AT2G40620
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16954418 .. 16957183
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40620.1

Sequence Viewer

Length: 1104 bp
ATGGAGGATCCTTCTAACCCACAACCAAACCAGAGCAATCTCTCGCAATGCCCGCCTTTAGCCACAGCTCCGACACCTGCGCCAGTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTCCAATTCCGTCTCCCTGAAGATCTGGATCTCTCTGAACCATTCGGAGGATTCGATGAGCTTGGATCCGAAGATGATCTCTTTTGCTCATACATGGACATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGGCTGGTCCTTCTGCTCCTAGGTCTGATAACCCGTTTTCCGCTGAGAATGGAGGTGCGGAGGCTGGGAATTCGAGACCTCGACACAGGCATAGCCTCTCCGTTGATGGCTCTTCGACTTTGGAGTCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAGCTCGCTGAGCTTTGGGTCGTCGACCCTAAAAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGAGGAAGGCTCGGTATATCTTGGAGCTCGAGAGGAAAGTTCAGACCTTGCAAACTGAAGCTACTACCCTTTCAGCACAGTTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAGAATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCACTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTCGCCACGGGAGAAGTCTCACCCGCGGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCAACAACCACAACAATCCTTCTTTCAACATCATCATCAGCAACAAACCGATGCTCAAAACCTGCAACAAATGACTCATCAGTTTCATCTCTTCCAGCCTAACAACAACCAGAACCAATCTTCTCGCACAAACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCTCATTCCTATTCAGAGGCAATGCATGAAGACCATCTTGGCCGGTTACAGGGGCTTGACATTAGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGCAGCAGCACTATGTGA

Protein Analysis

367

Amino Acids

40.67

Weight (kDa)

