Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

3268231 .. 3269778

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCAAACAAACTCACTCACAATCCTCCCAAGTTTCCTTATAAATATAGGAACCCTCGTGCACTGTAAAGCACAGAGCAAACTCCACCTGCCCTACACAAAAACTAAAACTCCTCTCTTTCTTTTCCCTATTGAAATCAAAACCCACCAAAAAGCCACAAAAATGGCAGCTCATGCATTGTCTTTTGCTCCTATAGCCCTCTCTGTTGTTCTCTTTAATCTACATCTGCATGGTGTATTTGCTGTTTATGGTAGCTGGGAAGGCGCTCATGCCACATTTTACGGTGGCGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGTTATGGGAATTTGTACAGCCAGGGGTATGGAACCAACACTGCAGCTTTGAGCACAGCATTGTTCAACAATGGCTTAAGCTGTGGGTCTTGTTATGAAATGAGATGCGACAATGACCCGAGATGGTGCCGTCCTGGATCCATCATTGTAACTGCTACAAACTTTTGCCCTCCTAACTTTGCTCAGTCCAACGACAATGGCGGATGGTGCAATCCTCCTCTCCAGCATTTCGATTTGGCTGAGCCTGCTTTCTTGCAAATTGCCCAATACCGTGCTGGAATCGTGCCGGTTTCCTTCAGAAGAGTACCTTGTGTGAAGAAAGGAGGAATAAGATTCACCATCAACGGCCACTCCTACTTCAACCTGGTTTTGATCACCAACGTGGCTGGGGCAGGAGACGTCCATTCAGTTTCAATCAAGGGGTCCAGAACAGGGTGGCAACCCATGTCAAGAAACTGGGGTCAAAACTGGCAGAGCAACTCTTACCTCAATGGCCAAGCCCTCTCCTTCCAAGTCACCACCAGTGACGGTAGAACCGTCACGAGCTACAACGTCGCGCCTGGTAATTGGCAGTTTGGTCAGACATTCTCCGGGGGTCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

309

Amino Acids

33.35

Weight (kDa)

