transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06850 AT1G06850 AT2G40620 |
| fragaria_vesca | FvH4_7g25870 |
| malus_domestica | MD01G1167000.v1.1 MD07G1233200.v1.1 |
| prunus_persica | Prupe.2G263700_v2.0.a1 Prupe.6G181900_v2.0.a1 |
| pyrus_communis | pycom01g18010 pycom07g21100 |
| rosa_chinensis | RchiOBHm_Chr1g0372151 |
| rosa_laevigata | RLG00000018975 RLG00000026918 |
| rosa_multiflora | Rmu_co8109412.1_g000001 Rmu_sc0001755.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00285180 |
| rosa_rugosa | Rorug01G0370000 |
| rosa_samantha | Rh1AG378500 Rh1BG341800 Rh1CG355200 Rh1DG372900 |
| rosa_wichuraiana | Rw1G033300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 80 |
| AccB1I | GGYRCC | 2 cut(s) | 40, 381 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 854 |
| AccII | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| AccIII | TCCGGA | 2 cut(s) | 49, 153 |
| AcoI | YGGCCR | 2 cut(s) | 301, 994 |
| AcuI | CTGAAG | 2 cut(s) | 749, 1071 |
| AcyI | GRCGYC | 3 cut(s) | 41, 77, 338 |
| AfaI | GTAC | 1 cut(s) | 791 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 25, 142, 194, 360, 405, 854, 938, 1003 |
| AflII | CTTAAG | 1 cut(s) | 665 |
| AgsI | TTSAA | 3 cut(s) | 563, 584, 990 |
| AjnI | CCWGG | 3 cut(s) | 168, 180, 1002 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1073 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Aor13HI | TCCGGA | 2 cut(s) | 49, 153 |
| ApeKI | GCWGC | 3 cut(s) | 393, 518, 979 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 497, 529 |
| AspLEI | GCGC | 4 cut(s) | 43, 65, 134, 727 |
| AspS9I | GGNCC | 8 cut(s) | 88, 145, 184, 197, 468, 541, 857, 1055 |
| AsuC2I | CCSGG | 3 cut(s) | 38, 544, 840 |
| AvaII | GGWCC | 3 cut(s) | 88, 145, 184 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 875, 908 |
| BamHI | GGATCC | 4 cut(s) | 28, 156, 272, 290 |
| BanI | GGYRCC | 2 cut(s) | 40, 381 |
| BanII | GRGCYC | 1 cut(s) | 222 |
| BbsI | GAAGAC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BbvI | GCAGC | 3 cut(s) | 405, 505, 991 |
| BccI | CCATC | 2 cut(s) | 208, 281 |
| BceAI | ACGGC | 2 cut(s) | 211, 455 |
| BciT130I | CCWGG | 3 cut(s) | 170, 182, 1004 |
| BcnI | CCSGG | 3 cut(s) | 38, 544, 840 |
| BfaI | CTAG | 3 cut(s) | 105, 522, 1040 |
| BfoI | RGCGCY | 1 cut(s) | 44 |
| BfrI | CTTAAG | 1 cut(s) | 665 |
| BisI | GCNGC | 8 cut(s) | 115, 130, 301, 325, 336, 394, 519, 980 |
| BlpI | GCTNAGC | 2 cut(s) | 459, 609 |
| BlsI | GCNGC | 8 cut(s) | 116, 131, 302, 326, 337, 395, 520, 981 |
| Bme1390I | CCNGG | 6 cut(s) | 38, 170, 182, 544, 840, 1004 |
| Bme18I | GGWCC | 3 cut(s) | 88, 145, 184 |
| BmgT120I | GGNCC | 8 cut(s) | 88, 145, 184, 197, 468, 541, 857, 1055 |
| BmrFI | CCNGG | 6 cut(s) | 38, 170, 182, 544, 840, 1004 |
| BmrI | ACTGGG | 2 cut(s) | 130, 946 |
| BmsI | GCATC | 5 cut(s) | 700, 712, 792, 814, 953 |
| BmuI | ACTGGG | 2 cut(s) | 130, 946 |
| BpiI | GAAGAC | 1 cut(s) | 237 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 209, 241 |
| BpmI | CTGGAG | 3 cut(s) | 164, 783, 1092 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 459, 609 |
