RchiOBHm_Chr1g0372131

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003292
Physical Location & Seq
Reverse (-)
60961785 .. 60963291
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59614

Sequence Viewer

Length: 762 bp
ATGGCTCTTACTTCATGCTTAGCTTTTACTCTTCTGGTCTGTGTCCTCAACCTCTGCATCAGAGGCACCTATGGCGACTATGGAGGCGGTTGGGTTGGTGGCCATGCCACTTTCTATGGAGGTGGTGATGCATCTGGCACAATGGGAGGTGCTTGTGGATATGGAAACTTGTACAGCCAAGGGTATGGAACCAACACTGCAGCACTGAGCACAGCTCTGTTCAACGATGGCTTGAGCTGCGGGTCTTGTTACGAAATGCGATGTGACAATGACCCTAAATGGTGCCTTCCCGGAAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTGGCTCAGTCCAATGACAATGGTGGCTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCTGAGCCGGCTTTCTTGCAAATCGCTCAGTACCGGGCTGGAATCGTCCCCGTCTCATTCAGAAGGGTTGCTTGTGTGAAAAAGGGAGGAATCAGATTCACAATCAACGGCCACTCCTACTTCAACTTGGTTTTGATCACAAACGTTGGAGGAGCAGGAGATGTGCACTCGGTTTCGATCAAGGGCTCAAAGACTGGTTGGCAATCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTACCTCAATGGACAGACCCTTTCTTTCCAGGTCACAACCAGTGACGGTAGGACTGTGACCAGCAACAACGTTGCCCCTGGTAACTGGCAGTTCGGTCAAACATTTTCAGGCAGTCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

26.92

Weight (kDa)

