Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

7005636 .. 7007459

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTTTACTTCATGCTTGGCTTTTACTCTTCTGGTCTCTGTCCTCAACCTCTGCATCAGAGGCACCTATGGCGACTATGGAGGCGGTTGGGTTGGTGGCCATGCCACTTTCTATGGAGGTGGTGATGCATCTGGCACAATGGGAGGTGCTTGTGGATATGGAAACTTGTACAGCCAAGGGTATGGAACCAACACTGCAGCACTGAGCACAGCTCTGTTCAACGATGGCTTGAGCTGCGGGTCTTGTTACGAAATGCGATGTGACAATGACCCTAAATGGTGCCTTCCCGGAAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTGGCTCAGTCCAATGACAATGGTGGCTGGTGCAACCCTCCCCTCCAGCACTTCGATTTGGCTGAGCCGGCTTTCTTGCAAATCGCTCAGTACCGGGCTGGAATCGTCCCGGTCTCATTCAGAAGGGTTGCTTGTGTCAAAAAGGGAGGAATCAGATTCACAATCAATGGCCACTCCTACTTCAACTTGGTTTTGATCACAAACGTTGGAGGAGCAGGAGATGTGCACTCGGTTTCGATCAAGGGCTCAAAGACTGGTTGGCAATCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTACCTCAATGGACAGACCCTTTCTTTCCAGGTCACAACCAGTGACGGTAGGACTGTGACCAGCAACAACGTTGCCCCTGGTAACTGGCAGTTCGGTCAAACATTTTCGGGCAGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

26.94

Weight (kDa)