| BpuEI | CTTGAG | 3 cut(s) | 302, 734, 761 |
| BpuMI | CCSGG | 3 cut(s) | 38, 544, 840 |
| Bsa29I | ATCGAT | 1 cut(s) | 419 |
| BsaHI | GRCGYC | 3 cut(s) | 41, 77, 338 |
| BsaJI | CCNNGG | 6 cut(s) | 112, 377, 399, 438, 796, 1003 |
| BsaWI | WCCGGW | 3 cut(s) | 25, 49, 153 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 25, 142, 194, 360, 405, 854, 938, 1003 |
| Bse118I | RCCGGY | 3 cut(s) | 320, 353, 384 |
| Bse1I | ACTGG | 5 cut(s) | 136, 766, 904, 952, 1075 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| BseAI | TCCGGA | 2 cut(s) | 49, 153 |
| BseBI | CCWGG | 3 cut(s) | 170, 182, 1004 |
| BseCI | ATCGAT | 1 cut(s) | 419 |
| BseDI | CCNNGG | 6 cut(s) | 112, 377, 399, 438, 796, 1003 |
| BseGI | GGATG | 3 cut(s) | 200, 292, 807 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 25, 142, 194, 360, 405, 854, 938, 1003 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 7 cut(s) | 438, 450, 623, 642, 713, 884, 981 |
| BseNI | ACTGG | 5 cut(s) | 136, 766, 904, 952, 1075 |
| BseRI | GAGGAG | 2 cut(s) | 230, 912 |
| BseXI | GCAGC | 3 cut(s) | 405, 505, 991 |
| BsgI | GTGCAG | 1 cut(s) | 229 |
| Bsh1236I | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| BshNI | GGYRCC | 2 cut(s) | 40, 381 |
| BshVI | ATCGAT | 1 cut(s) | 419 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 25, 142, 194, 360, 405, 854, 938, 1003 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp13I | TCCGGA | 2 cut(s) | 49, 153 |
| Bsp143I | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 459, 609 |
| Bsp19I | CCATGG | 2 cut(s) | 399, 438 |
| BspCNI | CTCAG | 7 cut(s) | 439, 451, 622, 643, 712, 883, 980 |
| BspDI | ATCGAT | 1 cut(s) | 419 |
| BspEI | TCCGGA | 2 cut(s) | 49, 153 |
| BspFNI | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| BspT107I | GGYRCC | 2 cut(s) | 40, 381 |
| BspTI | CTTAAG | 1 cut(s) | 665 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrFI | RCCGGY | 3 cut(s) | 320, 353, 384 |
| BsrI | ACTGG | 5 cut(s) | 136, 766, 904, 952, 1075 |
| BssAI | RCCGGY | 3 cut(s) | 320, 353, 384 |
| BssECI | CCNNGG | 6 cut(s) | 112, 377, 399, 438, 796, 1003 |
| BssMI | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| BssNI | GRCGYC | 3 cut(s) | 41, 77, 338 |
| BssT1I | CCWWGG | 3 cut(s) | 399, 438, 796 |
| Bst2UI | CCWGG | 3 cut(s) | 170, 182, 1004 |
| Bst4CI | ACNGT | 2 cut(s) | 852, 891 |
| Bst6I | CTCTTC | 2 cut(s) | 61, 245 |
| BstACI | GRCGYC | 3 cut(s) | 41, 77, 338 |
| BstAFI | CTTAAG | 1 cut(s) | 665 |
| BstC8I | GCNNGC | 8 cut(s) | 322, 345, 355, 456, 486, 681, 918, 964 |
| BstDEI | CTNAG | 8 cut(s) | 429, 447, 459, 609, 651, 699, 870, 967 |
| BstDSI | CCRYGG | 3 cut(s) | 112, 399, 438 |
| BstF5I | GGATG | 3 cut(s) | 200, 292, 807 |
| BstFNI | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| BstH2I | RGCGCY | 1 cut(s) | 44 |
| BstHHI | GCGC | 4 cut(s) | 43, 65, 134, 727 |
| BstKTI | GATC | 7 cut(s) | 10, 31, 159, 175, 275, 293, 478 |
| BstMBI | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 114, 344, 363, 434, 460 |
