Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Forward (+)

77127609 .. 77130063

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG490900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGACCGCCGACGCCGAGCACAGAGAAGAAGAGGAGCCCCTCGCCGGAGATGACGAGGACACCGGAGCCCAGGTCGCCCCGATCGTCAGGCTCGAGGAGGTCGCCGTCACCACCGGTGAAGAGAACGAAGATGCTGTCCTCGATCTGAAAGCTAAGCTGTACCGATTCGATAAGGATGGGAATCAGTGGAAAGAGCGAGGTGCTGGCACTGTGAAGCTTCTGAAGCACAAGGAGTCCGGCAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTAAAGATCTGCGCCAATCATCTTGTTCTGCCTAAGATGACGGTTCAGGAGCACGCCGGGAATGAGAAGTCATGTGTGTGGCACGCTACTGACTTTGCTGATGGTGAATTGAAGGAAGAGCTTTTCTGCATTAGATTCGCTTCGATTGAGAATAACAGGTTGTTCATGGAAAAGTTCCAGGAAGTTGCTGAGTCCCAAGAGCCTGAAGAAGAAAATGAAGATGCTAGTGCAGCTGCTGGGCTTCTCGAGAATTTGAAGGTTGAGGAGAAAGAGACTGAGACCGAAAAGAAAGATGAGGAAGCGGCACCTGCTGAAGTCAAGGAGGAGGAGAAGGACAGTAAGAGTGATAAGACTGGAGAATCCACTTCCTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

217

Amino Acids

24.28

Weight (kDa)

