Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

4046303 .. 4048236

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAGTGCCGCCGATCCCGAGCACAGAGAAGACGAGGAAGCCCCACTCGCCGGCGACGACGAGGACACCGGAGCTCAGGTCGCTCCGATCGTCCGGCTCGAGGAGGTCGCCGTCACCACCGGCGAAGAAGAGGAGGACGCCATCCTCGATCTGAAGGCGAAGCTTTACCGATTTGATAAAGACGGTAACCAGTGGAAAGAGCGAGGTGCTGGCACTGTCAAGTTTCTCAAGCACAAAAAGACGGGCAAGGTCCGCCTTGTCATGCGCCAGTCCAAAACCCTAAAGATCTGCGCCAATCATCTCGTTCTACCGAAGATGACGGTCCAGGAGCACGCCGGCAATGAGAAGTCTTGTGTTTGGCACGCGACTGATTTTGCTGACGGGAAATTGAAGGAGGAGCTTTTCTGCATTAGATTCGCCTCAATTGAAAATAACAAATTGTTCATGGAGAAGTTTCAAGAAGTTGCCGAATCCCAGAGTCCAGAAGAAGAAAGCAAAGAAGCTACTGAAGCTGCTGGGCTCCTCGATAAATTGAGTGTTGGGGAGAAGTCTGAGGCAGAGGCACCTGCTGCAACCAAGAGTGATAGAGTAAAAGAAGCAGAAGCACCTGCTGAGGAGAAAGCAGAAGAAAAGGCACCTGATGTCAAGGGGAAGAAGAAAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

224

Amino Acids

24.7

Weight (kDa)