| BstNI | CCWGG | 3 cut(s) | 170, 182, 1004 |
| BstNSI | RCATGY | 1 cut(s) | 962 |
| BstSCI | CCNGG | 6 cut(s) | 36, 168, 180, 542, 838, 1002 |
| BstUI | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| BstV1I | GCAGC | 3 cut(s) | 405, 505, 991 |
| BstV2I | GAAGAC | 1 cut(s) | 237 |
| BstX2I | RGATCY | 6 cut(s) | 7, 28, 156, 172, 272, 290 |
| BstYI | RGATCY | 6 cut(s) | 7, 28, 156, 172, 272, 290 |
| Bsu15I | ATCGAT | 1 cut(s) | 419 |
| BsuTUI | ATCGAT | 1 cut(s) | 419 |
| BtgI | CCRYGG | 3 cut(s) | 112, 399, 438 |
| BtgZI | GCGATG | 1 cut(s) | 723 |
| BtsCI | GGATG | 3 cut(s) | 200, 292, 807 |
| BtsIMutI | CAGTG | 1 cut(s) | 780 |
| Cac8I | GCNNGC | 8 cut(s) | 322, 345, 355, 456, 486, 681, 918, 964 |
| CfoI | GCGC | 4 cut(s) | 43, 65, 134, 727 |
| Cfr10I | RCCGGY | 3 cut(s) | 320, 353, 384 |
| Cfr13I | GGNCC | 8 cut(s) | 88, 145, 184, 197, 468, 541, 857, 1055 |
| Cfr42I | CCGCGG | 1 cut(s) | 115 |
| ClaI | ATCGAT | 1 cut(s) | 419 |
| CseI | GACGC | 1 cut(s) | 327 |
| Csp6I | GTAC | 1 cut(s) | 790 |
| CviAII | CATG | 4 cut(s) | 253, 400, 439, 959 |
| CviQI | GTAC | 1 cut(s) | 790 |
| DdeI | CTNAG | 8 cut(s) | 429, 447, 459, 609, 651, 699, 870, 967 |
| DinI | GGCGCC | 1 cut(s) | 42 |
| DpnI | GATC | 7 cut(s) | 9, 30, 158, 174, 274, 292, 477 |
| DpnII | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| EaeI | YGGCCR | 2 cut(s) | 301, 994 |
| Eam1104I | CTCTTC | 2 cut(s) | 61, 245 |
| EarI | CTCTTC | 2 cut(s) | 61, 245 |
| EciI | GGCGGA | 2 cut(s) | 342, 362 |
| Ecl136II | GAGCTC | 1 cut(s) | 220 |
| Eco130I | CCWWGG | 3 cut(s) | 399, 438, 796 |
| Eco24I | GRGCYC | 1 cut(s) | 222 |
| Eco47I | GGWCC | 3 cut(s) | 88, 145, 184 |
| Eco53kI | GAGCTC | 1 cut(s) | 220 |
| Eco57I | CTGAAG | 2 cut(s) | 749, 1071 |
| EcoICRI | GAGCTC | 1 cut(s) | 220 |
| EcoO109I | RGGNCCY | 3 cut(s) | 88, 184, 1055 |
| EcoRII | CCWGG | 3 cut(s) | 168, 180, 1002 |
| EcoT14I | CCWWGG | 3 cut(s) | 399, 438, 796 |
| EcoT22I | ATGCAT | 1 cut(s) | 807 |
| EcoT38I | GRGCYC | 1 cut(s) | 222 |
| EgeI | GGCGCC | 1 cut(s) | 42 |
| EheI | GGCGCC | 1 cut(s) | 42 |
| ErhI | CCWWGG | 3 cut(s) | 399, 438, 796 |
| FaeI | CATG | 4 cut(s) | 256, 403, 442, 962 |
| FatI | CATG | 4 cut(s) | 252, 399, 438, 958 |
| FauI | CCCGC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 8 cut(s) | 115, 130, 301, 325, 336, 394, 519, 980 |
| FokI | GGATG | 3 cut(s) | 187, 299, 814 |
| FriOI | GRGCYC | 1 cut(s) | 222 |
| Fsp4HI | GCNGC | 8 cut(s) | 115, 130, 301, 325, 336, 394, 519, 980 |
| FspBI | CTAG | 3 cut(s) | 105, 522, 1040 |
| GlaI | GCGC | 4 cut(s) | 42, 64, 133, 726 |
| GluI | GCNGC | 8 cut(s) | 115, 130, 301, 325, 336, 394, 519, 980 |
| GsuI | CTGGAG | 3 cut(s) | 164, 783, 1092 |
| HaeII | RGCGCY | 1 cut(s) | 44 |
| HgaI | GACGC | 1 cut(s) | 327 |
| HhaI | GCGC | 4 cut(s) | 43, 65, 134, 727 |
| Hin1I | GRCGYC | 3 cut(s) | 41, 77, 338 |
| Hin1II | CATG | 4 cut(s) | 256, 403, 442, 962 |
| Hin6I | GCGC | 4 cut(s) | 41, 63, 132, 725 |
| HinP1I | GCGC | 4 cut(s) | 41, 63, 132, 725 |
| HincII | GTYRAC | 1 cut(s) | 845 |