4.62

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	37 - 154	8.4e-41	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	9, 578
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	3 cut(s)	245, 501, 609
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	388, 532
AjnI	CCWGG	2 cut(s)	72, 453
AluBI	AGCT	5 cut(s)	155, 160, 220, 397, 509
AluI	AGCT	5 cut(s)	155, 160, 220, 397, 509
Alw21I	GWGCWC	2 cut(s)	24, 330
Alw26I	GTCTC	2 cut(s)	542, 548
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	2 cut(s)	95, 521
ApeKI	GCWGC	2 cut(s)	506, 509
ApoI	RAATTY	1 cut(s)	526
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	103, 131, 392
AvaI	CYCGRG	2 cut(s)	95, 521
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	42, 73
Bbv12I	GWGCWC	2 cut(s)	24, 330
BbvI	GCAGC	2 cut(s)	496, 518
BccI	CCATC	2 cut(s)	173, 371
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	74, 455
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	542, 548
BfaI	CTAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	3 cut(s)	507, 510, 579
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	508, 511, 580
Bme1390I	CCNGG	3 cut(s)	74, 334, 455
BmeT110I	CYCGRG	2 cut(s)	95, 521
BmiI	GGNNCC	3 cut(s)	39, 70, 582
BmrFI	CCNGG	3 cut(s)	74, 334, 455
BmsI	GCATC	2 cut(s)	124, 487
BpmI	CTGGAG	1 cut(s)	651
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	65, 116
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	74, 455
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	456, 543
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	5 cut(s)	50, 113, 554, 614, 617
BseXI	GCAGC	2 cut(s)	496, 518
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	525
Bsh1285I	CGRYCG	2 cut(s)	9, 87
BshNI	GGYRCC	1 cut(s)	580
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	2 cut(s)	9, 87
BsiHKAI	GWGCWC	2 cut(s)	24, 330
BsiHKCI	CYCGRG	2 cut(s)	95, 521
BsiSI	CCGG	5 cut(s)	48, 66, 117, 240, 333
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	542, 548
BsmFI	GGGAC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	2 cut(s)	95, 521
Bsp1286I	GDGCHC	4 cut(s)	24, 42, 73, 330
Bsp143I	GATC	3 cut(s)	84, 145, 282
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	9, 578
BspCNI	CTCAG	2 cut(s)	457, 544
BspLI	GGNNCC	3 cut(s)	39, 70, 582
BspMI	ACCTGC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	84, 145, 282
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	74, 455
Bst4CI	ACNGT	3 cut(s)	214, 319, 614
Bst6I	CTCTTC	3 cut(s)	27, 117, 387
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	208, 330, 360
BstDEI	CTNAG	4 cut(s)	156, 309, 465, 552
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	3 cut(s)	87, 148, 285
BstMAI	GTCTC	2 cut(s)	542, 548
BstMBI	GATC	3 cut(s)	84, 145, 282
BstMCI	CGRYCG	2 cut(s)	9, 87
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 226, 249, 506, 584
BstNI	CCWGG	2 cut(s)	74, 455
BstSCI	CCNGG	3 cut(s)	72, 332, 453
BstV1I	GCAGC	2 cut(s)	496, 518
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	194, 210
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	3 cut(s)	208, 330, 360
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	116
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	2 cut(s)	348, 442
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	156, 309, 465, 552
DpnI	GATC	3 cut(s)	86, 147, 284
DpnII	GATC	3 cut(s)	84, 145, 282
Eam1104I	CTCTTC	3 cut(s)	27, 117, 387
EarI	CTCTTC	3 cut(s)	27, 117, 387
Eco24I	GRGCYC	2 cut(s)	42, 73
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	3 cut(s)	245, 501, 609
Eco88I	CYCGRG	2 cut(s)	95, 521
EcoRII	CCWGG	2 cut(s)	72, 453
EcoT38I	GRGCYC	2 cut(s)	42, 73
FaeI	CATG	2 cut(s)	351, 445
FaiI	YATR	3 cut(s)	260, 349, 443
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	347, 441
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	507, 510, 579
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	42, 73
Fsp4HI	GCNGC	3 cut(s)	507, 510, 579
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	3 cut(s)	507, 510, 579
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	651
HapII	CCGG	5 cut(s)	48, 66, 117, 240, 333
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	351, 445
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	6 cut(s)	168, 184, 236, 411, 467, 635
HpaII	CCGG	5 cut(s)	48, 66, 117, 240, 333
HphI	GGTGA	3 cut(s)	103, 131, 392
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	150, 225
Hpy188III	TCNNGA	3 cut(s)	323, 521, 523
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	382, 526, 601
HpyCH4III	ACNGT	3 cut(s)	214, 319, 614
HpyCH4V	TGCA	2 cut(s)	405, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 226, 249, 506, 584
HpyF3I	CTNAG	4 cut(s)	156, 309, 465, 552
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	351, 445
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	84, 145, 282
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	37, 68, 325
Lsp1109I	GCAGC	2 cut(s)	496, 518
LweI	GCATC	2 cut(s)	124, 487
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	86, 147, 284
MboI	GATC	3 cut(s)	84, 145, 282
MboII	GAAGA	8 cut(s)	41, 44, 134, 143, 404, 494, 497, 506
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	4 cut(s)	24, 42, 73, 330
MluCI	AATT	2 cut(s)	383, 526
MlyI	GAGTC	2 cut(s)	245, 476
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	5 cut(s)	48, 66, 117, 240, 333
MspR9I	CCNGG	3 cut(s)	74, 334, 455
MvaI	CCWGG	2 cut(s)	74, 455
MwoI	GCNNNNNNNGC	5 cut(s)	77, 226, 249, 506, 584
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	3 cut(s)	84, 145, 282
NlaIII	CATG	2 cut(s)	351, 445
NlaIV	GGNNCC	3 cut(s)	39, 70, 582
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	2 cut(s)	95, 521
PaqCI	CACCTGC	1 cut(s)	592
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PfeI	GAWTC	4 cut(s)	168, 184, 411, 635
PfoI	TCCNGGA	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	508, 511, 580
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	244, 475
PpsI	GAGTC	2 cut(s)	244, 475
Psp6I	CCWGG	2 cut(s)	72, 453
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	72, 453
PspN4I	GGNNCC	3 cut(s)	39, 70, 582
PspXI	VCTCGAGB	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	387
SatI	GCNGC	3 cut(s)	507, 510, 579
Sau3AI	GATC	3 cut(s)	84, 145, 282
SchI	GAGTC	2 cut(s)	245, 476
ScrFI	CCNGG	3 cut(s)	74, 334, 455
SduI	GDGCHC	4 cut(s)	24, 42, 73, 330
SfaNI	GCATC	2 cut(s)	124, 487
Sfr274I	CTCGAG	2 cut(s)	95, 521
SgrAI	CRCCGGYG	1 cut(s)	116
SlaI	CTCGAG	2 cut(s)	95, 521
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	95, 521
SmoI	CTYRAG	2 cut(s)	95, 521
Sse9I	AATT	2 cut(s)	383, 526
SsiI	CCGC	2 cut(s)	9, 578
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	72, 332, 453
TaaI	ACNGT	3 cut(s)	214, 319, 614
TaqI	TCGA	6 cut(s)	5, 96, 144, 171, 419, 522
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	2 cut(s)	383, 526
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	168, 184, 411, 635
TscAI	CASTG	2 cut(s)	194, 217
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	506, 509
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	430, 507
TspRI	CASTG	2 cut(s)	194, 217
XapI	RAATTY	1 cut(s)	526
XhoI	CTCGAG	2 cut(s)	95, 521
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.