6.06

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 148 - 198 1.6e-06 Basic region leucine zipper
bZIP_1 PF00170 150 - 208 2.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AarI CACCTGC 1 cut(s) 85
AasI GACNNNNNNGTC 1 cut(s) 382
Acc36I ACCTGC 2 cut(s) 85, 855
AccB7I CCANNNNNTGG 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 929
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 746
AccIII TCCGGA 2 cut(s) 236, 242
AciI CCGC 7 cut(s) 53, 249, 300, 317, 744, 746, 927
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 2 cut(s) 328, 719
AcuI CTGAAG 2 cut(s) 159, 576
AdeI CACNNNGTG 1 cut(s) 1101
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 89, 167, 766, 1021
AgsI TTSAA 1 cut(s) 812
AjuI GAANNNNNNNTTGG 2 cut(s) 993, 1025
Alw21I GWGCWC 3 cut(s) 112, 528, 633
Alw26I GTCTC 4 cut(s) 137, 328, 591, 742
Ama87I CYCGRG 1 cut(s) 527
Aor13HI TCCGGA 2 cut(s) 236, 242
AoxI GGCC 1 cut(s) 1012
ApeKI GCWGC 4 cut(s) 485, 1038, 1089, 1092
ApoI RAATTY 2 cut(s) 328, 719
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 92, 121, 266
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 1 cut(s) 732
AsuII TTCGAA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 3 cut(s) 92, 121, 266
AvrII CCTAGG 1 cut(s) 278
BamHI GGATCC 5 cut(s) 7, 185, 233, 239, 245
BanII GRGCYC 2 cut(s) 528, 633
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 3 cut(s) 112, 528, 633
BbvI GCAGC 2 cut(s) 472, 1050
BccI CCATC 2 cut(s) 359, 1014
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 4 cut(s) 137, 328, 591, 742
BfaI CTAG 1 cut(s) 279
BfuAI ACCTGC 2 cut(s) 85, 855
BglII AGATCT 1 cut(s) 142
BisI GCNGC 4 cut(s) 486, 1039, 1090, 1093
BlnI CCTAGG 1 cut(s) 278
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 4 cut(s) 487, 1040, 1091, 1094
Bme1390I CCNGG 1 cut(s) 965
Bme18I GGWCC 3 cut(s) 92, 121, 266
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 3 cut(s) 92, 121, 266
BmiI GGNNCC 6 cut(s) 9, 187, 235, 241, 247, 411
BmrFI CCNGG 1 cut(s) 965
BmsI GCATC 5 cut(s) 260, 667, 739, 826, 952
BpiI GAAGAC 1 cut(s) 1008
BplI GAGNNNNNCTC 2 cut(s) 493, 525
Bpu1102I GCTNAGC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 965
BsaBI GATNNNNATC 4 cut(s) 147, 238, 244, 250
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 5 cut(s) 278, 726, 744, 760, 963
BsaWI WCCGGW 3 cut(s) 102, 236, 242
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 167, 766, 1021
Bse118I RCCGGY 1 cut(s) 1014
Bse1I ACTGG 2 cut(s) 83, 610
Bse3DI GCAATG 2 cut(s) 53, 999
Bse8I GATNNNNATC 4 cut(s) 147, 238, 244, 250
BseAI TCCGGA 2 cut(s) 236, 242
BseDI CCNNGG 5 cut(s) 278, 726, 744, 760, 963
BseGI GGATG 2 cut(s) 251, 754
BseJI GATNNNNATC 4 cut(s) 147, 238, 244, 250
BseLI CCNNNNNNNGG 4 cut(s) 89, 167, 766, 1021
BseMI GCAATG 2 cut(s) 53, 999
BseMII CTCAG 3 cut(s) 294, 417, 609
BseNI ACTGG 2 cut(s) 83, 610
BseXI GCAGC 2 cut(s) 472, 1050
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 746
BshFI GGCC 1 cut(s) 1014
BsiHKAI GWGCWC 3 cut(s) 112, 528, 633
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 5 cut(s) 103, 237, 243, 965, 1015
BslI CCNNNNNNNGG 4 cut(s) 89, 167, 766, 1021
BsmAI GTCTC 4 cut(s) 137, 328, 591, 742
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 1014
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 112, 528, 633
Bsp13I TCCGGA 2 cut(s) 236, 242
Bsp143I GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 7 cut(s) 53, 249, 300, 317, 744, 746, 927
BspANI GGCC 1 cut(s) 1014
BspCNI CTCAG 3 cut(s) 295, 418, 610
BspEI TCCGGA 2 cut(s) 236, 242
BspFNI CGCG 1 cut(s) 746
BspLI GGNNCC 6 cut(s) 9, 187, 235, 241, 247, 411
BspMI ACCTGC 2 cut(s) 85, 855
BspQI GCTCTTC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 328
BsrBI CCGCTC 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 53, 999
BsrFI RCCGGY 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 83, 610
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 5 cut(s) 278, 726, 744, 760, 963
BssMI GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 480, 579, 1078
Bst6I CTCTTC 2 cut(s) 376, 881
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 53, 423
BstDEI CTNAG 5 cut(s) 303, 396, 426, 618, 666
BstDSI CCRYGG 2 cut(s) 726, 744
BstF5I GGATG 2 cut(s) 251, 754
BstFNI CGCG 1 cut(s) 746
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 8 cut(s) 10, 145, 151, 188, 199, 236, 242, 248
BstMAI GTCTC 4 cut(s) 137, 328, 591, 742
BstMBI GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
BstMWI GCNNNNNNNGC 5 cut(s) 52, 401, 427, 784, 1044
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 963
BstUI CGCG 1 cut(s) 746
BstV1I GCAGC 2 cut(s) 472, 1050
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 7 cut(s) 7, 142, 148, 185, 233, 239, 245
BstYI RGATCY 7 cut(s) 7, 142, 148, 185, 233, 239, 245
BsuRI GGCC 1 cut(s) 1014
BtgI CCRYGG 2 cut(s) 726, 744
BtsCI GGATG 2 cut(s) 251, 754
BtsIMutI CAGTG 2 cut(s) 680, 1087
BveI ACCTGC 2 cut(s) 85, 855
Cac8I GCNNGC 2 cut(s) 53, 423
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 92, 121, 266
Cfr42I CCGCGG 1 cut(s) 747
Csp6I GTAC 1 cut(s) 97
CviAII CATG 4 cut(s) 214, 652, 775, 998
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 5 cut(s) 303, 396, 426, 618, 666
DpnI GATC 8 cut(s) 9, 144, 150, 187, 198, 235, 241, 247
