Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003292

Physical Location & Seq

Genomic Coordinates Forward (+)

10667297 .. 10668907

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAGCTTCAGCATTGTCTCTAGCTCCTCTAGCTCTTCTTGTTCTCTTCAATCTCCATTTTCACTCTACTTTTGCCGATTATGGTGGTTGGAACGGCGGCCACGCCACATTCTATGGTGGTGGTGATGCCTCAGGCACAATGGGAGGAGCATGTGGTTATGGGAACTTATATAGCCAAGGGTATGGAACCAACACTGCAGCACTGAGCACAGCTTTGTTCAACGATGGCTTGAGCTGTGGCTCTTGCTATGAAATGAGGTGTGACAATGACCCGAGGTGGTGCCGCCCCGGAAGCATCATTGTGACTGCTACCAACTTCTGCCCTCCTAACTTTGCGCAGGCCAATGACAATGGCGGTTGGTGCAACCCTCCCTCCAGCACTTCGATTTGGCTGAGCCTGCTTTCTTGCAAATCGCACAATACCGTGCCGGAATTGTTCCCGTCGCCTTCAGAAGTACCGTGTGTGAAGAAAGGAGGAGTAAGGTTCACCATCAATGGTCACTCCTACTTCAACCTGGTTCTGATCACCAACGTCGGCGGTGCAGGGGACGTTCATTCGGTTTCGATCAAGGGGTCCAGAACTGGTTGGCAATCCATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAACTCATACCTCAACGGCCAACCCCTCTCCTTCCAAGTCACCACCAGTGACGGTAGAACCGTGACAAGCTACAACGTGGCGCCGGGTAATTGGCAGTTTGGCCAGACTTACCAAGGGGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

252

Amino Acids

26.83

Weight (kDa)