| HindII | GTYRAC | 1 cut(s) | 845 |
| HinfI | GANTC | 8 cut(s) | 53, 416, 670, 785, 866, 986, 999, 1089 |
| Hpy166II | GTNNAC | 1 cut(s) | 845 |
| Hpy188III | TCNNGA | 7 cut(s) | 50, 86, 154, 262, 446, 625, 751 |
| Hpy8I | GTNNAC | 1 cut(s) | 845 |
| Hpy99I | CGWCG | 7 cut(s) | 79, 82, 167, 197, 343, 476, 640 |
| HpyAV | CCTTC | 5 cut(s) | 199, 427, 532, 841, 1046 |
| HpyCH4III | ACNGT | 2 cut(s) | 852, 891 |
| HpyCH4IV | ACGT | 1 cut(s) | 77 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 246, 679, 758, 805, 916, 944, 979 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 114, 344, 363, 434, 460 |
| HpyF3I | CTNAG | 8 cut(s) | 429, 447, 459, 609, 651, 699, 870, 967 |
| HpySE526I | ACGT | 1 cut(s) | 77 |
| Hsp92I | GRCGYC | 3 cut(s) | 41, 77, 338 |
| Hsp92II | CATG | 4 cut(s) | 256, 403, 442, 962 |
| HspAI | GCGC | 4 cut(s) | 41, 63, 132, 725 |
| KasI | GGCGCC | 1 cut(s) | 40 |
| Kpn2I | TCCGGA | 2 cut(s) | 49, 153 |
| KroI | GCCGGC | 2 cut(s) | 320, 353 |
| KroNI | GCCGGC | 2 cut(s) | 322, 355 |
| KspI | CCGCGG | 1 cut(s) | 115 |
| Kzo9I | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| LmnI | GCTCC | 8 cut(s) | 122, 183, 217, 230, 363, 401, 448, 925 |
| Lsp1109I | GCAGC | 3 cut(s) | 405, 505, 991 |
| LweI | GCATC | 5 cut(s) | 700, 712, 792, 814, 953 |
| MaeI | CTAG | 3 cut(s) | 105, 522, 1040 |
| MaeII | ACGT | 1 cut(s) | 77 |
| MaeIII | GTNAC | 2 cut(s) | 702, 954 |
| MalI | GATC | 7 cut(s) | 9, 30, 158, 174, 274, 292, 477 |
| MboI | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| MboII | GAAGA | 5 cut(s) | 48, 232, 242, 639, 742 |
| MfeI | CAATTG | 1 cut(s) | 990 |
| MflI | RGATCY | 6 cut(s) | 7, 28, 156, 172, 272, 290 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MluCI | AATT | 1 cut(s) | 990 |
| Mly113I | GGCGCC | 1 cut(s) | 41 |
| MlyI | GAGTC | 1 cut(s) | 47 |
| MmeI | TCCRAC | 3 cut(s) | 120, 228, 393 |
| Mph1103I | ATGCAT | 1 cut(s) | 807 |
| MroI | TCCGGA | 2 cut(s) | 49, 153 |
| MroNI | GCCGGC | 2 cut(s) | 320, 353 |
| MseI | TTAA | 2 cut(s) | 666, 773 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| MspA1I | CMGCKG | 1 cut(s) | 114 |
| MspCI | CTTAAG | 1 cut(s) | 665 |
| MspR9I | CCNGG | 6 cut(s) | 38, 170, 182, 544, 840, 1004 |
| MunI | CAATTG | 1 cut(s) | 990 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| MvaI | CCWGG | 3 cut(s) | 170, 182, 1004 |
| MvnI | CGCG | 5 cut(s) | 63, 114, 132, 708, 864 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 114, 344, 363, 434, 460 |
| NaeI | GCCGGC | 2 cut(s) | 322, 355 |
| NarI | GGCGCC | 1 cut(s) | 41 |
| NciI | CCSGG | 3 cut(s) | 38, 544, 840 |
| NcoI | CCATGG | 2 cut(s) | 399, 438 |
| NdeII | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| NgoMIV | GCCGGC | 2 cut(s) | 320, 353 |
| NlaIII | CATG | 4 cut(s) | 256, 403, 442, 962 |
| NmeAIII | GCCGAG | 2 cut(s) | 201, 402 |
| NmuCI | GTSAC | 1 cut(s) | 954 |
| NsiI | ATGCAT | 1 cut(s) | 807 |
| NspI | RCATGY | 1 cut(s) | 962 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 416 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PdiI | GCCGGC | 2 cut(s) | 322, 355 |
