Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

27161572 .. 27167605

Gene Structure 6034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1166700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTTTACTTCTCACTCCACCTTTGCTCTTCTGTTCTTTGTCCTCAATCTATGTCTTCAAGGTACTTTTGGTGACTATGGAGGTGGATGGGAGGGTGGCCATGCCACATTTTATGGTGGTGGTGATGCCTCTGGCACAATGGGAGGTGCTTGTGGATATGGGAACTTGTACAGCCAAGGGTACGGAACCAACACTGCAGCACTGAGCACAGCTCTCTTCAACAATGGCTTGAGCTGCGGGTCTTGCTATGAGATGAAATGTGGCAGTGACCCCAAATGGTGCCTCCCCGGCAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTTGCGCAGGCCAACGACAATGGTGGCTGGTGCAACCCTCCTCTCCAGCACTTTGATTTGGCTGAGCCTGCTTTCTTGAAAATTGCCCAATACAGAGCTGGAATTGTCCCCGTCTCCTTCAGAAGGGTTTCGTGTGTGAAGAAGGGAGGAATAAGGTTCACAATCAACGGCCACTCTTACTTCAACTTGGTTTTGATCACCAACGTCGGAGGAGCAGGAGACGTCCACTCTGTGTCGATCAAGGGTTCCAAGACAGGGTGGCAAGCCATGTCAAGAAACTGGGGCCAGAACTGGCAGAGCAACTCTTACCTCAACGGCCAGAGCCTCTCCTTCCAGGTCACCACCAGCGACGGCAGAACTCTCACCGCCAACAATGTTGCGCCGGGAAACTGGCAGTTCGGACAAACATTTGAGGGCAGTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

26.94

Weight (kDa)

