Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

34066995 .. 34068577

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAGCTTCAGCATTGTCTCTAGCTCCTCTAGCTCTTCTCATTCTCCTCAACCTCCATTTTCACTCTACTTTCGCCGATTATGGTGGCTGGAACGGCGGTCATGCCACATTCTATGGCGGTGGGGATGCCTCAGGCACAATGGGAGGAGCATGTGGTTATGGGAACTTGTATAGCCAAGGGTATGGAACTAACACTGCAGCATTGAGCACAGCTTTGTTCAACGATGGCTTGAGCTGTGGCTCTTGCTATGAAATGAGGTGTGACAATGATCCTAGGTGGTGCCGCCCTGGAAGCATCATTGTCACTGCTACCAACTTCTGCCCTCCTAACTTCGCGCAGGCCAATGACAATGGTGGTTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCCGAGCCTGCTTTCTTGCAAATCGCACAATACCGTGCCGGAATTGTGCCAGTTGCCTTCAGAAGAGTACCATGTGTGAAGAAAGGAGGAATAAGGTTCACCATCAATGGACACTCCTACTTCAACCTAGTTCTGATCACCAATGTCGCCGGAGCAGGAGACGTTCATTCGGTTTCGATCAAGGGGTCCAGAACTGGTTGGCAATCCATGTCAAGAAACTGGGGCCAAAACTGGCAGAGTAACTCTTACCTCAACGGCCAAGCCCTCTCCTTCCAAGTCACCACCAGTGATGGTAGAACTGTGACAAGTTACAATGTTGCTCCAGGTAACTGGCAGTTTGGCCAGACTTACCAAGGGGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

27.1

Weight (kDa)

