Rroxscaffold_4G00285220

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003292
Physical Location & Seq
Forward (+)
6611374 .. 6612825
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285220.1

Sequence Viewer

Length: 669 bp
ATGGCTTTTACTTCATGCTTAGCTTTTACTCTTCTGGTCTGTGTCCTGAACCTCTGCATCAGAGGCACCTATGGCGACTATGGAGGCGGTTGGGTTGGTGGCCATGCCACTTTCTATGGAGGTGGTGATGCATCTGGCACAATGGCTGCGGGTCTTGTTACGAAATGCGATGTGACAATGACCCTAAATGGTGCCTTCCCGGAAGCATCATCGTCACCGCCACCAACTTCTGCCCTCCCAACTTGGCTCAGTCCAATGACAATGGTGGCTGGTGCAACCCTCCTCCAGCACTTCGATTTGGCTGAGCCAGCTTTCTTGCAAATCGCTCAGTACCGGGCTGGAATCGTCCCCGTCTCATTCAGAAGGGTTGCTTGTGTGAAAAAGGGAGGAATAAGATTCACAATCAATGGCCACTCCTACTTCAACTTGGTTTTGATCACAAACGTTGGAGGAGCAGGAGATGTGCACTCGGTTTCGATCAAGGGCTCAAAGACTGGTTGGCAATCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTACCTCAATGGACAGACCCTTTCTTTCCAGGTCACAACCAGTGACGGTAGGACTGTGACCAGCAACAACGTTGCCCCTGGTAACTGGCAGTTCGGACAAACATTTTCGGGCAGTCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

222

Amino Acids

23.53

Weight (kDa)

