Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Reverse (-)

16948791 .. 16950705

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTACACTCCATCATACTTAAAATATTCAATAATCTCAATTATATCCGTATTATTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCCACGTTTTACGGCGGCGAAGATGCTTCCGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTATGGCCAAGGTTACGGGACGAACACGGCGGCTTTAAGTACGGCTCTATTCAACAACGGACTCACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTCAACCATCACCGTCACAGCTACAAACTTTTGCCCACCTAACCCTGGCCTCTCCAACGATAATGGAGGTTGGTGCAATCCTCCTCTTCAGCATTTCGACCTCGCCGAGCCAGCTTTTCTTCAGATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAAGAAAGGAGGAATAAGGTTTACGATCAACGGACACTCATACTTCAACCTCGTTCTGATCTCCAACGTAGGAGGAGCAGGAGACGTACACGCCGTCTCAATCAAAGGCTCAAAAACACAGTCGTGGCAAGCGATGTCTAGAAACTGGGGACAAAACTGGCAGAGCAATTCATACATGAACGACCAAAGCCTTTCCTTCCAGGTAACGACCAGCGATGGTCGCACACTCGTTAGCAACGACGTGGCTCCTTCTAATTGGCAGTTCGGACAAACCTACCAAGGTGGTCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.26

Weight (kDa)