| PfeI | GAWTC | 7 cut(s) | 416, 670, 785, 866, 986, 999, 1089 |
| PflFI | GACNNNGTC | 1 cut(s) | 76 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 854 |
| PfoI | TCCNGGA | 1 cut(s) | 180 |
| PkrI | GCNGC | 8 cut(s) | 116, 131, 302, 326, 337, 395, 520, 981 |
| PleI | GAGTC | 1 cut(s) | 47 |
| PluTI | GGCGCC | 1 cut(s) | 44 |
| PpsI | GAGTC | 1 cut(s) | 47 |
| PpuMI | RGGWCCY | 2 cut(s) | 88, 184 |
| Psp124BI | GAGCTC | 1 cut(s) | 222 |
| Psp5II | RGGWCCY | 2 cut(s) | 88, 184 |
| Psp6I | CCWGG | 3 cut(s) | 168, 180, 1002 |
| PspGI | CCWGG | 3 cut(s) | 168, 180, 1002 |
| PspPI | GGNCC | 8 cut(s) | 88, 145, 184, 197, 468, 541, 857, 1055 |
| PspPPI | RGGWCCY | 2 cut(s) | 88, 184 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 884, 916 |
| PsuI | RGATCY | 6 cut(s) | 7, 28, 156, 172, 272, 290 |
| PsyI | GACNNNGTC | 1 cut(s) | 76 |
| RsaI | GTAC | 1 cut(s) | 791 |
| RsaNI | GTAC | 1 cut(s) | 790 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SacI | GAGCTC | 1 cut(s) | 222 |
| SacII | CCGCGG | 1 cut(s) | 115 |
| SaqAI | TTAA | 2 cut(s) | 666, 773 |
| SatI | GCNGC | 8 cut(s) | 115, 130, 301, 325, 336, 394, 519, 980 |
| Sau3AI | GATC | 7 cut(s) | 7, 28, 156, 172, 272, 290, 475 |
| Sau96I | GGNCC | 8 cut(s) | 88, 145, 184, 197, 468, 541, 857, 1055 |
| SchI | GAGTC | 1 cut(s) | 47 |
| ScrFI | CCNGG | 6 cut(s) | 38, 170, 182, 544, 840, 1004 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SfaNI | GCATC | 5 cut(s) | 700, 712, 792, 814, 953 |
| SfoI | GGCGCC | 1 cut(s) | 42 |
| Sfr303I | CCGCGG | 1 cut(s) | 115 |
| SgrBI | CCGCGG | 1 cut(s) | 115 |
| SinI | GGWCC | 3 cut(s) | 88, 145, 184 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| SmlI | CTYRAG | 4 cut(s) | 281, 665, 740, 749 |
| SmoI | CTYRAG | 4 cut(s) | 281, 665, 740, 749 |
| Sse9I | AATT | 1 cut(s) | 990 |
| SspDI | GGCGCC | 1 cut(s) | 40 |
| SspMI | CTAG | 3 cut(s) | 105, 522, 1040 |
| SstI | GAGCTC | 1 cut(s) | 222 |
| StyD4I | CCNGG | 6 cut(s) | 36, 168, 180, 542, 838, 1002 |
| StyI | CCWWGG | 3 cut(s) | 399, 438, 796 |
| TaaI | ACNGT | 2 cut(s) | 852, 891 |
| TaiI | ACGT | 1 cut(s) | 80 |
| TaqI | TCGA | 6 cut(s) | 162, 192, 213, 261, 419, 474 |
| TasI | AATT | 1 cut(s) | 990 |
| TauI | GCSGC | 5 cut(s) | 117, 132, 303, 327, 338 |
| TfiI | GAWTC | 7 cut(s) | 416, 670, 785, 866, 986, 999, 1089 |
| Tru1I | TTAA | 2 cut(s) | 666, 773 |
| Tru9I | TTAA | 2 cut(s) | 666, 773 |
| TscAI | CASTG | 1 cut(s) | 787 |
| TseFI | GTSAC | 1 cut(s) | 954 |
| TseI | GCWGC | 3 cut(s) | 393, 518, 979 |
| Tsp45I | GTSAC | 1 cut(s) | 954 |
| TspRI | CASTG | 1 cut(s) | 787 |
| Tth111I | GACNNNGTC | 1 cut(s) | 76 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 854 |
| Vha464I | CTTAAG | 1 cut(s) | 665 |
| VpaK11BI | GGWCC | 3 cut(s) | 88, 145, 184 |
| XceI | RCATGY | 1 cut(s) | 962 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 496 |
| XspI | CTAG | 3 cut(s) | 105, 522, 1040 |
| ZraI | GACGTC | 1 cut(s) | 78 |
| Zsp2I | ATGCAT | 1 cut(s) | 807 |