6.97

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 124	5e-06	EXPB1-like domain 1
DPBB_1	PF03330	66 - 115	2.2e-12	Lytic transglycolase
Expansin_C	PF01357	161 - 238	4.6e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40610 AT5G05290
fragaria_vesca	FvH4_3g40360 FvH4_7g25860
malus_domestica	MD01G1166700.v1.1 MD03G1052400.v1.1 MD07G1233100.v1.1 MD11G1054500.v1.1
prunus_persica	Prupe.2G263600_v2.0.a1 Prupe.2G263600_v2.0.a1 Prupe.6G042000_v2.0.a1
pyrus_communis	pycom01g18000 pycom03g04180 pycom07g21090 pycom11g04450
rosa_chinensis	RchiOBHm_Chr1g0372131 RchiOBHm_Chr5g0072761
rosa_laevigata	RLG00000026920 RLG00000036330
rosa_multiflora	Rmu_co8393983.1_g000001 Rmu_sc0001755.1_g000023 Rmu_sc0003160.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008420 Rroxscaffold_4G00285220
rosa_rugosa	Rorug01G0370000 Rorug05G0419700
rosa_samantha	Rh1AG378400 Rh1BG341700 Rh1CG355100 Rh1DG372800 Rh5AG476900 Rh5BG496800 Rh5CG520700 Rh5DG509200
rosa_wichuraiana	Rw1G033290 Rw5G044260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	282, 709
AciI	CCGC	4 cut(s)	99, 286, 357, 540
AcoI	YGGCCR	3 cut(s)	100, 646, 730
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	52, 223, 514
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	6 cut(s)	8, 26, 35, 215, 237, 699
AluI	AGCT	6 cut(s)	8, 26, 35, 215, 237, 699
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	5 cut(s)	100, 342, 613, 646, 730
ApeKI	GCWGC	2 cut(s)	5, 200
AspLEI	GCGC	2 cut(s)	340, 712
AspS9I	GGNCC	2 cut(s)	576, 613
AsuC2I	CCSGG	2 cut(s)	291, 714
AsuHPI	GGTGA	4 cut(s)	137, 481, 520, 661
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	2 cut(s)	282, 709
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	17, 212
BccI	CCATC	2 cut(s)	221, 500
BceAI	ACGGC	2 cut(s)	112, 661
BciT130I	CCWGG	1 cut(s)	518
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	2 cut(s)	291, 714
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	3 cut(s)	23, 32, 757
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	713
BisI	GCNGC	4 cut(s)	6, 100, 201, 286
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	4 cut(s)	7, 101, 202, 287
Bme1390I	CCNGG	3 cut(s)	291, 518, 714
Bme18I	GGWCC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	576, 613
BmiI	GGNNCC	5 cut(s)	190, 284, 577, 614, 711
BmrFI	CCNGG	3 cut(s)	291, 518, 714
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	2 cut(s)	118, 306
BmuI	ACTGGG	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	2 cut(s)	291, 714
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	4 cut(s)	178, 275, 289, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bse1I	ACTGG	4 cut(s)	589, 614, 626, 675
Bse21I	CCTNAGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	4 cut(s)	178, 275, 289, 742
BseMII	CTCAG	3 cut(s)	147, 197, 386
BseNI	ACTGG	4 cut(s)	589, 614, 626, 675
BseRI	GAGGAG	3 cut(s)	18, 162, 492
BseXI	GCAGC	2 cut(s)	17, 212
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	5 cut(s)	102, 344, 615, 648, 732
BshNI	GGYRCC	2 cut(s)	282, 709
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	291, 431, 713
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	5 cut(s)	102, 344, 615, 648, 732
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	525, 567
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	4 cut(s)	99, 286, 357, 540
BspANI	GGCC	5 cut(s)	102, 344, 615, 648, 732
BspCNI	CTCAG	3 cut(s)	146, 198, 387
BspLI	GGNNCC	5 cut(s)	190, 284, 577, 614, 711
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	2 cut(s)	282, 709
BsrI	ACTGG	4 cut(s)	589, 614, 626, 675
BssECI	CCNNGG	4 cut(s)	178, 275, 289, 742
BssMI	GATC	2 cut(s)	525, 567
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	2 cut(s)	178, 742
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	4 cut(s)	427, 462, 683, 691
Bst6I	CTCTTC	2 cut(s)	42, 53
BstACI	GRCGYC	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	342, 401
BstDEI	CTNAG	3 cut(s)	133, 206, 395
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	2 cut(s)	340, 712
BstKTI	GATC	2 cut(s)	528, 570
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	525, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 400
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	3 cut(s)	289, 516, 712
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	17, 212