7.99

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 37 - 157 1.8e-07 EXPB1-like domain 1
DPBB_1 PF03330 66 - 151 1.3e-22 Lytic transglycolase
Expansin_C PF01357 162 - 239 1.7e-33 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 65, 282
AciI CCGC 3 cut(s) 87, 240, 309
AclI AACGTT 2 cut(s) 537, 708
AcoI YGGCCR 2 cut(s) 100, 502
AfaI GTAC 2 cut(s) 173, 425
AfiI CCNNNNNNNGG 1 cut(s) 606
AgsI TTSAA 2 cut(s) 223, 517
AjnI CCWGG 2 cut(s) 666, 715
AluBI AGCT 3 cut(s) 23, 215, 237
AluI AGCT 3 cut(s) 23, 215, 237
Alw21I GWGCWC 2 cut(s) 212, 561
Alw26I GTCTC 1 cut(s) 451
Alw44I GTGCAC 1 cut(s) 557
AoxI GGCC 3 cut(s) 100, 502, 616
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 200, 237
AspS9I GGNCC 1 cut(s) 616
AsuC2I CCSGG 2 cut(s) 291, 428
AsuHPI GGTGA 2 cut(s) 137, 298
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 2 cut(s) 65, 282
BanII GRGCYC 1 cut(s) 581
Bbv12I GWGCWC 2 cut(s) 212, 561
BbvI GCAGC 2 cut(s) 212, 224
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 2 cut(s) 668, 717
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 2 cut(s) 291, 428
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 1 cut(s) 760
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 201, 238
BlpI GCTNAGC 2 cut(s) 19, 396
BlsI GCNGC 2 cut(s) 202, 239
Bme1390I CCNGG 4 cut(s) 291, 428, 668, 717
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 4 cut(s) 67, 190, 284, 617
BmrFI CCNGG 4 cut(s) 291, 428, 668, 717
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 4 cut(s) 66, 118, 140, 306
BmuI ACTGGG 1 cut(s) 622
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 1 cut(s) 362
Bpu1102I GCTNAGC 2 cut(s) 19, 396
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 291, 428
BsaJI CCNNGG 2 cut(s) 178, 715
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 5 cut(s) 592, 617, 629, 678, 728
BseBI CCWGG 2 cut(s) 668, 717
BseDI CCNNGG 2 cut(s) 178, 715
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 4 cut(s) 197, 353, 387, 434
BseNI ACTGG 5 cut(s) 592, 617, 629, 678, 728
BseRI GAGGAG 1 cut(s) 558
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 2 cut(s) 212, 224
BshFI GGCC 3 cut(s) 102, 504, 618
BshNI GGYRCC 2 cut(s) 65, 282
BsiHKAI GWGCWC 2 cut(s) 212, 561
BsiSI CCGG 3 cut(s) 291, 401, 427
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 3 cut(s) 102, 504, 618
Bsp1286I GDGCHC 3 cut(s) 212, 561, 581
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 528, 570
Bsp1720I GCTNAGC 2 cut(s) 19, 396
BspACI CCGC 3 cut(s) 87, 240, 309
BspANI GGCC 3 cut(s) 102, 504, 618
BspCNI CTCAG 4 cut(s) 198, 352, 388, 433
BspLI GGNNCC 4 cut(s) 67, 190, 284, 617
BspMAI CTGCAG 1 cut(s) 202
BspT107I GGYRCC 2 cut(s) 65, 282
BsrFI RCCGGY 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 5 cut(s) 592, 617, 629, 678, 728
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 178, 715
BssMI GATC 2 cut(s) 528, 570
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 668, 717
Bst4CI ACNGT 2 cut(s) 686, 694
Bst6I CTCTTC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 5 cut(s) 19, 206, 339, 396, 420
BstKTI GATC 2 cut(s) 531, 573
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 2 cut(s) 528, 570
BstMWI GCNNNNNNNGC 4 cut(s) 63, 72, 237, 401
BstNI CCWGG 2 cut(s) 668, 717
BstSCI CCNGG 4 cut(s) 289, 426, 666, 715
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 212, 224
BstXI CCANNNNNNTGG 1 cut(s) 185
BsuRI GGCC 3 cut(s) 102, 504, 618
BtgZI GCGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 195, 203, 685
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 616
Csp6I GTAC 2 cut(s) 172, 424
CviAII CATG 3 cut(s) 15, 104, 601
CviQI GTAC 2 cut(s) 172, 424
DdeI CTNAG 5 cut(s) 19, 206, 339, 396, 420
DpnI GATC 2 cut(s) 530, 572
DpnII GATC 2 cut(s) 528, 570
EaeI YGGCCR 2 cut(s) 100, 502
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 666, 715
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 3 cut(s) 18, 107, 604
FaiI YATR 8 cut(s) 16, 72, 81, 105, 117, 162, 186, 602
FalI AAGNNNNNCTT 2 cut(s) 448, 480
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 14, 103, 600
FauI CCCGC 1 cut(s) 233
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 201, 238
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 2 cut(s) 201, 238
FspBI CTAG 1 cut(s) 760
GluI GCNGC 2 cut(s) 201, 238
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 3 cut(s) 102, 504, 618
HapII CCGG 3 cut(s) 291, 401, 427
Hin1II CATG 3 cut(s) 18, 107, 604
HinfI GANTC 3 cut(s) 435, 483, 489
HpaII CCGG 3 cut(s) 291, 401, 427
HphI GGTGA 2 cut(s) 137, 298
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 62, 455, 488
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 296, 450
HpyCH4III ACNGT 2 cut(s) 686, 694
HpyCH4IV ACGT 2 cut(s) 537, 708
HpyCH4V TGCA 6 cut(s) 57, 131, 200, 366, 412, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 72, 237, 401
HpyF3I CTNAG 5 cut(s) 19, 206, 339, 396, 420
HpySE526I ACGT 2 cut(s) 537, 708
Hsp92II CATG 3 cut(s) 18, 107, 604
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 2 cut(s) 528, 570
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 2 cut(s) 212, 224
LweI GCATC 4 cut(s) 66, 118, 140, 306
MaeI CTAG 1 cut(s) 760
MaeII ACGT 2 cut(s) 537, 708
MaeIII GTNAC 7 cut(s) 248, 263, 304, 670, 680, 694, 719
MalI GATC 2 cut(s) 530, 572
MboI GATC 2 cut(s) 528, 570
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 3 cut(s) 212, 561, 581
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 1 cut(s) 755
MluNI TGGCCA 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 133
MroNI GCCGGC 1 cut(s) 400
MscI TGGCCA 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 3 cut(s) 291, 401, 427
MspR9I CCNGG 4 cut(s) 291, 428, 668, 717
MvaI CCWGG 2 cut(s) 668, 717
MwoI GCNNNNNNNGC 4 cut(s) 63, 72, 237, 401
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 2 cut(s) 291, 428
NdeII GATC 2 cut(s) 528, 570
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 18, 107, 604
NlaIV GGNNCC 4 cut(s) 67, 190, 284, 617
NmuCI GTSAC 5 cut(s) 263, 304, 670, 680, 694
NsiI ATGCAT 1 cut(s) 133
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 435, 483, 489
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 202, 239
Psp1406I AACGTT 2 cut(s) 537, 708
Psp6I CCWGG 2 cut(s) 666, 715
PspGI CCWGG 2 cut(s) 666, 715
PspN4I GGNNCC 4 cut(s) 67, 190, 284, 617
PspPI GGNCC 1 cut(s) 616
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 173, 425
RsaNI GTAC 2 cut(s) 172, 424
SatI GCNGC 2 cut(s) 201, 238
Sau3AI GATC 2 cut(s) 528, 570
Sau96I GGNCC 1 cut(s) 616
ScrFI CCNGG 4 cut(s) 291, 428, 668, 717
SduI GDGCHC 3 cut(s) 212, 561, 581
SfaNI GCATC 4 cut(s) 66, 118, 140, 306
SfcI CTRYAG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 755
SsiI CCGC 3 cut(s) 87, 240, 309
SspMI CTAG 1 cut(s) 760
StyD4I CCNGG 4 cut(s) 289, 426, 666, 715
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 686, 694
TaiI ACGT 2 cut(s) 540, 711
TaqI TCGA 2 cut(s) 387, 569
TaqII GACCGA 1 cut(s) 722
TasI AATT 1 cut(s) 755
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 3 cut(s) 435, 483, 489
TscAI CASTG 3 cut(s) 202, 210, 685
TseFI GTSAC 5 cut(s) 263, 304, 670, 680, 694
TseI GCWGC 2 cut(s) 200, 237
Tsp45I GTSAC 5 cut(s) 263, 304, 670, 680, 694
TspRI CASTG 3 cut(s) 202, 210, 685
VneI GTGCAC 1 cut(s) 557
XspI CTAG 1 cut(s) 760
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.