8.07

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	66 - 151	2.2e-22	Lytic transglycolase
Expansin_C	PF01357	162 - 239	4.8e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	558
Acc16I	TGCGCA	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	3 cut(s)	240, 309, 699
AcoI	YGGCCR	3 cut(s)	100, 502, 649
AcuI	CTGAAG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	3 cut(s)	67, 173, 185
AfiI	CCNNNNNNNGG	2 cut(s)	456, 588
AgsI	TTSAA	4 cut(s)	62, 223, 412, 517
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	3 cut(s)	215, 237, 431
AluI	AGCT	3 cut(s)	215, 237, 431
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	451, 546
AoxI	GGCC	5 cut(s)	100, 342, 502, 616, 649
ApeKI	GCWGC	3 cut(s)	200, 237, 294
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	2 cut(s)	340, 715
AspS9I	GGNCC	1 cut(s)	616
AsuC2I	CCSGG	2 cut(s)	291, 717
AsuHPI	GGTGA	6 cut(s)	86, 137, 298, 523, 664, 688
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	212, 224, 306
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	3 cut(s)	517, 664, 700
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	291, 717
BcoDI	GTCTC	2 cut(s)	451, 546
BfmI	CTRYAG	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	3 cut(s)	201, 238, 295
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	3 cut(s)	202, 239, 296
Bme1390I	CCNGG	3 cut(s)	291, 668, 717
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	4 cut(s)	190, 284, 580, 617
BmrFI	CCNGG	3 cut(s)	291, 668, 717
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	118, 306
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	2 cut(s)	291, 717
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	178, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 588
Bse1I	ACTGG	3 cut(s)	617, 629, 728
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	2 cut(s)	178, 289
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	456, 588
BseMII	CTCAG	2 cut(s)	197, 387
BseNI	ACTGG	3 cut(s)	617, 629, 728
BseRI	GAGGAG	2 cut(s)	363, 558
BseXI	GCAGC	3 cut(s)	212, 224, 306
BshFI	GGCC	5 cut(s)	102, 344, 504, 618, 651
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	291, 716
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	456, 588
BsmAI	GTCTC	2 cut(s)	451, 546
BsmBI	CGTCTC	2 cut(s)	451, 546
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	5 cut(s)	102, 344, 504, 618, 651
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	528, 570
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	240, 309, 699
BspANI	GGCC	5 cut(s)	102, 344, 504, 618, 651
BspCNI	CTCAG	2 cut(s)	198, 388
BspLI	GGNNCC	4 cut(s)	190, 284, 580, 617
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	617, 629, 728
BssECI	CCNNGG	2 cut(s)	178, 289
BssMI	GATC	2 cut(s)	528, 570
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	668
Bst6I	CTCTTC	2 cut(s)	36, 224
BstACI	GRCGYC	1 cut(s)	555
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	342, 402, 597
BstDEI	CTNAG	2 cut(s)	206, 396
BstEII	GGTNACC	1 cut(s)	670
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	340, 715
BstKTI	GATC	2 cut(s)	531, 573
BstMAI	GTCTC	2 cut(s)	451, 546
BstMBI	GATC	2 cut(s)	528, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 246, 291, 401
BstNI	CCWGG	1 cut(s)	668
BstPI	GGTNACC	1 cut(s)	670
BstSCI	CCNGG	3 cut(s)	289, 666, 715
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	212, 224, 306
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	5 cut(s)	102, 344, 504, 618, 651
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	2 cut(s)	195, 274
BtsIMutI	CAGTG	3 cut(s)	195, 203, 274
Cac8I	GCNNGC	3 cut(s)	342, 402, 597
CfoI	GCGC	2 cut(s)	340, 715
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	3 cut(s)	66, 172, 184
CviAII	CATG	2 cut(s)	104, 601
CviQI	GTAC	3 cut(s)	66, 172, 184
DdeI	CTNAG	2 cut(s)	206, 396
DpnI	GATC	2 cut(s)	530, 572
DpnII	GATC	2 cut(s)	528, 570
DraIII	CACNNNGTG	1 cut(s)	565
EaeI	YGGCCR	3 cut(s)	100, 502, 649
Eam1104I	CTCTTC	2 cut(s)	36, 224
EarI	CTCTTC	2 cut(s)	36, 224
Eco130I	CCWWGG	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	670
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	2 cut(s)	451, 546
FaeI	CATG	2 cut(s)	107, 604
FaiI	YATR	7 cut(s)	55, 81, 105, 117, 162, 252, 602
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	103, 600
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	201, 238, 295
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	201, 238, 295
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	2 cut(s)	339, 714
GluI	GCNGC	3 cut(s)	201, 238, 295
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	5 cut(s)	102, 344, 504, 618, 651
HapII	CCGG	2 cut(s)	291, 716
HhaI	GCGC	2 cut(s)	340, 715
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	107, 604
Hin6I	GCGC	2 cut(s)	338, 713
HinP1I	GCGC	2 cut(s)	338, 713
HpaII	CCGG	2 cut(s)	291, 716
HphI	GGTGA	6 cut(s)	86, 137, 298, 523, 664, 688
Hpy166II	GTNNAC	2 cut(s)	492, 559
Hpy188I	TCNGA	4 cut(s)	455, 542, 734, 761
Hpy188III	TCNNGA	2 cut(s)	409, 606
Hpy8I	GTNNAC	2 cut(s)	492, 559
Hpy99I	CGWCG	2 cut(s)	542, 686
HpyAV	CCTTC	4 cut(s)	450, 460, 469, 673
HpyCH4IV	ACGT	2 cut(s)	537, 555
HpyCH4V	TGCA	2 cut(s)	200, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 246, 291, 401
HpyF3I	CTNAG	2 cut(s)	206, 396
HpySE526I	ACGT	2 cut(s)	537, 555
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	107, 604
HspAI	GCGC	2 cut(s)	338, 713
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	528, 570
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	3 cut(s)	212, 224, 306
LweI	GCATC	2 cut(s)	118, 306
MaeII	ACGT	2 cut(s)	537, 555
MaeIII	GTNAC	4 cut(s)	74, 269, 304, 670
MalI	GATC	2 cut(s)	530, 572
MboI	GATC	2 cut(s)	528, 570
MboII	GAAGA	4 cut(s)	23, 50, 211, 484
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	414, 435, 755
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	520
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	291, 716
MspR9I	CCNGG	3 cut(s)	291, 668, 717
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	4 cut(s)	237, 246, 291, 401
NciI	CCSGG	2 cut(s)	291, 717
NdeII	GATC	2 cut(s)	528, 570
NlaIII	CATG	2 cut(s)	107, 604
NlaIV	GGNNCC	4 cut(s)	190, 284, 580, 617
NmuCI	GTSAC	4 cut(s)	74, 269, 304, 670
NsbI	TGCGCA	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	202, 239, 296
Psp6I	CCWGG	1 cut(s)	666
PspEI	GGTNACC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	4 cut(s)	190, 284, 580, 617
PspPI	GGNCC	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	67, 173, 185
RsaNI	GTAC	3 cut(s)	66, 172, 184
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	201, 238, 295
Sau3AI	GATC	2 cut(s)	528, 570
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	3 cut(s)	291, 668, 717
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	118, 306
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	414, 435, 755
SsiI	CCGC	3 cut(s)	240, 309, 699
StyD4I	CCNGG	3 cut(s)	289, 666, 715
StyI	CCWWGG	1 cut(s)	178
TaiI	ACGT	2 cut(s)	540, 558
TaqI	TCGA	1 cut(s)	569
TasI	AATT	3 cut(s)	414, 435, 755
TatI	WGTACW	1 cut(s)	171
TscAI	CASTG	3 cut(s)	202, 210, 274
TseFI	GTSAC	4 cut(s)	74, 269, 304, 670
TseI	GCWGC	3 cut(s)	200, 237, 294
Tsp45I	GTSAC	4 cut(s)	74, 269, 304, 670
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	202, 210, 274
XagI	CCTNNNNNAGG	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	460
ZraI	GACGTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.