8.9

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Expansin_C PF01357 131 - 208 1.3e-33 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 65, 191
AciI CCGC 3 cut(s) 87, 149, 218
AclI AACGTT 2 cut(s) 444, 615
AcoI YGGCCR 2 cut(s) 100, 409
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 2 cut(s) 573, 622
AluBI AGCT 2 cut(s) 23, 311
AluI AGCT 2 cut(s) 23, 311
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 464
AoxI GGCC 3 cut(s) 100, 409, 523
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 523
AsuC2I CCSGG 2 cut(s) 200, 335
AsuHPI GGTGA 2 cut(s) 137, 207
BaeGI GKGCMC 1 cut(s) 468
BalI TGGCCA 2 cut(s) 102, 411
BanI GGYRCC 2 cut(s) 65, 191
BanII GRGCYC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 575, 624
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 2 cut(s) 200, 335
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 667
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 2 cut(s) 19, 303
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 4 cut(s) 200, 335, 575, 624
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 3 cut(s) 67, 193, 524
BmrFI CCNGG 4 cut(s) 200, 335, 575, 624
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 4 cut(s) 66, 118, 140, 215
BmuI ACTGGG 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 269
Bpu1102I GCTNAGC 2 cut(s) 19, 303
BpuMI CCSGG 2 cut(s) 200, 335
BsaJI CCNNGG 1 cut(s) 622
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 5 cut(s) 499, 524, 536, 585, 635
BseBI CCWGG 2 cut(s) 575, 624
BseDI CCNNGG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 3 cut(s) 262, 294, 341
BseNI ACTGG 5 cut(s) 499, 524, 536, 585, 635
BseRI GAGGAG 2 cut(s) 272, 465
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 3 cut(s) 102, 411, 525
BshNI GGYRCC 2 cut(s) 65, 191
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 200, 334
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 3 cut(s) 102, 411, 525
Bsp1286I GDGCHC 2 cut(s) 468, 488
Bsp143I GATC 2 cut(s) 435, 477
Bsp1720I GCTNAGC 2 cut(s) 19, 303
BspACI CCGC 3 cut(s) 87, 149, 218
BspANI GGCC 3 cut(s) 102, 411, 525
BspCNI CTCAG 3 cut(s) 261, 295, 340
BspLI GGNNCC 3 cut(s) 67, 193, 524
BspT107I GGYRCC 2 cut(s) 65, 191
BsrI ACTGG 5 cut(s) 499, 524, 536, 585, 635
BssECI CCNNGG 1 cut(s) 622
BssMI GATC 2 cut(s) 435, 477
Bst2UI CCWGG 2 cut(s) 575, 624
Bst4CI ACNGT 2 cut(s) 593, 601
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 19, 248, 303, 327
BstKTI GATC 2 cut(s) 438, 480
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 435, 477
BstMWI GCNNNNNNNGC 3 cut(s) 63, 72, 308
BstNI CCWGG 2 cut(s) 575, 624
BstSCI CCNGG 4 cut(s) 198, 333, 573, 622
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 102, 411, 525
BtgZI GCGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 331
CviAII CATG 3 cut(s) 15, 104, 508
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 4 cut(s) 19, 248, 303, 327
DpnI GATC 2 cut(s) 437, 479
DpnII GATC 2 cut(s) 435, 477
EaeI YGGCCR 2 cut(s) 100, 409
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 573, 622
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 488
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 18, 107, 511
FaiI YATR 6 cut(s) 16, 72, 81, 105, 117, 509
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 14, 103, 507
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 667
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 102, 411, 525
HapII CCGG 2 cut(s) 200, 334
Hin1II CATG 3 cut(s) 18, 107, 511
HinfI GANTC 2 cut(s) 342, 396
HpaII CCGG 2 cut(s) 200, 334
HphI GGTGA 2 cut(s) 137, 207
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 62, 362, 641
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 205, 357
HpyCH4III ACNGT 2 cut(s) 593, 601
HpyCH4IV ACGT 2 cut(s) 444, 615
HpyCH4V TGCA 5 cut(s) 57, 131, 275, 319, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 72, 308
HpyF3I CTNAG 4 cut(s) 19, 248, 303, 327
HpySE526I ACGT 2 cut(s) 444, 615
Hsp92II CATG 3 cut(s) 18, 107, 511
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 2 cut(s) 435, 477
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 4 cut(s) 66, 118, 140, 215
MaeI CTAG 1 cut(s) 667
MaeII ACGT 2 cut(s) 444, 615
MaeIII GTNAC 7 cut(s) 157, 172, 213, 577, 587, 601, 626
MalI GATC 2 cut(s) 437, 479
MboI GATC 2 cut(s) 435, 477
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 468, 488
MlsI TGGCCA 2 cut(s) 102, 411
MluCI AATT 1 cut(s) 662
MluNI TGGCCA 2 cut(s) 102, 411
MmeI TCCRAC 1 cut(s) 427
Mox20I TGGCCA 2 cut(s) 102, 411
Mph1103I ATGCAT 1 cut(s) 133
MscI TGGCCA 2 cut(s) 102, 411
Msp20I TGGCCA 2 cut(s) 102, 411
MspI CCGG 2 cut(s) 200, 334
MspR9I CCNGG 4 cut(s) 200, 335, 575, 624
MvaI CCWGG 2 cut(s) 575, 624
MwoI GCNNNNNNNGC 3 cut(s) 63, 72, 308
NciI CCSGG 2 cut(s) 200, 335
NdeII GATC 2 cut(s) 435, 477
NlaIII CATG 3 cut(s) 18, 107, 511
NlaIV GGNNCC 3 cut(s) 67, 193, 524
NmuCI GTSAC 5 cut(s) 172, 213, 577, 587, 601
NsiI ATGCAT 1 cut(s) 133
PfeI GAWTC 2 cut(s) 342, 396
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 148
Psp1406I AACGTT 2 cut(s) 444, 615
Psp6I CCWGG 2 cut(s) 573, 622
PspGI CCWGG 2 cut(s) 573, 622
PspN4I GGNNCC 3 cut(s) 67, 193, 524
PspPI GGNCC 1 cut(s) 523
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 435, 477
Sau96I GGNCC 1 cut(s) 523
ScrFI CCNGG 4 cut(s) 200, 335, 575, 624
SduI GDGCHC 2 cut(s) 468, 488
SetI ASST 9 cut(s) 25, 54, 71, 124, 313, 447, 552, 579, 618
SfaNI GCATC 4 cut(s) 66, 118, 140, 215
Sse9I AATT 1 cut(s) 662
SsiI CCGC 3 cut(s) 87, 149, 218
SspMI CTAG 1 cut(s) 667
StyD4I CCNGG 4 cut(s) 198, 333, 573, 622
TaaI ACNGT 2 cut(s) 593, 601
TaiI ACGT 2 cut(s) 447, 618
TaqI TCGA 2 cut(s) 294, 476
TasI AATT 1 cut(s) 662
TfiI GAWTC 2 cut(s) 342, 396
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 5 cut(s) 172, 213, 577, 587, 601
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 5 cut(s) 172, 213, 577, 587, 601
TspRI CASTG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 464
XspI CTAG 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.