Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

4180760 .. 4182503

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1052400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCAGTTCATGCATTGTCTTTGGCTCCTATAGCCCTCTCTGTTGTTCTCTTTAATCTACATCTGCATGGTGCATTTGCTGTTTATGGTAGCTGGGAAGGCGCTCATGCCACATTTTATGGTGGCGGTGATGCCTCCGGCACAATGGGAGGAGCATGTGGTTATGGGAATTTGTACAGCCAGGGGTATGGAACCAACACTGCAGCTTTGAGCACAGCATTGTTCAACAATGGCTTGAGCTGTGGGTCTTGTTATGAAATGAGATGCGACAATGACCCGAGATGGTGCCGTCCTGGATCCATCATTGTTACTGCTACAAACTTTTGCCCTCCTAACTTTGCTCAGTCCAACGACAATGGCGGATGGTGCAATCCTCCTCTCCAACACTTCGATTTGGCTGAGCCTGCTTTCTTGCAAATTGCCCAATACCGCGCCGGAATAGTGCCGGTTTCCTTCAGAAGAGTACCTTGTGTGAAGAAAGGAGGAATAAGATTCACCATCAACGGCCACTCCTACTTCAACCTGGTTTTGATCACCAACGTGGCTGGGGCAGGAGACGTCCATTCAGTTTCAATCAAGGGGTCCAGAACAGGGTGGCAACCCATGTCAAGAAACTGGGGTCAAAACTGGCAGAGCAACTCTTACCTCAATGGCCAAGCCCTCTCCTTCCAAGTCACCACCAGTGACGGTAGAACCGTCACGAGCTACAACGTAGCGCCTGGTAATTGGCAGTTTGGTCAGACATTCTCCGGGGGTCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.2

Weight (kDa)