BstXI	CCANNNNNNTGG	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	102, 344, 615, 648, 732
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 203, 682
Cac8I	GCNNGC	2 cut(s)	342, 401
CfoI	GCGC	2 cut(s)	340, 712
Cfr13I	GGNCC	2 cut(s)	576, 613
CsiI	ACCWGGT	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	153, 598
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	3 cut(s)	133, 206, 395
DinI	GGCGCC	1 cut(s)	711
DpnI	GATC	2 cut(s)	527, 569
DpnII	GATC	2 cut(s)	525, 567
EaeI	YGGCCR	3 cut(s)	100, 646, 730
Eam1104I	CTCTTC	2 cut(s)	42, 53
EarI	CTCTTC	2 cut(s)	42, 53
Eco130I	CCWWGG	2 cut(s)	178, 742
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	178, 742
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
ErhI	CCWWGG	2 cut(s)	178, 742
FaeI	CATG	2 cut(s)	156, 601
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	152, 597
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	6, 100, 201, 286
Fsp4HI	GCNGC	4 cut(s)	6, 100, 201, 286
FspBI	CTAG	3 cut(s)	23, 32, 757
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	2 cut(s)	339, 711
GluI	GCNGC	4 cut(s)	6, 100, 201, 286
GsuI	CTGGAG	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	5 cut(s)	102, 344, 615, 648, 732
HapII	CCGG	3 cut(s)	291, 431, 713
HhaI	GCGC	2 cut(s)	340, 712
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	2 cut(s)	156, 601
Hin6I	GCGC	2 cut(s)	338, 710
HinP1I	GCGC	2 cut(s)	338, 710
HpaII	CCGG	3 cut(s)	291, 431, 713
HphI	GGTGA	4 cut(s)	137, 481, 520, 661
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	2 cut(s)	454, 525
Hpy188III	TCNNGA	2 cut(s)	579, 603
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	2 cut(s)	448, 539
HpyAV	CCTTC	2 cut(s)	459, 670
HpyCH4III	ACNGT	4 cut(s)	427, 462, 683, 691
HpyCH4IV	ACGT	3 cut(s)	534, 552, 705
HpyCH4V	TGCA	4 cut(s)	200, 366, 411, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 400
HpyF3I	CTNAG	3 cut(s)	133, 206, 395
HpySE526I	ACGT	3 cut(s)	534, 552, 705
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	2 cut(s)	156, 601
HspAI	GCGC	2 cut(s)	338, 710
KasI	GGCGCC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	525, 567
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	31, 149
Lsp1109I	GCAGC	2 cut(s)	17, 212
LweI	GCATC	2 cut(s)	118, 306
MabI	ACCWGGT	1 cut(s)	516
MaeI	CTAG	3 cut(s)	23, 32, 757
MaeII	ACGT	3 cut(s)	534, 552, 705
MaeIII	GTNAC	6 cut(s)	263, 304, 500, 667, 677, 691
MalI	GATC	2 cut(s)	527, 569
MboI	GATC	2 cut(s)	525, 567
MboII	GAAGA	3 cut(s)	29, 40, 481
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	3 cut(s)	434, 718, 752
MluNI	TGGCCA	1 cut(s)	732
Mly113I	GGCGCC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	3 cut(s)	291, 431, 713
MspR9I	CCNGG	3 cut(s)	291, 518, 714
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	5 cut(s)	11, 32, 294, 363, 400
NarI	GGCGCC	1 cut(s)	710
NciI	CCSGG	2 cut(s)	291, 714
NdeII	GATC	2 cut(s)	525, 567
NlaIII	CATG	2 cut(s)	156, 601
NlaIV	GGNNCC	5 cut(s)	190, 284, 577, 614, 711
NmuCI	GTSAC	6 cut(s)	263, 304, 500, 667, 677, 691
NsbI	TGCGCA	1 cut(s)	339
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PkrI	GCNGC	4 cut(s)	7, 101, 202, 287
PluTI	GGCGCC	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	5 cut(s)	190, 284, 577, 614, 711
PspPI	GGNCC	2 cut(s)	576, 613
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	4 cut(s)	6, 100, 201, 286
Sau3AI	GATC	2 cut(s)	525, 567
Sau96I	GGNCC	2 cut(s)	576, 613
ScrFI	CCNGG	3 cut(s)	291, 518, 714
SduI	GDGCHC	1 cut(s)	212
SexAI	ACCWGGT	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	118, 306
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	711
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	434, 718, 752
SsiI	CCGC	4 cut(s)	99, 286, 357, 540
SspDI	GGCGCC	1 cut(s)	709
SspMI	CTAG	3 cut(s)	23, 32, 757
StyD4I	CCNGG	3 cut(s)	289, 516, 712
StyI	CCWWGG	2 cut(s)	178, 742
TaaI	ACNGT	4 cut(s)	427, 462, 683, 691
TaiI	ACGT	3 cut(s)	537, 555, 708
TaqI	TCGA	2 cut(s)	386, 566
TasI	AATT	3 cut(s)	434, 718, 752
TauI	GCSGC	2 cut(s)	102, 288
TscAI	CASTG	3 cut(s)	202, 210, 682
TseFI	GTSAC	6 cut(s)	263, 304, 500, 667, 677, 691
TseI	GCWGC	2 cut(s)	5, 200
Tsp45I	GTSAC	6 cut(s)	263, 304, 500, 667, 677, 691
TspDTI	ATGAA	2 cut(s)	267, 545
TspRI	CASTG	3 cut(s)	202, 210, 682
VpaK11BI	GGWCC	1 cut(s)	576
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	3 cut(s)	23, 32, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.