8.12

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 156	2.4e-07	EXPB1-like domain 1
DPBB_1	PF03330	66 - 150	7.2e-23	Lytic transglycolase
Expansin_C	PF01357	162 - 239	2.5e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccII	CGCG	1 cut(s)	338
AciI	CCGC	3 cut(s)	99, 120, 286
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	3 cut(s)	393, 649, 733
AcuI	CTGAAG	1 cut(s)	436
AfaI	GTAC	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	223, 517
AjnI	CCWGG	2 cut(s)	289, 715
AluBI	AGCT	5 cut(s)	8, 26, 35, 215, 237
AluI	AGCT	5 cut(s)	8, 26, 35, 215, 237
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	24, 546
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	5 cut(s)	342, 393, 616, 649, 733
ApeKI	GCWGC	2 cut(s)	5, 200
AspA2I	CCTAGG	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	579, 616
AsuHPI	GGTGA	3 cut(s)	484, 523, 664
AvaII	GGWCC	1 cut(s)	579
AvrII	CCTAGG	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	17, 212
BccI	CCATC	3 cut(s)	221, 503, 677
BceAI	ACGGC	2 cut(s)	112, 664
BciT130I	CCWGG	2 cut(s)	291, 717
BclI	TGATCA	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	24, 546
BfaI	CTAG	5 cut(s)	23, 32, 276, 521, 760
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	6, 201, 286
BlnI	CCTAGG	1 cut(s)	275
BlsI	GCNGC	3 cut(s)	7, 202, 287
Bme1390I	CCNGG	2 cut(s)	291, 717
Bme18I	GGWCC	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	579, 616
BmiI	GGNNCC	3 cut(s)	284, 580, 617
BmrFI	CCNGG	2 cut(s)	291, 717
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	118, 306
BmuI	ACTGGG	1 cut(s)	622
BpmI	CTGGAG	2 cut(s)	362, 699
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	4 cut(s)	178, 275, 289, 745
Bse1I	ACTGG	6 cut(s)	443, 592, 617, 629, 678, 728
Bse21I	CCTNAGG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	291, 717
BseDI	CCNNGG	4 cut(s)	178, 275, 289, 745
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	6 cut(s)	443, 592, 617, 629, 678, 728
BseRI	GAGGAG	3 cut(s)	18, 38, 162
BseXI	GCAGC	2 cut(s)	17, 212
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	5 cut(s)	344, 395, 618, 651, 735
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	432, 543
BsmAI	GTCTC	2 cut(s)	24, 546
BsmBI	CGTCTC	1 cut(s)	546
BsnI	GGCC	5 cut(s)	344, 395, 618, 651, 735
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	271, 528, 570
BspACI	CCGC	3 cut(s)	99, 120, 286
BspANI	GGCC	5 cut(s)	344, 395, 618, 651, 735
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	284, 580, 617
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	6 cut(s)	443, 592, 617, 629, 678, 728
BssECI	CCNNGG	4 cut(s)	178, 275, 289, 745
BssMI	GATC	3 cut(s)	271, 528, 570
BssT1I	CCWWGG	3 cut(s)	178, 275, 745
Bst2UI	CCWGG	2 cut(s)	291, 717
Bst4CI	ACNGT	2 cut(s)	428, 694
Bst6I	CTCTTC	2 cut(s)	42, 451
BstC8I	GCNNGC	2 cut(s)	342, 402
BstDEI	CTNAG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	3 cut(s)	274, 531, 573
BstMAI	GTCTC	2 cut(s)	24, 546
BstMBI	GATC	3 cut(s)	271, 528, 570
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 32, 96, 294, 401
BstNI	CCWGG	2 cut(s)	291, 717
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	289, 715
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	17, 212
BstXI	CCANNNNNNTGG	2 cut(s)	185, 723
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	344, 395, 618, 651, 735
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	2 cut(s)	195, 306
BtsIMutI	CAGTG	3 cut(s)	195, 306, 685
Cac8I	GCNNGC	2 cut(s)	342, 402
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	579, 616
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	4 cut(s)	104, 153, 465, 601
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	3 cut(s)	273, 530, 572
DpnII	GATC	3 cut(s)	271, 528, 570
EaeI	YGGCCR	3 cut(s)	393, 649, 733
Eam1104I	CTCTTC	2 cut(s)	42, 451
EarI	CTCTTC	2 cut(s)	42, 451
Eco130I	CCWWGG	3 cut(s)	178, 275, 745
Eco47I	GGWCC	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	289, 715
EcoT14I	CCWWGG	3 cut(s)	178, 275, 745
ErhI	CCWWGG	3 cut(s)	178, 275, 745
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	4 cut(s)	107, 156, 468, 604
FatI	CATG	4 cut(s)	103, 152, 464, 600
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	6, 201, 286
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	6, 201, 286
FspBI	CTAG	5 cut(s)	23, 32, 276, 521, 760
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	3 cut(s)	6, 201, 286
GsuI	CTGGAG	2 cut(s)	362, 699
HaeIII	GGCC	5 cut(s)	344, 395, 618, 651, 735
HapII	CCGG	2 cut(s)	432, 543
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	107, 156, 468, 604
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HpaII	CCGG	2 cut(s)	432, 543
HphI	GGTGA	3 cut(s)	484, 523, 664
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	455, 528
Hpy188III	TCNNGA	2 cut(s)	582, 606
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	460, 673
HpyCH4III	ACNGT	2 cut(s)	428, 694
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	200, 366, 412
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 32, 96, 294, 401
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	4 cut(s)	107, 156, 468, 604
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	271, 528, 570
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	4 cut(s)	31, 149, 545, 718
Lsp1109I	GCAGC	2 cut(s)	17, 212
LweI	GCATC	2 cut(s)	118, 306
MaeI	CTAG	5 cut(s)	23, 32, 276, 521, 760
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	7 cut(s)	263, 304, 632, 670, 694, 701, 719
MalI	GATC	3 cut(s)	273, 530, 572
MboI	GATC	3 cut(s)	271, 528, 570
MboII	GAAGA	3 cut(s)	29, 468, 484
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	2 cut(s)	435, 755
MluNI	TGGCCA	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	2 cut(s)	432, 543
MspR9I	CCNGG	2 cut(s)	291, 717
MvaI	CCWGG	2 cut(s)	291, 717
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	5 cut(s)	11, 32, 96, 294, 401
NdeII	GATC	3 cut(s)	271, 528, 570
NlaIII	CATG	4 cut(s)	107, 156, 468, 604
NlaIV	GGNNCC	3 cut(s)	284, 580, 617
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	4 cut(s)	263, 304, 670, 694
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	7, 202, 287
Psp6I	CCWGG	2 cut(s)	289, 715
PspGI	CCWGG	2 cut(s)	289, 715
PspN4I	GGNNCC	3 cut(s)	284, 580, 617
PspPI	GGNCC	2 cut(s)	579, 616
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	3 cut(s)	6, 201, 286
Sau3AI	GATC	3 cut(s)	271, 528, 570
Sau96I	GGNCC	2 cut(s)	579, 616
ScrFI	CCNGG	2 cut(s)	291, 717
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	118, 306
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	435, 755
SsiI	CCGC	3 cut(s)	99, 120, 286
SspMI	CTAG	5 cut(s)	23, 32, 276, 521, 760
StyD4I	CCNGG	2 cut(s)	289, 715
StyI	CCWWGG	3 cut(s)	178, 275, 745
TaaI	ACNGT	2 cut(s)	428, 694
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	387, 569
TasI	AATT	2 cut(s)	435, 755
TauI	GCSGC	1 cut(s)	288
TscAI	CASTG	3 cut(s)	202, 313, 685
TseFI	GTSAC	4 cut(s)	263, 304, 670, 694
TseI	GCWGC	2 cut(s)	5, 200
Tsp45I	GTSAC	4 cut(s)	263, 304, 670, 694
TspDTI	ATGAA	2 cut(s)	267, 548
TspRI	CASTG	3 cut(s)	202, 313, 685
VpaK11BI	GGWCC	1 cut(s)	579
XceI	RCATGY	1 cut(s)	156
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	5 cut(s)	23, 32, 276, 521, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.