8.44

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 158	6.2e-08	EXPB1-like domain 1
DPBB_1	PF03330	67 - 152	4.2e-23	Lytic transglycolase
Expansin_C	PF01357	163 - 240	9.1e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	285
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	126, 360, 430
AclWI	GGATC	2 cut(s)	291, 304
AcoI	YGGCCR	2 cut(s)	505, 652
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	2 cut(s)	176, 465
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	226, 520, 573
AjnI	CCWGG	4 cut(s)	180, 292, 522, 718
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	93, 206, 240, 705
AluI	AGCT	4 cut(s)	93, 206, 240, 705
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	291, 304
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	505, 652
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	3 cut(s)	104, 434, 718
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	4 cut(s)	140, 487, 526, 667
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	4 cut(s)	276, 308, 357, 506
BceAI	ACGGC	2 cut(s)	273, 520
BciT130I	CCWGG	4 cut(s)	182, 294, 524, 720
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	30, 201
BfoI	RGCGCY	2 cut(s)	105, 719
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	5 cut(s)	182, 294, 524, 720, 751
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	5 cut(s)	27, 193, 287, 298, 583
BmrFI	CCNGG	5 cut(s)	182, 294, 524, 720, 751
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	121, 254
BmuI	ACTGGG	1 cut(s)	625
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	181, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	620, 632, 681
BseBI	CCWGG	4 cut(s)	182, 294, 524, 720
BseDI	CCNNGG	2 cut(s)	181, 750
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	356, 390
BseNI	ACTGG	3 cut(s)	620, 632, 681
BseRI	GAGGAG	2 cut(s)	165, 366
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	2 cut(s)	93, 545
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	507, 654
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	4 cut(s)	138, 435, 446, 750
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	507, 654
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	296, 531
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	3 cut(s)	126, 360, 430
BspANI	GGCC	2 cut(s)	507, 654
BspCNI	CTCAG	2 cut(s)	355, 391
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	5 cut(s)	27, 193, 287, 298, 583
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	291, 304
BspT107I	GGYRCC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	620, 632, 681
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	181, 750
BssMI	GATC	2 cut(s)	296, 531
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	4 cut(s)	182, 294, 524, 720
Bst4CI	ACNGT	2 cut(s)	689, 697
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	342, 399
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	2 cut(s)	105, 719
BstHHI	GCGC	3 cut(s)	104, 434, 718
BstKTI	GATC	2 cut(s)	299, 534
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	296, 531
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 32, 99, 366, 404
BstNI	CCWGG	4 cut(s)	182, 294, 524, 720
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	5 cut(s)	180, 292, 522, 718, 749
BstSFI	CTRYAG	2 cut(s)	30, 201
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	507, 654
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 688
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	3 cut(s)	104, 434, 718
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	582
CsiI	ACCWGGT	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	175, 464
CviAII	CATG	5 cut(s)	11, 68, 107, 156, 604
CviQI	GTAC	2 cut(s)	175, 464
DdeI	CTNAG	2 cut(s)	342, 399
DpnI	GATC	2 cut(s)	298, 533
DpnII	GATC	2 cut(s)	296, 531
EaeI	YGGCCR	2 cut(s)	505, 652
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	277
EcoRII	CCWGG	4 cut(s)	180, 292, 522, 718
EcoT22I	ATGCAT	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	5 cut(s)	14, 71, 110, 159, 607
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FatI	CATG	5 cut(s)	10, 67, 106, 155, 603
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	204
GlaI	GCGC	3 cut(s)	103, 433, 717
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	2 cut(s)	97, 549
HaeII	RGCGCY	2 cut(s)	105, 719
HaeIII	GGCC	2 cut(s)	507, 654
HapII	CCGG	4 cut(s)	138, 435, 446, 750
HhaI	GCGC	3 cut(s)	104, 434, 718
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	5 cut(s)	14, 71, 110, 159, 607
Hin6I	GCGC	3 cut(s)	102, 432, 716
HinP1I	GCGC	3 cut(s)	102, 432, 716
HinfI	GANTC	1 cut(s)	492
HpaII	CCGG	4 cut(s)	138, 435, 446, 750
HphI	GGTGA	4 cut(s)	140, 487, 526, 667
Hpy188I	TCNGA	2 cut(s)	458, 741
Hpy188III	TCNNGA	3 cut(s)	585, 609, 700
HpyAV	CCTTC	3 cut(s)	92, 463, 676
HpyCH4III	ACNGT	2 cut(s)	689, 697
HpyCH4IV	ACGT	3 cut(s)	540, 558, 711
HpyCH4V	TGCA	6 cut(s)	14, 67, 74, 203, 369, 415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 32, 99, 366, 404
HpyF3I	CTNAG	2 cut(s)	342, 399
HpySE526I	ACGT	3 cut(s)	540, 558, 711
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	14, 71, 110, 159, 607
HspAI	GCGC	3 cut(s)	102, 432, 716
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	296, 531
LmnI	GCTCC	2 cut(s)	31, 152
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	2 cut(s)	121, 254
MabI	ACCWGGT	1 cut(s)	522
MaeII	ACGT	3 cut(s)	540, 558, 711
MaeIII	GTNAC	4 cut(s)	307, 673, 683, 697
MalI	GATC	2 cut(s)	298, 533
MboI	GATC	2 cut(s)	296, 531
MboII	GAAGA	2 cut(s)	471, 487
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	4 cut(s)	169, 417, 724, 758
MluNI	TGGCCA	1 cut(s)	654
MmeI	TCCRAC	2 cut(s)	372, 406
MnlI	CCTC	9 cut(s)	47, 143, 145, 339, 384, 387, 476, 656, 671
Mox20I	TGGCCA	1 cut(s)	654
Mph1103I	ATGCAT	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	2 cut(s)	66, 539
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	4 cut(s)	138, 435, 446, 750
MspR9I	CCNGG	5 cut(s)	182, 294, 524, 720, 751
MvaI	CCWGG	4 cut(s)	182, 294, 524, 720
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	11, 32, 99, 366, 404
NciI	CCSGG	1 cut(s)	751
NdeII	GATC	2 cut(s)	296, 531
NlaIII	CATG	5 cut(s)	14, 71, 110, 159, 607
NlaIV	GGNNCC	5 cut(s)	27, 193, 287, 298, 583
NmuCI	GTSAC	3 cut(s)	673, 683, 697
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	4 cut(s)	180, 292, 522, 718
PspFI	CCCAGC	2 cut(s)	93, 545
PspGI	CCWGG	4 cut(s)	180, 292, 522, 718
PspN4I	GGNNCC	5 cut(s)	27, 193, 287, 298, 583
PspPI	GGNCC	1 cut(s)	582
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	2 cut(s)	176, 465
RsaNI	GTAC	2 cut(s)	175, 464
RseI	CAYNNNNRTG	2 cut(s)	66, 539
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	296, 531
Sau96I	GGNCC	1 cut(s)	582
ScrFI	CCNGG	5 cut(s)	182, 294, 524, 720, 751
SduI	GDGCHC	1 cut(s)	215
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	121, 254
SfcI	CTRYAG	2 cut(s)	30, 201
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	66, 539
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	169, 417, 724, 758
SsiI	CCGC	3 cut(s)	126, 360, 430
StyD4I	CCNGG	5 cut(s)	180, 292, 522, 718, 749
TaaI	ACNGT	2 cut(s)	689, 697
TaiI	ACGT	3 cut(s)	543, 561, 714
TaqI	TCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	169, 417, 724, 758
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	205, 688
TseFI	GTSAC	3 cut(s)	673, 683, 697
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	3 cut(s)	673, 683, 697
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	205, 688
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.