Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

27148381 .. 27150400

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTTTTACCTCACACTTAGCCATTGCTCTTCTGTTCTCTGTTCTCAATCTATGTCTTCAAGGCACTTATGGTGACTATGGAGGAGGATGGGAAGGTGGTCATGCCACATTTTATGGTGGGGGTGATGCCTCTGGCACAATGGGAGGTGCTTGTGGATATGGAAATTTGTATAGCCAAGGGTATGGAACCAACACTGCAGCTCTCAGCACAGCTCTGTTCAACGATGGCTTGAGCTGTGGGTCTTGTTATGAGATGAGATGTGACAGTGACCCCAAATGGTGCCTCCCCGGCAGCATCATCGTCACTGCCACAAACTTCTGCCCTCCTAACTTAGCTCAGTCTAATGACAATGGTGGCTGGTGCAACCCTCCTCTCCAGCACTTTGATTTGGCTGAGCCTGCCTTCTTACAAATTGCTCAATACCGAGCCGGAATTGTCCCCGTCTCCTTCAGAAGGGTTTCTTGTGTGAAAAAGGGAGGGATAAGATTCACCATCAACGGTCACTCTTACTTCAACTTGGTTTTGATCACAAACGTTGGAGGTGCAGGGGATGTGCACTCTGTTTCAATCAAGGGGTCCAAAACAGGGTGGCAAGCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCTTACCTCAATGGCCAGGCTTTGTCTTTCCAAGTCACCACCAGTGACGGTAGAACTGTGACCAGCAATGCTGTGCCAGCTAACTGGCAGTTTGGTCAAACATTTTCGGGCGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

26.74

Weight (kDa)