DpnII GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
DraIII CACNNNGTG 1 cut(s) 1101
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 2 cut(s) 376, 881
EarI CTCTTC 2 cut(s) 376, 881
Ecl136II GAGCTC 2 cut(s) 526, 631
Eco130I CCWWGG 1 cut(s) 278
Eco24I GRGCYC 2 cut(s) 528, 633
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 3 cut(s) 92, 121, 266
Eco53kI GAGCTC 2 cut(s) 526, 631
Eco57I CTGAAG 2 cut(s) 159, 576
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 2 cut(s) 526, 631
EcoRI GAATTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 278
EcoT22I ATGCAT 2 cut(s) 945, 999
EcoT38I GRGCYC 2 cut(s) 528, 633
ErhI CCWWGG 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 4 cut(s) 217, 655, 778, 1001
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FatI CATG 4 cut(s) 213, 651, 774, 997
FauI CCCGC 2 cut(s) 60, 751
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 486, 1039, 1090, 1093
FokI GGATG 2 cut(s) 238, 761
FriOI GRGCYC 2 cut(s) 528, 633
Fsp4HI GCNGC 4 cut(s) 486, 1039, 1090, 1093
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 81
GluI GCNGC 4 cut(s) 486, 1039, 1090, 1093
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 1014
HapII CCGG 5 cut(s) 103, 237, 243, 965, 1015
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 217, 655, 778, 1001
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 171, 257, 383, 859
HpaII CCGG 5 cut(s) 103, 237, 243, 965, 1015
HphI GGTGA 1 cut(s) 732
Hpy166II GTNNAC 2 cut(s) 442, 644
Hpy188III TCNNGA 7 cut(s) 146, 237, 243, 333, 413, 529, 592
Hpy8I GTNNAC 2 cut(s) 442, 644
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 4 cut(s) 21, 279, 499, 814
HpyCH4III ACNGT 3 cut(s) 480, 579, 1078
HpyCH4V TGCA 6 cut(s) 550, 680, 778, 850, 943, 997
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 401, 427, 784, 1044
HpyF3I CTNAG 5 cut(s) 303, 396, 426, 618, 666
Hsp92II CATG 4 cut(s) 217, 655, 778, 1001
HspAI GCGC 1 cut(s) 80
Kpn2I TCCGGA 2 cut(s) 236, 242
KspI CCGCGG 1 cut(s) 747
Kzo9I GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
LguI GCTCTTC 1 cut(s) 376
LmnI GCTCC 4 cut(s) 73, 280, 415, 523
Lsp1109I GCAGC 2 cut(s) 472, 1050
LweI GCATC 5 cut(s) 260, 667, 739, 826, 952
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 1017
MalI GATC 8 cut(s) 9, 144, 150, 187, 198, 235, 241, 247
MbiI CCGCTC 1 cut(s) 929
MboI GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
MboII GAAGA 6 cut(s) 152, 203, 363, 868, 897, 1013
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 7 cut(s) 7, 142, 148, 185, 233, 239, 245
MhlI GDGCHC 3 cut(s) 112, 528, 633
MluCI AATT 5 cut(s) 125, 328, 387, 465, 719
MlyI GAGTC 2 cut(s) 392, 853
MmeI TCCRAC 1 cut(s) 95
Mph1103I ATGCAT 2 cut(s) 945, 999
MroI TCCGGA 2 cut(s) 236, 242
MspA1I CMGCKG 3 cut(s) 302, 746, 1041
MspI CCGG 5 cut(s) 103, 237, 243, 965, 1015
MspR9I CCNGG 1 cut(s) 965
MunI CAATTG 1 cut(s) 387
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 5 cut(s) 52, 401, 427, 784, 1044
NciI CCSGG 1 cut(s) 965
NdeII GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
NlaIII CATG 4 cut(s) 217, 655, 778, 1001
NlaIV GGNNCC 6 cut(s) 9, 187, 235, 241, 247, 411
NsiI ATGCAT 2 cut(s) 945, 999
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 527
PaqCI CACCTGC 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 171, 257
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 4 cut(s) 487, 1040, 1091, 1094
PleI GAGTC 2 cut(s) 391, 853
PpsI GAGTC 2 cut(s) 391, 853
PsiI TTATAA 1 cut(s) 756
Psp124BI GAGCTC 2 cut(s) 528, 633
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 6 cut(s) 9, 187, 235, 241, 247, 411
PspPI GGNCC 3 cut(s) 92, 121, 266
PsuI RGATCY 7 cut(s) 7, 142, 148, 185, 233, 239, 245
PsyI GACNNNGTC 1 cut(s) 1076
PvuII CAGCTG 1 cut(s) 1041
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 2 cut(s) 528, 633
SacII CCGCGG 1 cut(s) 747
SalI GTCGAC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 376
SatI GCNGC 4 cut(s) 486, 1039, 1090, 1093
Sau3AI GATC 8 cut(s) 7, 142, 148, 185, 196, 233, 239, 245
Sau96I GGNCC 3 cut(s) 92, 121, 266
SchI GAGTC 2 cut(s) 392, 853
ScrFI CCNGG 1 cut(s) 965
SduI GDGCHC 3 cut(s) 112, 528, 633
SfaNI GCATC 5 cut(s) 260, 667, 739, 826, 952
Sfr274I CTCGAG 1 cut(s) 527
Sfr303I CCGCGG 1 cut(s) 747
SfuI TTCGAA 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 747
SinI GGWCC 3 cut(s) 92, 121, 266
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 527, 632
SmoI CTYRAG 2 cut(s) 527, 632
Sse9I AATT 5 cut(s) 125, 328, 387, 465, 719
SsiI CCGC 7 cut(s) 53, 249, 300, 317, 744, 746, 927
SspMI CTAG 1 cut(s) 279
SstI GAGCTC 2 cut(s) 528, 633
StyD4I CCNGG 1 cut(s) 963
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 3 cut(s) 480, 579, 1078
TaqI TCGA 8 cut(s) 174, 332, 340, 374, 441, 475, 494, 528
TasI AATT 5 cut(s) 125, 328, 387, 465, 719
TfiI GAWTC 2 cut(s) 171, 257
TscAI CASTG 2 cut(s) 687, 1087
TseI GCWGC 4 cut(s) 485, 1038, 1089, 1092
TspDTI ATGAA 2 cut(s) 860, 1014
TspGWI ACGGA 3 cut(s) 84, 119, 349
TspRI CASTG 2 cut(s) 687, 1087
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 92, 121, 266
XapI RAATTY 2 cut(s) 328, 719
XceI RCATGY 1 cut(s) 778
XhoI CTCGAG 1 cut(s) 527
XmaJI CCTAGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 2 cut(s) 945, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.