9.16

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AarI	CACCTGC	1 cut(s)	96
AatII	GACGTC	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	447
AccII	CGCG	1 cut(s)	878
AciI	CCGC	2 cut(s)	288, 522
AclWI	GGATC	2 cut(s)	453, 466
AcoI	YGGCCR	2 cut(s)	667, 814
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	720
AfaI	GTAC	2 cut(s)	338, 627
AfiI	CCNNNNNNNGG	1 cut(s)	753
AflII	CTTAAG	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	134, 388, 682, 735
AjnI	CCWGG	4 cut(s)	342, 454, 684, 880
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	5 cut(s)	170, 255, 368, 402, 867
AluI	AGCT	5 cut(s)	170, 255, 368, 402, 867
Alw21I	GWGCWC	2 cut(s)	63, 377
Alw26I	GTCTC	1 cut(s)	711
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	453, 466
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	2 cut(s)	667, 814
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	167, 365
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	266, 880
AspS9I	GGNCC	1 cut(s)	744
AsuC2I	CCSGG	1 cut(s)	913
AsuHPI	GGTGA	4 cut(s)	302, 649, 688, 829
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	816
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	447
BauI	CACGAG	2 cut(s)	56, 862
Bbv12I	GWGCWC	2 cut(s)	63, 377
BbvI	GCAGC	2 cut(s)	179, 377
BccI	CCATC	4 cut(s)	438, 470, 519, 668
BceAI	ACGGC	2 cut(s)	435, 682
BciT130I	CCWGG	4 cut(s)	344, 456, 686, 882
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	913
BcoDI	GTCTC	1 cut(s)	711
BfmI	CTRYAG	2 cut(s)	192, 363
BfoI	RGCGCY	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	168, 366
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	2 cut(s)	169, 367
Bme1390I	CCNGG	5 cut(s)	344, 456, 686, 882, 913
Bme18I	GGWCC	1 cut(s)	744
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	5 cut(s)	52, 355, 449, 460, 745
BmrFI	CCNGG	5 cut(s)	344, 456, 686, 882, 913
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	2 cut(s)	283, 416
BmuI	ACTGGG	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	913
BsaHI	GRCGYC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	343, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 656, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	782, 794, 843
BseBI	CCWGG	4 cut(s)	344, 456, 686, 882
BseDI	CCNNGG	2 cut(s)	343, 912
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	518, 552
BseNI	ACTGG	3 cut(s)	782, 794, 843
BseRI	GAGGAG	3 cut(s)	102, 327, 528
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	179, 377
BseYI	CCCAGC	2 cut(s)	255, 707
Bsh1236I	CGCG	1 cut(s)	878
BshFI	GGCC	2 cut(s)	669, 816
BshNI	GGYRCC	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	63, 377
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	2 cut(s)	608, 912
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	1 cut(s)	711
BsmBI	CGTCTC	1 cut(s)	711
BsnI	GGCC	2 cut(s)	669, 816
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	63, 377
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	458, 693
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	288, 522
BspANI	GGCC	2 cut(s)	669, 816
BspCNI	CTCAG	2 cut(s)	517, 553
BspFNI	CGCG	1 cut(s)	878
BspLI	GGNNCC	5 cut(s)	52, 355, 449, 460, 745
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	453, 466
BspT107I	GGYRCC	1 cut(s)	447
BspTI	CTTAAG	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	782, 794, 843
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	343, 912
BssMI	GATC	2 cut(s)	458, 693
BssNI	GRCGYC	1 cut(s)	720
BssSI	CACGAG	2 cut(s)	56, 862
Bst2BI	CACGAG	2 cut(s)	56, 862
Bst2UI	CCWGG	4 cut(s)	344, 456, 686, 882
Bst4CI	ACNGT	5 cut(s)	65, 284, 593, 851, 859
Bst6I	CTCTTC	1 cut(s)	616
BstACI	GRCGYC	1 cut(s)	720
BstAFI	CTTAAG	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	504, 561
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	1 cut(s)	878
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 880
BstKTI	GATC	2 cut(s)	461, 696
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	2 cut(s)	458, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 194, 261, 528, 566
BstNI	CCWGG	4 cut(s)	344, 456, 686, 882
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	5 cut(s)	342, 454, 684, 880, 911
BstSFI	CTRYAG	2 cut(s)	192, 363
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	2 cut(s)	179, 377
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	2 cut(s)	163, 350
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	669, 816
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	61, 360, 850
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	266, 880