6.92

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	1 cut(s)	747
AclI	AACGTT	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	436
AfiI	CCNNNNNNNGG	3 cut(s)	456, 588, 606
AgsI	TTSAA	4 cut(s)	62, 223, 517, 570
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	5 cut(s)	203, 215, 237, 338, 716
AluI	AGCT	5 cut(s)	203, 215, 237, 338, 716
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	451
Alw44I	GTGCAC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	616, 649
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	200, 294
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	579, 616
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	86, 137, 484, 664
AvaII	GGWCC	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	212, 306
BccI	CCATC	3 cut(s)	84, 221, 503
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	1 cut(s)	757
BfmI	CTRYAG	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	201, 295
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	2 cut(s)	202, 296
Bme1390I	CCNGG	2 cut(s)	291, 653
Bme18I	GGWCC	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	579, 616
BmiI	GGNNCC	4 cut(s)	190, 284, 580, 617
BmrFI	CCNGG	2 cut(s)	291, 653
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	118, 306
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	178, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 588, 606
Bse1I	ACTGG	4 cut(s)	617, 629, 678, 725
Bse3DI	GCAATG	2 cut(s)	24, 709
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	178, 289
BseGI	GGATG	2 cut(s)	95, 559
BseLI	CCNNNNNNNGG	3 cut(s)	456, 588, 606
BseMI	GCAATG	2 cut(s)	24, 709
BseMII	CTCAG	3 cut(s)	220, 353, 387
BseNI	ACTGG	4 cut(s)	617, 629, 678, 725
BseRI	GAGGAG	2 cut(s)	99, 363
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	212, 306
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	618, 651
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	291, 432
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	3 cut(s)	456, 588, 606
BsmAI	GTCTC	1 cut(s)	451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	618, 651
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	1 cut(s)	528
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	2 cut(s)	618, 651
BspCNI	CTCAG	3 cut(s)	219, 352, 388
BspLI	GGNNCC	4 cut(s)	190, 284, 580, 617
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	2 cut(s)	24, 709
BsrI	ACTGG	4 cut(s)	617, 629, 678, 725
BssECI	CCNNGG	2 cut(s)	178, 289
BssMI	GATC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	269, 503, 686, 694
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	402, 597, 714
BstDEI	CTNAG	5 cut(s)	19, 206, 334, 339, 396
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	95, 559
BstKTI	GATC	1 cut(s)	531
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	528
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 401, 713
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	289, 651
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	212, 306
BstV2I	GAAGAC	1 cut(s)	50
BstXI	CCANNNNNNTGG	2 cut(s)	185, 720
BsuRI	GGCC	2 cut(s)	618, 651
BtsCI	GGATG	2 cut(s)	95, 559
BtsI	GCAGTG	2 cut(s)	195, 306
BtsIMutI	CAGTG	4 cut(s)	195, 274, 306, 685
Cac8I	GCNNGC	3 cut(s)	402, 597, 714
Cfr13I	GGNCC	2 cut(s)	579, 616
CviAII	CATG	2 cut(s)	104, 601
DdeI	CTNAG	5 cut(s)	19, 206, 334, 339, 396
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	107, 604
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	103, 600
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	201, 295
FokI	GGATG	2 cut(s)	102, 566
Fsp4HI	GCNGC	2 cut(s)	201, 295
FspBI	CTAG	1 cut(s)	757
GluI	GCNGC	2 cut(s)	201, 295
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	618, 651
HapII	CCGG	2 cut(s)	291, 432
Hin1II	CATG	2 cut(s)	107, 604
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	2 cut(s)	291, 432
HphI	GGTGA	4 cut(s)	86, 137, 484, 664
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	4 cut(s)	89, 415, 450, 460
HpyCH4III	ACNGT	4 cut(s)	269, 503, 686, 694
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	4 cut(s)	200, 366, 548, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 401, 713
HpyF3I	CTNAG	5 cut(s)	19, 206, 334, 339, 396
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	107, 604
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	1 cut(s)	528
LguI	GCTCTTC	1 cut(s)	36
Lsp1109I	GCAGC	2 cut(s)	212, 306
LweI	GCATC	2 cut(s)	118, 306
MaeI	CTAG	1 cut(s)	757
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	8 cut(s)	74, 263, 269, 304, 503, 670, 680, 694
MalI	GATC	1 cut(s)	530
MboI	GATC	1 cut(s)	528
MboII	GAAGA	2 cut(s)	23, 50
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	4 cut(s)	166, 414, 435, 752
MluNI	TGGCCA	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	520
Mox20I	TGGCCA	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	651
Msp20I	TGGCCA	1 cut(s)	651
MspI	CCGG	2 cut(s)	291, 432
MspR9I	CCNGG	2 cut(s)	291, 653
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	3 cut(s)	291, 401, 713
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	2 cut(s)	107, 604
NlaIV	GGNNCC	4 cut(s)	190, 284, 580, 617
NmuCI	GTSAC	8 cut(s)	74, 263, 269, 304, 503, 670, 680, 694
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	202, 296
Psp1406I	AACGTT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	4 cut(s)	190, 284, 580, 617
PspPI	GGNCC	2 cut(s)	579, 616
PstI	CTGCAG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	201, 295
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	2 cut(s)	579, 616
ScrFI	CCNGG	2 cut(s)	291, 653
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	118, 306
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	4 cut(s)	166, 414, 435, 752
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	1 cut(s)	757
StyD4I	CCNGG	2 cut(s)	289, 651
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	4 cut(s)	269, 503, 686, 694
TaiI	ACGT	1 cut(s)	540
TasI	AATT	4 cut(s)	166, 414, 435, 752
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	4 cut(s)	202, 274, 313, 685
TseFI	GTSAC	8 cut(s)	74, 263, 269, 304, 503, 670, 680, 694
TseI	GCWGC	2 cut(s)	200, 294
Tsp45I	GTSAC	8 cut(s)	74, 263, 269, 304, 503, 670, 680, 694
TspRI	CASTG	4 cut(s)	202, 274, 313, 685
VneI	GTGCAC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.