Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2191679 .. 2193836

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGACCAACGAACCCGAGCACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGACACCGGAGCTCAGGTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGAGGAAGACGAAGATGCCGTCCTTGATCTGAAATCGAAGCTTTATCGATTCGATAAGGATGCGAATCAGTGGAAGGAGAGAGGAGCTGGTACTGTGAAGTTCTTAAAGCATAAGAACACTGGGAAGATTCGTCTCGTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGTTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTGTGTGGCACGCTCGTGACTTTGCTGATGGTGAACTCAAGGATGAGCTTTTCTGTATCCGATTTGCTTCTATTGAGAATTGCAAAACATTTATGCAAAAGTTCAAGGAAGTTGCTGAGTCTGAAGAAGAGAAAGAAGAGAGCAAAGATGCCGCTGACACTGCTGGCCTTCTTGAGAAATTGACTGTGGAAGAGACAAAAACGGAGGAGAAAACCGAAGCGAAAGCTGTGGAGACGGCAAAGACTGAAGTGAAAGCAGAAGAAAAGAAAGAGAGCGAGGCAGAGAAATCTGGTGAAGCAAAGAAAACAGAAGAAAGTGGTCCCTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

4.91

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	39 - 156	5.8e-39	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	498, 621
AfaI	GTAC	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	286, 460
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	6 cut(s)	53, 77, 166, 212, 403, 581
AluI	AGCT	6 cut(s)	53, 77, 166, 212, 403, 581
Alw21I	GWGCWC	3 cut(s)	24, 30, 79
Alw26I	GTCTC	4 cut(s)	27, 263, 542, 581
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	45, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	398, 659
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	2 cut(s)	23, 369
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	3 cut(s)	24, 30, 79
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	3 cut(s)	98, 128, 606
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	27, 263, 542, 581
BfuI	GTATCC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	676
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	130, 175, 493
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	3 cut(s)	122, 377, 548
Bsa29I	ATCGAT	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	172
BseGI	GGATG	3 cut(s)	67, 190, 403
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	92, 462
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	3 cut(s)	119, 222, 575
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	47, 522
BshVI	ATCGAT	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	3 cut(s)	24, 30, 79
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	48, 72, 123
BslFI	GGGAC	1 cut(s)	660
BsmAI	GTCTC	4 cut(s)	27, 263, 542, 581
BsmBI	CGTCTC	3 cut(s)	27, 263, 581
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	2 cut(s)	47, 522
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	3 cut(s)	24, 30, 79
Bsp143I	GATC	3 cut(s)	90, 151, 288
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	47, 522
BspCNI	CTCAG	2 cut(s)	91, 463
BspDI	ATCGAT	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	3 cut(s)	90, 151, 288
BssSI	CACGAG	2 cut(s)	23, 369
Bst2BI	CACGAG	2 cut(s)	23, 369
Bst4CI	ACNGT	2 cut(s)	220, 541
Bst6I	CTCTTC	4 cut(s)	36, 477, 486, 540
BstC8I	GCNNGC	2 cut(s)	366, 520
BstDEI	CTNAG	2 cut(s)	78, 471
BstF5I	GGATG	3 cut(s)	67, 190, 403
BstKTI	GATC	3 cut(s)	93, 154, 291
BstMAI	GTCTC	4 cut(s)	27, 263, 542, 581
BstMBI	GATC	3 cut(s)	90, 151, 288
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 515
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	2 cut(s)	47, 522
BsuTUI	ATCGAT	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	67, 190, 403
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	200, 243, 513
Cac8I	GCNNGC	2 cut(s)	366, 520
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	674
ClaI	ATCGAT	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	319, 354
CviJI	RGCY	9 cut(s)	47, 53, 77, 100, 166, 212, 403, 522, 581
CviKI_1	RGCY	9 cut(s)	47, 53, 77, 100, 166, 212, 403, 522, 581
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	78, 471
DpnI	GATC	3 cut(s)	92, 153, 290
DpnII	GATC	3 cut(s)	90, 151, 288
Eam1104I	CTCTTC	4 cut(s)	36, 477, 486, 540
EarI	CTCTTC	4 cut(s)	36, 477, 486, 540
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	674
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	498, 621
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
Esp3I	CGTCTC	3 cut(s)	27, 263, 581
FaeI	CATG	2 cut(s)	322, 357
FaiI	YATR	6 cut(s)	237, 266, 320, 355, 449, 685
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	2 cut(s)	318, 353
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	3 cut(s)	74, 197, 410
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	47, 522
HapII	CCGG	3 cut(s)	48, 72, 123
Hin1II	CATG	2 cut(s)	322, 357
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	4 cut(s)	174, 190, 253, 473
HpaII	CCGG	3 cut(s)	48, 72, 123
HphI	GGTGA	2 cut(s)	398, 659
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	90, 156, 416, 478
Hpy188III	TCNNGA	3 cut(s)	329, 371, 527
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	193, 533
HpyCH4III	ACNGT	2 cut(s)	220, 541
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	438, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 515
HpyF3I	CTNAG	2 cut(s)	78, 471
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	322, 357
Kzo9I	GATC	3 cut(s)	90, 151, 288
LmnI	GCTCC	4 cut(s)	50, 74, 91, 209
LpnPI	CCDG	9 cut(s)	61, 65, 85, 136, 198, 231, 314, 504, 630
LweI	GCATC	3 cut(s)	130, 175, 493
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	115, 371
MalI	GATC	3 cut(s)	92, 153, 290
MboI	GATC	3 cut(s)	90, 151, 288
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	3 cut(s)	24, 30, 79
MluCI	AATT	2 cut(s)	433, 533
MlyI	GAGTC	1 cut(s)	482
MseI	TTAA	2 cut(s)	230, 309
MslI	CAYNNNNRTG	2 cut(s)	358, 369
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	48, 72, 123
MwoI	GCNNNNNNNGC	2 cut(s)	83, 515
NdeII	GATC	3 cut(s)	90, 151, 288
NlaIII	CATG	2 cut(s)	322, 357
NlaIV	GGNNCC	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	115, 371
OliI	CACNNNNGTG	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 141
PfeI	GAWTC	3 cut(s)	174, 190, 253
PkrI	GCNGC	1 cut(s)	508
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	288
PvuI	CGATCG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	358, 369
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	230, 309
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	90, 151, 288
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	3 cut(s)	24, 30, 79
SetI	ASST	9 cut(s)	55, 79, 84, 111, 168, 214, 339, 405, 583
SfaNI	GCATC	3 cut(s)	130, 175, 493
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	2 cut(s)	358, 369
SmlI	CTYRAG	3 cut(s)	101, 392, 527
SmoI	CTYRAG	3 cut(s)	101, 392, 527
Sse9I	AATT	2 cut(s)	433, 533
SsiI	CCGC	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	220, 541
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	161, 172, 177
TasI	AATT	2 cut(s)	433, 533
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	3 cut(s)	174, 190, 253
Tru1I	TTAA	2 cut(s)	230, 309
Tru9I	TTAA	2 cut(s)	230, 309
TscAI	CASTG	3 cut(s)	200, 250, 520
TseFI	GTSAC	2 cut(s)	115, 371
Tsp45I	GTSAC	2 cut(s)	115, 371
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	3 cut(s)	200, 250, 520
VpaK11BI	GGWCC	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.