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	744
CsiI	ACCWGGT	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	337, 626
CviAII	CATG	5 cut(s)	173, 230, 269, 318, 766
CviQI	GTAC	2 cut(s)	337, 626
DdeI	CTNAG	2 cut(s)	504, 561
DpnI	GATC	2 cut(s)	460, 695
DpnII	GATC	2 cut(s)	458, 693
EaeI	YGGCCR	2 cut(s)	667, 814
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	439
EcoRII	CCWGG	4 cut(s)	342, 454, 684, 880
EcoT22I	ATGCAT	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	711
FaeI	CATG	5 cut(s)	176, 233, 272, 321, 769
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FatI	CATG	5 cut(s)	172, 229, 268, 317, 765
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	2 cut(s)	168, 366
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	168, 366
GlaI	GCGC	2 cut(s)	265, 879
GluI	GCNGC	2 cut(s)	168, 366
GsaI	CCCAGC	2 cut(s)	259, 711
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	669, 816
HapII	CCGG	2 cut(s)	608, 912
HhaI	GCGC	2 cut(s)	266, 880
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	5 cut(s)	176, 233, 272, 321, 769
Hin6I	GCGC	2 cut(s)	264, 878
HinP1I	GCGC	2 cut(s)	264, 878
HinfI	GANTC	2 cut(s)	600, 654
HpaII	CCGG	2 cut(s)	608, 912
HphI	GGTGA	4 cut(s)	302, 649, 688, 829
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	620, 903
Hpy188III	TCNNGA	3 cut(s)	747, 771, 862
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	3 cut(s)	254, 625, 838
HpyCH4III	ACNGT	5 cut(s)	65, 284, 593, 851, 859
HpyCH4IV	ACGT	3 cut(s)	702, 720, 873
HpyCH4V	TGCA	7 cut(s)	4, 61, 176, 229, 365, 531, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 194, 261, 528, 566
HpyF3I	CTNAG	2 cut(s)	504, 561
HpySE526I	ACGT	3 cut(s)	702, 720, 873
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	5 cut(s)	176, 233, 272, 321, 769
HspAI	GCGC	2 cut(s)	264, 878
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	458, 693
LmnI	GCTCC	2 cut(s)	193, 314
Lsp1109I	GCAGC	2 cut(s)	179, 377
LweI	GCATC	2 cut(s)	283, 416
MabI	ACCWGGT	1 cut(s)	684
MaeII	ACGT	3 cut(s)	702, 720, 873
MaeIII	GTNAC	4 cut(s)	469, 835, 845, 859
MalI	GATC	2 cut(s)	460, 695
MboI	GATC	2 cut(s)	458, 693
MboII	GAAGA	2 cut(s)	633, 649
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	63, 377
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	4 cut(s)	331, 579, 886, 920
MluNI	TGGCCA	1 cut(s)	816
MmeI	TCCRAC	1 cut(s)	534
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	2 cut(s)	216, 398
MslI	CAYNNNNRTG	3 cut(s)	161, 228, 701
Msp20I	TGGCCA	1 cut(s)	816
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	608, 912
MspR9I	CCNGG	5 cut(s)	344, 456, 686, 882, 913
MvaI	CCWGG	4 cut(s)	344, 456, 686, 882
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	5 cut(s)	173, 194, 261, 528, 566
NciI	CCSGG	1 cut(s)	913
NdeII	GATC	2 cut(s)	458, 693
NlaIII	CATG	5 cut(s)	176, 233, 272, 321, 769
NlaIV	GGNNCC	5 cut(s)	52, 355, 449, 460, 745
NmuCI	GTSAC	3 cut(s)	835, 845, 859
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	321
OliI	CACNNNNGTG	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	600, 654
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	169, 367
PsiI	TTATAA	1 cut(s)	41
Psp6I	CCWGG	4 cut(s)	342, 454, 684, 880
PspFI	CCCAGC	2 cut(s)	255, 707
PspGI	CCWGG	4 cut(s)	342, 454, 684, 880
PspN4I	GGNNCC	5 cut(s)	52, 355, 449, 460, 745
PspPI	GGNCC	1 cut(s)	744
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	2 cut(s)	338, 627
RsaNI	GTAC	2 cut(s)	337, 626
RseI	CAYNNNNRTG	3 cut(s)	161, 228, 701
SaqAI	TTAA	2 cut(s)	216, 398
SatI	GCNGC	2 cut(s)	168, 366
Sau3AI	GATC	2 cut(s)	458, 693
Sau96I	GGNCC	1 cut(s)	744
ScrFI	CCNGG	5 cut(s)	344, 456, 686, 882, 913
SduI	GDGCHC	2 cut(s)	63, 377
SexAI	ACCWGGT	1 cut(s)	684
SfaNI	GCATC	2 cut(s)	283, 416
SfcI	CTRYAG	2 cut(s)	192, 363
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	3 cut(s)	161, 228, 701
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	4 cut(s)	331, 579, 886, 920
SsiI	CCGC	2 cut(s)	288, 522
StyD4I	CCNGG	5 cut(s)	342, 454, 684, 880, 911
TaaI	ACNGT	5 cut(s)	65, 284, 593, 851, 859
TaiI	ACGT	3 cut(s)	705, 723, 876
TaqI	TCGA	1 cut(s)	552
TasI	AATT	4 cut(s)	331, 579, 886, 920
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	600, 654
Tru1I	TTAA	2 cut(s)	216, 398
Tru9I	TTAA	2 cut(s)	216, 398
TscAI	CASTG	3 cut(s)	68, 367, 850
TseFI	GTSAC	3 cut(s)	835, 845, 859
TseI	GCWGC	2 cut(s)	167, 365
Tsp45I	GTSAC	3 cut(s)	835, 845, 859
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	3 cut(s)	68, 367, 850
Vha464I	CTTAAG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.