8.03

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 157	1.8e-07	EXPB1-like domain 1
DPBB_1	PF03330	66 - 151	1.3e-22	Lytic transglycolase
Expansin_C	PF01357	162 - 239	1.7e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 282
AciI	CCGC	3 cut(s)	87, 240, 309
AclI	AACGTT	2 cut(s)	537, 708
AcoI	YGGCCR	2 cut(s)	100, 502
AfaI	GTAC	2 cut(s)	173, 425
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	223, 517
AjnI	CCWGG	2 cut(s)	666, 715
AluBI	AGCT	2 cut(s)	215, 237
AluI	AGCT	2 cut(s)	215, 237
Alw21I	GWGCWC	2 cut(s)	212, 561
Alw26I	GTCTC	2 cut(s)	43, 451
Alw44I	GTGCAC	1 cut(s)	557
AoxI	GGCC	3 cut(s)	100, 502, 616
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	200, 237
AspS9I	GGNCC	1 cut(s)	616
AsuC2I	CCSGG	3 cut(s)	291, 428, 443
AsuHPI	GGTGA	2 cut(s)	137, 298
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	2 cut(s)	102, 504
BanI	GGYRCC	2 cut(s)	65, 282
BanII	GRGCYC	1 cut(s)	581
Bbv12I	GWGCWC	2 cut(s)	212, 561
BbvI	GCAGC	2 cut(s)	212, 224
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	668, 717
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	3 cut(s)	291, 428, 443
BcoDI	GTCTC	2 cut(s)	43, 451
BfaI	CTAG	1 cut(s)	760
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	201, 238
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	2 cut(s)	202, 239
Bme1390I	CCNGG	5 cut(s)	291, 428, 443, 668, 717
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	4 cut(s)	67, 190, 284, 617
BmrFI	CCNGG	5 cut(s)	291, 428, 443, 668, 717
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	4 cut(s)	66, 118, 140, 306
BmuI	ACTGGG	1 cut(s)	622
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	3 cut(s)	291, 428, 443
BsaI	GGTCTC	2 cut(s)	43, 451
BsaJI	CCNNGG	2 cut(s)	178, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	5 cut(s)	592, 617, 629, 678, 728
BseBI	CCWGG	2 cut(s)	668, 717
BseDI	CCNNGG	2 cut(s)	178, 715
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMII	CTCAG	4 cut(s)	197, 353, 387, 434
BseNI	ACTGG	5 cut(s)	592, 617, 629, 678, 728
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	212, 224
BshFI	GGCC	3 cut(s)	102, 504, 618
BshNI	GGYRCC	2 cut(s)	65, 282
BsiHKAI	GWGCWC	2 cut(s)	212, 561
BsiSI	CCGG	4 cut(s)	291, 401, 427, 443
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	2 cut(s)	43, 451
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	102, 504, 618
Bso31I	GGTCTC	2 cut(s)	43, 451
Bsp1286I	GDGCHC	3 cut(s)	212, 561, 581
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	528, 570
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	87, 240, 309
BspANI	GGCC	3 cut(s)	102, 504, 618
BspCNI	CTCAG	4 cut(s)	198, 352, 388, 433
BspLI	GGNNCC	4 cut(s)	67, 190, 284, 617
BspMAI	CTGCAG	1 cut(s)	202
BspT107I	GGYRCC	2 cut(s)	65, 282
BspTNI	GGTCTC	2 cut(s)	43, 451
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	5 cut(s)	592, 617, 629, 678, 728
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	178, 715
BssMI	GATC	2 cut(s)	528, 570
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	668, 717
Bst4CI	ACNGT	2 cut(s)	686, 694
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	206, 339, 396, 420
BstKTI	GATC	2 cut(s)	531, 573
BstMAI	GTCTC	2 cut(s)	43, 451
BstMBI	GATC	2 cut(s)	528, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 72, 237, 401
BstNI	CCWGG	2 cut(s)	668, 717
BstSCI	CCNGG	5 cut(s)	289, 426, 441, 666, 715
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	212, 224
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	102, 504, 618
BtgZI	GCGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 203, 685
Cac8I	GCNNGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	172, 424
CviAII	CATG	3 cut(s)	15, 104, 601
CviQI	GTAC	2 cut(s)	172, 424
DdeI	CTNAG	4 cut(s)	206, 339, 396, 420
DpnI	GATC	2 cut(s)	530, 572
DpnII	GATC	2 cut(s)	528, 570
EaeI	YGGCCR	2 cut(s)	100, 502
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	2 cut(s)	43, 451
EcoRII	CCWGG	2 cut(s)	666, 715
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	18, 107, 604
FaiI	YATR	8 cut(s)	16, 72, 81, 105, 117, 162, 186, 602
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	3 cut(s)	14, 103, 600
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	201, 238
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	201, 238
FspBI	CTAG	1 cut(s)	760
GluI	GCNGC	2 cut(s)	201, 238
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	3 cut(s)	102, 504, 618
HapII	CCGG	4 cut(s)	291, 401, 427, 443
Hin1II	CATG	3 cut(s)	18, 107, 604
HinfI	GANTC	3 cut(s)	435, 483, 489
HpaII	CCGG	4 cut(s)	291, 401, 427, 443
HphI	GGTGA	2 cut(s)	137, 298
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	62, 455, 488
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	296, 450
HpyCH4III	ACNGT	2 cut(s)	686, 694
HpyCH4IV	ACGT	2 cut(s)	537, 708
HpyCH4V	TGCA	6 cut(s)	57, 131, 200, 366, 412, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 72, 237, 401
HpyF3I	CTNAG	4 cut(s)	206, 339, 396, 420
HpySE526I	ACGT	2 cut(s)	537, 708
Hsp92II	CATG	3 cut(s)	18, 107, 604
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	528, 570
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	2 cut(s)	212, 224
LweI	GCATC	4 cut(s)	66, 118, 140, 306
MaeI	CTAG	1 cut(s)	760
MaeII	ACGT	2 cut(s)	537, 708
MaeIII	GTNAC	7 cut(s)	248, 263, 304, 670, 680, 694, 719
MalI	GATC	2 cut(s)	530, 572
MboI	GATC	2 cut(s)	528, 570
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	212, 561, 581
MlsI	TGGCCA	2 cut(s)	102, 504
MluCI	AATT	1 cut(s)	755
MluNI	TGGCCA	2 cut(s)	102, 504
MmeI	TCCRAC	1 cut(s)	520
Mox20I	TGGCCA	2 cut(s)	102, 504
Mph1103I	ATGCAT	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	400
MscI	TGGCCA	2 cut(s)	102, 504
Msp20I	TGGCCA	2 cut(s)	102, 504
MspI	CCGG	4 cut(s)	291, 401, 427, 443
MspR9I	CCNGG	5 cut(s)	291, 428, 443, 668, 717
MvaI	CCWGG	2 cut(s)	668, 717
MwoI	GCNNNNNNNGC	4 cut(s)	63, 72, 237, 401
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	3 cut(s)	291, 428, 443
NdeII	GATC	2 cut(s)	528, 570
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	3 cut(s)	18, 107, 604
NlaIV	GGNNCC	4 cut(s)	67, 190, 284, 617
NmuCI	GTSAC	5 cut(s)	263, 304, 670, 680, 694
NsiI	ATGCAT	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	435, 483, 489
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	202, 239
Psp1406I	AACGTT	2 cut(s)	537, 708
Psp6I	CCWGG	2 cut(s)	666, 715
PspGI	CCWGG	2 cut(s)	666, 715
PspN4I	GGNNCC	4 cut(s)	67, 190, 284, 617
PspPI	GGNCC	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	173, 425
RsaNI	GTAC	2 cut(s)	172, 424
SatI	GCNGC	2 cut(s)	201, 238
Sau3AI	GATC	2 cut(s)	528, 570
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	5 cut(s)	291, 428, 443, 668, 717
SduI	GDGCHC	3 cut(s)	212, 561, 581
SfaNI	GCATC	4 cut(s)	66, 118, 140, 306
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	755
SsiI	CCGC	3 cut(s)	87, 240, 309
SspMI	CTAG	1 cut(s)	760
StyD4I	CCNGG	5 cut(s)	289, 426, 441, 666, 715
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	686, 694
TaiI	ACGT	2 cut(s)	540, 711
TaqI	TCGA	2 cut(s)	387, 569
TaqII	GACCGA	1 cut(s)	722
TasI	AATT	1 cut(s)	755
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	435, 483, 489
TscAI	CASTG	3 cut(s)	202, 210, 685
TseFI	GTSAC	5 cut(s)	263, 304, 670, 680, 694
TseI	GCWGC	2 cut(s)	200, 237
Tsp45I	GTSAC	5 cut(s)	263, 304, 670, 680, 694
TspRI	CASTG	3 cut(s)	202, 210, 685
VneI	GTGCAC	1 cut(s)	557
XspI	CTAG	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.