Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

3098659 .. 3100528

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCACCTCAGGCATTGTCTTTAGCTCCTCTAGCCCTCTCTCTTGTTCTCTTCAATCTTCATCTTCATGGTGCTTTTGCTGATTATGGTGGCTGGGAAGGCGCTCATGCCACTTTTTATGGTGGCGGTGATGCCTCAGGAACAATGGGGGGAGCATGTGGGTATGGGAACTTGTACAGCCAGGGGTATGGAACCAACACTGCAGCTTTAAGCACAGCCTTGTTTAACAATGGCTTGAGCTGTGGCTCTTGTTATGAAATGAGATGCAACAATGACCCTAGATGGTGTCGTCCTGGAAGCATCATTGTTACTGCTACAAACTTTTGCCCACCTAACTTTGCTCAGTCCAACGACAATGGCGGCTGGTGCAATCCTCCTCTCCAGCACTTTGATTTGGCTGAGCCTGCTTTCTTGCAAATTGCCCAATACCGCGCTGGGATTGTGCCTGTTACCTTCAGAAGAGTGCCCTGTATGAAGAAAGGAGGAATAAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACCAACGTTGGTGGTGCAGGTGACGTCCATTCAGTTTCAATCAAGGGGTCCAGAACAGGGTGGCAACCCATGTCAAGAAACTGGGGGCAAAACTGGCAGAGCAACACTTACCTGAATGGCCAGAGCCTCTCCTTCCAAGTGACCACCAGTGACGGAAGAACTGTCACAAGCTACAACGTGGCCCCTGGTAATTGGCAGTTTGGTCAGACTTTCTCAGGGGGTCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.27

Weight (kDa)

