psp1406I	AACGTT	3 cut(s)	537, 708, 740
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	5 cut(s)	67, 85, 190, 284, 580
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	173, 425
RsaNI	GTAC	2 cut(s)	172, 424
SatI	GCNGC	2 cut(s)	201, 238
Sau3AI	GATC	3 cut(s)	483, 528, 570
ScrFI	CCNGG	2 cut(s)	291, 717
SduI	GDGCHC	2 cut(s)	507, 561
SfaNI	GCATC	3 cut(s)	66, 118, 306
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	414, 755
SsiI	CCGC	4 cut(s)	240, 309, 427, 750
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	276, 760
StyD4I	CCNGG	2 cut(s)	289, 715
StyI	CCWWGG	2 cut(s)	178, 582
TaaI	ACNGT	2 cut(s)	356, 694
TaiI	ACGT	3 cut(s)	540, 711, 743
TaqI	TCGA	2 cut(s)	387, 569
TasI	AATT	2 cut(s)	414, 755
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	2 cut(s)	202, 685
TseFI	GTSAC	5 cut(s)	263, 304, 670, 680, 694
TseI	GCWGC	2 cut(s)	200, 237
Tsp45I	GTSAC	5 cut(s)	263, 304, 670, 680, 694
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	202, 685
VneI	GTGCAC	1 cut(s)	557
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	2 cut(s)	276, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.