Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009591

Physical Location & Seq

Genomic Coordinates Forward (+)

43867129 .. 43869435

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGCTTTTGCTTCCAAGGAGTTTGAAGCTCTGGATGAAGAGTGTGTTGAGGAGCAAATGCCTTTGGTACAGGAAGTAGTTGTCACTGCTACCCCTACTATGAATTTTGAGAATGTGCAACAGGTTAATTTGTCGAATGCAGAAACTCAAGAGAAGCAAGTTTCAGTAAGGAGGATCTACATAGGGTGGAGAAACGAGCACCCCTTCGACGACCCATCCGCCAGCTTCGAGGAGCTCGGCTCTGAAGACAACCTCTTCTGCACCTACATGGACATTGAGAAGCTCGGATCCAAGATTGAGGATGGATCCTCCGCCCAGAAGACCGAGAATGCCTCCGAGTTGACATCACAGGCAGAGACGGGCGCCGGCGAAGGGAGCAGCGCCAGGTTGAGGCACCGACATAGCAACGAACGGCTCTTTGGAATCGATAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

4.55

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06850 AT1G06850 AT2G40620
fragaria_vesca	FvH4_7g25870
malus_domestica	MD01G1167000.v1.1 MD07G1233200.v1.1
prunus_persica	Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1
pyrus_communis	pycom01g18010 pycom07g21100
rosa_chinensis	RchiOBHm_Chr1g0372151
rosa_laevigata	RLG00000018975 RLG00000026918
rosa_multiflora	Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285180
rosa_rugosa	Rorug01G0370000
rosa_samantha	Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900
rosa_wichuraiana	Rw1G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	365, 396
AciI	CCGC	2 cut(s)	222, 315
AclWI	GGATC	5 cut(s)	185, 285, 298, 303, 316
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	375, 393
AgsI	TTSAA	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	4 cut(s)	32, 228, 238, 286
AluI	AGCT	4 cut(s)	32, 228, 238, 286
Alw21I	GWGCWC	2 cut(s)	204, 240
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	5 cut(s)	185, 285, 298, 303, 316
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	368, 386
BamHI	GGATCC	2 cut(s)	290, 308
BanI	GGYRCC	2 cut(s)	365, 396
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	255, 329
Bbv12I	GWGCWC	2 cut(s)	204, 240
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	2 cut(s)	226, 299
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	353
BfoI	RGCGCY	2 cut(s)	369, 387
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	388
BmiI	GGNNCC	4 cut(s)	292, 310, 367, 398
BmrFI	CCNGG	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	255, 329
BplI	GAGNNNNNCTC	4 cut(s)	227, 259, 320, 352
BpuEI	CTTGAG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 393
Bse118I	RCCGGY	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	43, 218, 310
BseLI	CCNNNNNNNGG	2 cut(s)	375, 393
BseRI	GAGGAG	2 cut(s)	68, 248
BseXI	GCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	247
BshNI	GGYRCC	2 cut(s)	365, 396
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	204, 240
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	375, 393
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmI	GAATGC	2 cut(s)	145, 337
Bsp1286I	GDGCHC	2 cut(s)	204, 240
Bsp143I	GATC	3 cut(s)	177, 290, 308
BspACI	CCGC	2 cut(s)	222, 315
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	292, 310, 367, 398
BspPI	GGATC	5 cut(s)	185, 285, 298, 303, 316
BspT107I	GGYRCC	2 cut(s)	365, 396
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	177, 290, 308
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	36, 263
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	226, 370
BstF5I	GGATG	3 cut(s)	43, 218, 310
BstH2I	RGCGCY	2 cut(s)	369, 387
BstHHI	GCGC	2 cut(s)	368, 386
BstKTI	GATC	3 cut(s)	180, 293, 311
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	177, 290, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	2 cut(s)	255, 329
BstX2I	RGATCY	3 cut(s)	177, 290, 308
BstYI	RGATCY	3 cut(s)	177, 290, 308
Bsu15I	ATCGAT	1 cut(s)	429
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	43, 218, 310
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	226, 370
CfoI	GCGC	2 cut(s)	368, 386
Cfr10I	RCCGGY	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	8, 32, 228, 238, 243, 286, 418
CviKI_1	RGCY	7 cut(s)	8, 32, 228, 238, 243, 286, 418
CviQI	GTAC	1 cut(s)	71
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	3 cut(s)	179, 292, 310
DpnII	GATC	3 cut(s)	177, 290, 308
Eam1104I	CTCTTC	2 cut(s)	36, 263
EarI	CTCTTC	2 cut(s)	36, 263
EciI	GGCGGA	2 cut(s)	211, 304
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	104, 185, 272, 405
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	3 cut(s)	50, 205, 317
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	382
GlaI	GCGC	2 cut(s)	367, 385
GluI	GCNGC	1 cut(s)	382
HaeII	RGCGCY	2 cut(s)	369, 387
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	2 cut(s)	368, 386
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	366, 384
HinP1I	GCGC	2 cut(s)	366, 384
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	247, 290, 340
Hpy188III	TCNNGA	2 cut(s)	35, 152
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	217, 368
HpyCH4V	TGCA	3 cut(s)	121, 143, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	366, 384
KasI	GGCGCC	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	177, 290, 308
LmnI	GCTCC	3 cut(s)	55, 235, 378
LpnPI	CCDG	9 cut(s)	20, 59, 110, 238, 332, 338, 373, 382, 400
Lsp1109I	GCAGC	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	179, 292, 310
MboI	GATC	3 cut(s)	177, 290, 308
MboII	GAAGA	4 cut(s)	53, 250, 260, 334
MflI	RGATCY	3 cut(s)	177, 290, 308
MhlI	GDGCHC	2 cut(s)	204, 240
MluCI	AATT	2 cut(s)	106, 130
Mly113I	GGCGCC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	46, 168, 226, 266, 295, 322, 346, 387
MreI	CGCCGGCG	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	368
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	388
Mva1269I	GAATGC	2 cut(s)	145, 337
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	378
NaeI	GCCGGC	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	366
NdeII	GATC	3 cut(s)	177, 290, 308
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	4 cut(s)	292, 310, 367, 398
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	85
PctI	GAATGC	2 cut(s)	145, 337
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	383
PluTI	GGCGCC	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	4 cut(s)	292, 310, 367, 398
PsuI	RGATCY	3 cut(s)	177, 290, 308
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	3 cut(s)	177, 290, 308
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	204, 240
SetI	ASST	8 cut(s)	34, 129, 230, 240, 258, 269, 288, 392
SfoI	GGCGCC	1 cut(s)	367
SgrAI	CRCCGGYG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	106, 130
SsiI	CCGC	2 cut(s)	222, 315
SspDI	GGCGCC	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	4 cut(s)	137, 210, 231, 429
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	106, 130
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	54, 119
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.