8.43

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
AatII	GACGTC	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	542
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	126, 360, 430
AclI	AACGTT	1 cut(s)	540
AcoI	YGGCCR	2 cut(s)	505, 652
AcuI	CTGAAG	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	55, 520, 573
AjnI	CCWGG	4 cut(s)	180, 292, 522, 718
AluBI	AGCT	4 cut(s)	26, 206, 240, 705
AluI	AGCT	4 cut(s)	26, 206, 240, 705
AoxI	GGCC	3 cut(s)	505, 652, 714
ApeKI	GCWGC	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	104, 434
AspS9I	GGNCC	2 cut(s)	582, 715
AsuHPI	GGTGA	4 cut(s)	140, 487, 526, 566
AvaII	GGWCC	1 cut(s)	582
AxyI	CCTNAGG	2 cut(s)	9, 136
BaeGI	GKGCMC	1 cut(s)	468
BalI	TGGCCA	2 cut(s)	507, 654
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	2 cut(s)	276, 506
BciT130I	CCWGG	4 cut(s)	182, 294, 524, 720
BclI	TGATCA	1 cut(s)	531
BfaI	CTAG	2 cut(s)	32, 279
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	542
BisI	GCNGC	2 cut(s)	204, 361
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	205, 362
Bme1390I	CCNGG	4 cut(s)	182, 294, 524, 720
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	582, 715
BmiI	GGNNCC	3 cut(s)	193, 583, 717
BmrFI	CCNGG	4 cut(s)	182, 294, 524, 720
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	3 cut(s)	121, 254, 309
BmuI	ACTGGG	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	181, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	3 cut(s)	620, 632, 681
Bse21I	CCTNAGG	2 cut(s)	9, 136
BseBI	CCWGG	4 cut(s)	182, 294, 524, 720
BseDI	CCNNGG	2 cut(s)	181, 718
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMII	CTCAG	5 cut(s)	23, 150, 356, 390, 762
BseNI	ACTGG	3 cut(s)	620, 632, 681
BseRI	GAGGAG	2 cut(s)	18, 366
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	2 cut(s)	93, 434
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	507, 654, 716
BslI	CCNNNNNNNGG	1 cut(s)	591
BsnI	GGCC	3 cut(s)	507, 654, 716
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	531
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	3 cut(s)	126, 360, 430
BspANI	GGCC	3 cut(s)	507, 654, 716
BspCNI	CTCAG	5 cut(s)	22, 149, 355, 391, 761
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	3 cut(s)	193, 583, 717
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	620, 632, 681
BssECI	CCNNGG	2 cut(s)	181, 718
BssMI	GATC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	558
Bst2UI	CCWGG	4 cut(s)	182, 294, 524, 720
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	2 cut(s)	56, 454
BstACI	GRCGYC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	9, 136, 342, 399, 748
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 434
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 99, 366, 404, 628
BstNI	CCWGG	4 cut(s)	182, 294, 524, 720
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	4 cut(s)	180, 292, 522, 718
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	188
Bsu36I	CCTNAGG	2 cut(s)	9, 136
BsuRI	GGCC	3 cut(s)	507, 654, 716
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 688
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	2 cut(s)	104, 434
Cfr13I	GGNCC	2 cut(s)	582, 715
CsiI	ACCWGGT	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	175
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	4 cut(s)	68, 107, 156, 604
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	5 cut(s)	9, 136, 342, 399, 748
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	2 cut(s)	505, 652
Eam1104I	CTCTTC	2 cut(s)	56, 454
EarI	CTCTTC	2 cut(s)	56, 454
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	439
Eco81I	CCTNAGG	2 cut(s)	9, 136
EcoRII	CCWGG	4 cut(s)	180, 292, 522, 718
FaeI	CATG	4 cut(s)	71, 110, 159, 607
FatI	CATG	4 cut(s)	67, 106, 155, 603
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	204, 361
Fsp4HI	GCNGC	2 cut(s)	204, 361
FspBI	CTAG	2 cut(s)	32, 279
GlaI	GCGC	2 cut(s)	103, 433
GluI	GCNGC	2 cut(s)	204, 361
GsaI	CCCAGC	2 cut(s)	97, 438
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	507, 654, 716
HhaI	GCGC	2 cut(s)	104, 434
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	4 cut(s)	71, 110, 159, 607
Hin6I	GCGC	2 cut(s)	102, 432
HinP1I	GCGC	2 cut(s)	102, 432
HinfI	GANTC	1 cut(s)	492
HphI	GGTGA	4 cut(s)	140, 487, 526, 566
Hpy188I	TCNGA	2 cut(s)	458, 741
Hpy188III	TCNNGA	3 cut(s)	138, 585, 609
HpyAV	CCTTC	3 cut(s)	92, 463, 676
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	3 cut(s)	540, 558, 711
HpyCH4V	TGCA	5 cut(s)	203, 267, 369, 415, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 99, 366, 404, 628
HpyF3I	CTNAG	5 cut(s)	9, 136, 342, 399, 748
HpySE526I	ACGT	3 cut(s)	540, 558, 711
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	4 cut(s)	71, 110, 159, 607
HspAI	GCGC	2 cut(s)	102, 432
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	31, 152
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	3 cut(s)	121, 254, 309
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	2 cut(s)	32, 279
MaeII	ACGT	3 cut(s)	540, 558, 711
MaeIII	GTNAC	7 cut(s)	3, 307, 448, 554, 673, 683, 697
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	6 cut(s)	43, 50, 56, 471, 487, 702
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	2 cut(s)	507, 654
MluCI	AATT	3 cut(s)	417, 724, 758
MluNI	TGGCCA	2 cut(s)	507, 654
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	18, 39, 47, 145, 384, 387, 476, 671
Mox20I	TGGCCA	2 cut(s)	507, 654
MscI	TGGCCA	2 cut(s)	507, 654
MseI	TTAA	2 cut(s)	209, 225
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	2 cut(s)	507, 654
MspR9I	CCNGG	4 cut(s)	182, 294, 524, 720
MvaI	CCWGG	4 cut(s)	182, 294, 524, 720
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	32, 99, 366, 404, 628
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	4 cut(s)	71, 110, 159, 607
NlaIV	GGNNCC	3 cut(s)	193, 583, 717
NmuCI	GTSAC	5 cut(s)	3, 554, 673, 683, 697
NspI	RCATGY	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	205, 362
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	4 cut(s)	180, 292, 522, 718
PspFI	CCCAGC	2 cut(s)	93, 434
PspGI	CCWGG	4 cut(s)	180, 292, 522, 718
PspN4I	GGNNCC	3 cut(s)	193, 583, 717
PspPI	GGNCC	2 cut(s)	582, 715
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	209, 225
SatI	GCNGC	2 cut(s)	204, 361
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	2 cut(s)	582, 715
ScrFI	CCNGG	4 cut(s)	182, 294, 524, 720
SduI	GDGCHC	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	3 cut(s)	121, 254, 309
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	417, 724, 758
SsiI	CCGC	3 cut(s)	126, 360, 430
SspMI	CTAG	2 cut(s)	32, 279
StyD4I	CCNGG	4 cut(s)	180, 292, 522, 718
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	3 cut(s)	543, 561, 714
TasI	AATT	3 cut(s)	417, 724, 758
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	209, 225
Tru9I	TTAA	2 cut(s)	209, 225
TscAI	CASTG	2 cut(s)	205, 688
TseFI	GTSAC	5 cut(s)	3, 554, 673, 683, 697
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	5 cut(s)	3, 554, 673, 683, 697
TspDTI	ATGAA	4 cut(s)	50, 56, 270, 488
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	205, 688
VpaK11BI	GGWCC	1 cut(s)	582
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	32, 279
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.