Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8393983.1

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 443

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8393983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 304 bp

agtaccatgtgtgaagaaaggaggaataaggttcaccatcaatggtcactcctacttcaatcttgttctgatcaccaacgtcggcggtgcaggggatgttcattcggtttcgatcaaggggtccagaactggttggcaatccatgtcaagaaactggggccaaaactggcagagcaactcatacctcaacggccaactcctctccttccaagtcaccaccagtgacggtagaaccgtgacaagctacaacgtggcgccgggtaattggcagtttggccagacttaccaagggggtcaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

9.9

Isoelectric Point (pI)

15.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	1 cut(s)	85
AcoI	YGGCCR	2 cut(s)	191, 275
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	4
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	3 cut(s)	158, 191, 275
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	121, 158
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	26, 65, 206
AvaII	GGWCC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	254
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 158
BmiI	GGNNCC	3 cut(s)	122, 159, 256
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	287
Bse1I	ACTGG	4 cut(s)	134, 159, 171, 220
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	101
BseNI	ACTGG	4 cut(s)	134, 159, 171, 220
BseRI	GAGGAG	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	160, 193, 277
BshNI	GGYRCC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	258
BsnI	GGCC	3 cut(s)	160, 193, 277
Bsp143I	GATC	2 cut(s)	70, 112
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	3 cut(s)	160, 193, 277
BspLI	GGNNCC	3 cut(s)	122, 159, 256
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	134, 159, 171, 220
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	70, 112
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	228, 236
BstACI	GRCGYC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	73, 115
BstMBI	GATC	2 cut(s)	70, 112
BstSCI	CCNGG	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	160, 193, 277
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	121, 158
Csp6I	GTAC	1 cut(s)	3
CviAII	CATG	2 cut(s)	7, 143
CviJI	RGCY	4 cut(s)	160, 193, 244, 277
CviKI_1	RGCY	4 cut(s)	160, 193, 244, 277
CviQI	GTAC	1 cut(s)	3
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	2 cut(s)	72, 114
DpnII	GATC	2 cut(s)	70, 112
EaeI	YGGCCR	2 cut(s)	191, 275
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	10, 146
FaiI	YATR	3 cut(s)	8, 144, 182
FatI	CATG	2 cut(s)	6, 142
FbaI	TGATCA	1 cut(s)	70
FokI	GGATG	1 cut(s)	108
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	160, 193, 277
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	10, 146
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	26, 65, 206
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	124, 148
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	228, 236
HpyCH4IV	ACGT	2 cut(s)	79, 250
HpyCH4V	TGCA	1 cut(s)	90
HpySE526I	ACGT	2 cut(s)	79, 250
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	10, 146
HspAI	GCGC	1 cut(s)	255
KasI	GGCGCC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 112
LpnPI	CCDG	8 cut(s)	76, 115, 137, 140, 152, 233, 271, 291
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	79, 250
MaeIII	GTNAC	4 cut(s)	45, 212, 222, 236
MalI	GATC	2 cut(s)	72, 114
MboI	GATC	2 cut(s)	70, 112
MboII	GAAGA	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	2 cut(s)	263, 297
MluNI	TGGCCA	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	15, 195, 210
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	277
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	259
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	70, 112
NlaIII	CATG	2 cut(s)	10, 146
NlaIV	GGNNCC	3 cut(s)	122, 159, 256
NmuCI	GTSAC	4 cut(s)	45, 212, 222, 236
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	122, 159, 256
PspPI	GGNCC	2 cut(s)	121, 158
RsaI	GTAC	1 cut(s)	4
RsaNI	GTAC	1 cut(s)	3
Sau3AI	GATC	2 cut(s)	70, 112
Sau96I	GGNCC	2 cut(s)	121, 158
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	5 cut(s)	33, 82, 187, 246, 253
SfoI	GGCGCC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	2 cut(s)	263, 297
SsiI	CCGC	1 cut(s)	85
SspDI	GGCGCC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	228, 236
TaiI	ACGT	2 cut(s)	82, 253
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	263, 297
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	4 cut(s)	45, 212, 222, 236
Tsp45I	GTSAC	4 cut(s)	45, 212, 222, 236
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	121
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.