6.48

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	65 - 150	1.1e-21	Lytic transglycolase
Expansin_C	PF01357	161 - 239	5.2e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	242
AciI	CCGC	3 cut(s)	117, 144, 197
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	2 cut(s)	359, 392
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	5, 208, 459, 555
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	30, 220, 514
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	331, 666
AleI	CACNNNNGTG	1 cut(s)	589
AluBI	AGCT	3 cut(s)	149, 308, 401
AluI	AGCT	3 cut(s)	149, 308, 401
Alw26I	GTCTC	5 cut(s)	69, 287, 448, 543, 568
Ama87I	CYCGRG	2 cut(s)	271, 284
AoxI	GGCC	2 cut(s)	172, 334
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	2 cut(s)	271, 284
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	234
BccI	CCATC	3 cut(s)	19, 302, 677
BceAI	ACGGC	4 cut(s)	130, 210, 225, 545
BciT130I	CCWGG	2 cut(s)	333, 668
BcoDI	GTCTC	5 cut(s)	69, 287, 448, 543, 568
BfaI	CTAG	1 cut(s)	606
BisI	GCNGC	2 cut(s)	118, 198
BlsI	GCNGC	2 cut(s)	119, 199
Bme1390I	CCNGG	2 cut(s)	333, 668
BmeT110I	CYCGRG	2 cut(s)	271, 284
BmgBI	CACGTC	1 cut(s)	709
BmiI	GGNNCC	2 cut(s)	136, 714
BmrFI	CCNGG	2 cut(s)	333, 668
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	234
BsaJI	CCNNGG	6 cut(s)	61, 138, 175, 272, 331, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	617, 629
BseBI	CCWGG	2 cut(s)	333, 668
BseDI	CCNNGG	6 cut(s)	61, 138, 175, 272, 331, 745
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	617, 629
BseRI	GAGGAG	2 cut(s)	360, 555
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	174, 336
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	271, 284
BsiSI	CCGG	2 cut(s)	132, 429
BslFI	GGGAC	2 cut(s)	199, 630
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	5 cut(s)	69, 287, 448, 543, 568
BsmBI	CGTCTC	3 cut(s)	69, 543, 568
BsmFI	GGGAC	2 cut(s)	199, 630
BsnI	GGCC	2 cut(s)	174, 336
BsoBI	CYCGRG	2 cut(s)	271, 284
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	411, 492, 525
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	3 cut(s)	117, 144, 197
BspANI	GGCC	2 cut(s)	174, 336
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	136, 714
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	617, 629
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	6 cut(s)	61, 138, 175, 272, 331, 745
BssMI	GATC	3 cut(s)	411, 492, 525
BssT1I	CCWWGG	4 cut(s)	61, 138, 175, 745
Bst2UI	CCWGG	2 cut(s)	333, 668
Bst4CI	ACNGT	2 cut(s)	301, 588
Bst6I	CTCTTC	2 cut(s)	378, 448
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	244, 399, 430, 597
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	3 cut(s)	414, 495, 528
BstMAI	GTCTC	5 cut(s)	69, 287, 448, 543, 568
BstMBI	GATC	3 cut(s)	411, 492, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 398, 687
BstNI	CCWGG	2 cut(s)	333, 668
BstSCI	CCNGG	2 cut(s)	331, 666
BstUI	CGCG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	174, 336
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	2 cut(s)	614, 696
BtrI	CACGTC	1 cut(s)	709
Cac8I	GCNNGC	4 cut(s)	244, 399, 430, 597
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	428
Csp6I	GTAC	4 cut(s)	4, 207, 458, 554
CviAII	CATG	4 cut(s)	71, 139, 462, 643
CviQI	GTAC	4 cut(s)	4, 207, 458, 554
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	413, 494, 527
DpnII	GATC	3 cut(s)	411, 492, 525
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	378, 448
EarI	CTCTTC	2 cut(s)	378, 448
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	4 cut(s)	61, 138, 175, 745
Eco57I	CTGAAG	2 cut(s)	359, 392
Eco72I	CACGTG	1 cut(s)	234
Eco88I	CYCGRG	2 cut(s)	271, 284
EcoRII	CCWGG	2 cut(s)	331, 666
EcoT14I	CCWWGG	4 cut(s)	61, 138, 175, 745
ErhI	CCWWGG	4 cut(s)	61, 138, 175, 745
Esp3I	CGTCTC	3 cut(s)	69, 543, 568
FaeI	CATG	4 cut(s)	74, 142, 465, 646
FaqI	GGGAC	2 cut(s)	199, 630
FatI	CATG	4 cut(s)	70, 138, 461, 642
Fnu4HI	GCNGC	2 cut(s)	118, 198
Fsp4HI	GCNGC	2 cut(s)	118, 198
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	118, 198
HaeIII	GGCC	2 cut(s)	174, 336
HapII	CCGG	2 cut(s)	132, 429
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	74, 142, 465, 646
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	132, 429
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	4 cut(s)	6, 291, 489, 556
Hpy188I	TCNGA	5 cut(s)	411, 452, 525, 734, 761
Hpy188III	TCNNGA	1 cut(s)	606
Hpy8I	GTNNAC	4 cut(s)	6, 291, 489, 556
Hpy99I	CGWCG	2 cut(s)	83, 710
HpyAV	CCTTC	2 cut(s)	673, 726
HpyCH4III	ACNGT	2 cut(s)	301, 588
HpyCH4IV	ACGT	5 cut(s)	107, 233, 534, 552, 708
HpyCH4V	TGCA	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 398, 687
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	5 cut(s)	107, 233, 534, 552, 708
Hsp92II	CATG	4 cut(s)	74, 142, 465, 646
HspAI	GCGC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	411, 492, 525
LmnI	GCTCC	3 cut(s)	146, 542, 718
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	5 cut(s)	107, 233, 534, 552, 708
MaeIII	GTNAC	5 cut(s)	98, 179, 260, 301, 670
MalI	GATC	3 cut(s)	413, 494, 527
MboI	GATC	3 cut(s)	411, 492, 525
MboII	GAAGA	5 cut(s)	134, 365, 398, 465, 481
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	4 cut(s)	39, 163, 634, 721
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	366, 555
Mox20I	TGGCCA	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	20, 203
MslI	CAYNNNNRTG	1 cut(s)	589
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	2 cut(s)	132, 429
MspR9I	CCNGG	2 cut(s)	333, 668
MvaI	CCWGG	2 cut(s)	333, 668
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	141, 398, 687
NaeI	GCCGGC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	411, 492, 525
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	74, 142, 465, 646
NlaIV	GGNNCC	2 cut(s)	136, 714
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	98, 301
OliI	CACNNNNGTG	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	5 cut(s)	239, 390, 558, 596, 702
PdiI	GCCGGC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	119, 199
PleI	GAGTC	1 cut(s)	222
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	331, 666
PspCI	CACGTG	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	331, 666
PspN4I	GGNNCC	2 cut(s)	136, 714
RsaI	GTAC	4 cut(s)	5, 208, 459, 555
RsaNI	GTAC	4 cut(s)	4, 207, 458, 554
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	20, 203
SatI	GCNGC	2 cut(s)	118, 198
Sau3AI	GATC	3 cut(s)	411, 492, 525
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	333, 668
SfaNI	GCATC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	589
Sse9I	AATT	4 cut(s)	39, 163, 634, 721
SsiI	CCGC	3 cut(s)	117, 144, 197
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	331, 666
StyI	CCWWGG	4 cut(s)	61, 138, 175, 745
TaaI	ACNGT	2 cut(s)	301, 588
TaiI	ACGT	5 cut(s)	110, 236, 537, 555, 711
TaqI	TCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	39, 163, 634, 721
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	120, 200
Tru1I	TTAA	2 cut(s)	20, 203
Tru9I	TTAA	2 cut(s)	20, 203
TseFI	GTSAC	2 cut(s)	98, 301
Tsp45I	GTSAC	2 cut(s)	98, 301
TspDTI	ATGAA	4 cut(s)	269, 482, 627, 659
TspGWI	ACGGA	4 cut(s)	37, 96, 240, 513
XapI	RAATTY	1 cut(s)	163
XbaI	TCTAGA	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.