4.99

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	577, 619
Acc36I	ACCTGC	2 cut(s)	577, 619
AccB1I	GGYRCC	2 cut(s)	565, 637
AccII	CGCG	1 cut(s)	368
AciI	CCGC	2 cut(s)	12, 256
AclWI	GGATC	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	176, 531
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	53, 103
AgsI	TTSAA	3 cut(s)	394, 431, 461
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	5 cut(s)	77, 166, 403, 506, 515
AluI	AGCT	5 cut(s)	77, 166, 403, 506, 515
Alw21I	GWGCWC	3 cut(s)	27, 79, 336
AlwI	GGATC	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	20, 101
ApeKI	GCWGC	2 cut(s)	515, 572
AspLEI	GCGC	2 cut(s)	270, 296
AspS9I	GGNCC	2 cut(s)	253, 325
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	2 cut(s)	20, 101
AvaII	GGWCC	2 cut(s)	253, 325
BanI	GGYRCC	2 cut(s)	565, 637
BanII	GRGCYC	2 cut(s)	79, 525
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	3 cut(s)	27, 79, 336
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	502, 559
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	329
BfuAI	ACCTGC	2 cut(s)	577, 619
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	3 cut(s)	12, 516, 573
BlsI	GCNGC	3 cut(s)	13, 517, 574
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	253, 325
BmeT110I	CYCGRG	2 cut(s)	20, 101
BmgT120I	GGNCC	2 cut(s)	253, 325
BmiI	GGNNCC	3 cut(s)	524, 567, 639
BmrFI	CCNGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	78, 615
BpuEI	CTTGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 103
Bse118I	RCCGGY	3 cut(s)	53, 122, 338
Bse1I	ACTGG	2 cut(s)	193, 271
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	53, 103
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	92, 546, 606
BseNI	ACTGG	2 cut(s)	193, 271
BseRI	GAGGAG	5 cut(s)	119, 149, 413, 515, 632
BseXI	GCAGC	2 cut(s)	502, 559
BseYI	CCCAGC	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	368
Bsh1285I	CGRYCG	1 cut(s)	93
BshNI	GGYRCC	2 cut(s)	565, 637
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	3 cut(s)	27, 79, 336
BsiHKCI	CYCGRG	2 cut(s)	20, 101
BsiSI	CCGG	5 cut(s)	54, 72, 97, 123, 339
BslI	CCNNNNNNNGG	2 cut(s)	53, 103
BsoBI	CYCGRG	2 cut(s)	20, 101
Bsp1286I	GDGCHC	4 cut(s)	27, 79, 336, 525
Bsp143I	GATC	4 cut(s)	16, 90, 151, 288
BspACI	CCGC	2 cut(s)	12, 256
BspCNI	CTCAG	3 cut(s)	91, 547, 607
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	3 cut(s)	524, 567, 639
BspMI	ACCTGC	2 cut(s)	577, 619
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	565, 637
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	3 cut(s)	53, 122, 338
BsrI	ACTGG	2 cut(s)	193, 271
BssAI	RCCGGY	3 cut(s)	53, 122, 338
BssMI	GATC	4 cut(s)	16, 90, 151, 288
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	188, 220, 325
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	55, 214, 336, 340, 366
BstDEI	CTNAG	3 cut(s)	78, 555, 615
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	2 cut(s)	270, 296
BstKTI	GATC	4 cut(s)	19, 93, 154, 291
BstMBI	GATC	4 cut(s)	16, 90, 151, 288
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
BstNI	CCWGG	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	502, 559
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	200, 216
BveI	ACCTGC	2 cut(s)	577, 619
Cac8I	GCNNGC	5 cut(s)	55, 214, 336, 340, 366
CfoI	GCGC	2 cut(s)	270, 296
Cfr10I	RCCGGY	3 cut(s)	53, 122, 338
Cfr13I	GGNCC	2 cut(s)	253, 325
CseI	GACGC	1 cut(s)	149
CviAII	CATG	2 cut(s)	265, 448
CviJI	RGCY	8 cut(s)	44, 77, 100, 166, 403, 506, 515, 523
CviKI_1	RGCY	8 cut(s)	44, 77, 100, 166, 403, 506, 515, 523
DdeI	CTNAG	3 cut(s)	78, 555, 615
DpnI	GATC	4 cut(s)	18, 92, 153, 290
DpnII	GATC	4 cut(s)	16, 90, 151, 288
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	79, 525
Eco47I	GGWCC	2 cut(s)	253, 325
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	176, 531
Eco88I	CYCGRG	2 cut(s)	20, 101
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	79, 525
FaeI	CATG	2 cut(s)	268, 451
FaiI	YATR	2 cut(s)	266, 449
FatI	CATG	2 cut(s)	264, 447
Fnu4HI	GCNGC	3 cut(s)	12, 516, 573
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	2 cut(s)	79, 525
Fsp4HI	GCNGC	3 cut(s)	12, 516, 573
GlaI	GCGC	2 cut(s)	269, 295
GluI	GCNGC	3 cut(s)	12, 516, 573
GsaI	CCCAGC	1 cut(s)	522
HapII	CCGG	5 cut(s)	54, 72, 97, 123, 339
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	270, 296
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	268, 451
Hin6I	GCGC	2 cut(s)	268, 294
HinP1I	GCGC	2 cut(s)	268, 294
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	417, 473, 481
HpaII	CCGG	5 cut(s)	54, 72, 97, 123, 339
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	90, 156, 556
Hpy188III	TCNNGA	3 cut(s)	20, 461, 485
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	2 cut(s)	151, 388
HpyCH4III	ACNGT	3 cut(s)	188, 220, 325
HpyCH4V	TGCA	2 cut(s)	411, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
HpyF3I	CTNAG	3 cut(s)	78, 555, 615
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	268, 451
HspAI	GCGC	2 cut(s)	268, 294
KroI	GCCGGC	2 cut(s)	53, 338
KroNI	GCCGGC	2 cut(s)	55, 340
Kzo9I	GATC	4 cut(s)	16, 90, 151, 288
LmnI	GCTCC	5 cut(s)	74, 91, 331, 400, 528
Lsp1109I	GCAGC	2 cut(s)	502, 559
MaeIII	GTNAC	2 cut(s)	115, 188
MalI	GATC	4 cut(s)	18, 92, 153, 290
MboI	GATC	4 cut(s)	16, 90, 151, 288
MboII	GAAGA	9 cut(s)	44, 140, 143, 328, 500, 503, 641, 667, 670
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	4 cut(s)	27, 79, 336, 525
MluCI	AATT	4 cut(s)	389, 426, 440, 533
MlyI	GAGTC	1 cut(s)	490
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	53, 338
MseI	TTAA	1 cut(s)	670
MspI	CCGG	5 cut(s)	54, 72, 97, 123, 339
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
NaeI	GCCGGC	2 cut(s)	55, 340
NdeII	GATC	4 cut(s)	16, 90, 151, 288
NgoMIV	GCCGGC	2 cut(s)	53, 338
NlaIII	CATG	2 cut(s)	268, 451
NlaIV	GGNNCC	3 cut(s)	524, 567, 639
NmuCI	GTSAC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	101
PaqCI	CACCTGC	2 cut(s)	577, 619
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 90, 99, 147
PdiI	GCCGGC	2 cut(s)	55, 340
PfeI	GAWTC	2 cut(s)	417, 473
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	13, 517, 574
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	524, 567, 639
PspPI	GGNCC	2 cut(s)	253, 325
PspXI	VCTCGAGB	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	288
PvuI	CGATCG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	670
SatI	GCNGC	3 cut(s)	12, 516, 573
Sau3AI	GATC	4 cut(s)	16, 90, 151, 288
Sau96I	GGNCC	2 cut(s)	253, 325
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	4 cut(s)	27, 79, 336, 525
Sfr274I	CTCGAG	1 cut(s)	101
SgrAI	CRCCGGYG	2 cut(s)	53, 122
SinI	GGWCC	2 cut(s)	253, 325
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 230
SmoI	CTYRAG	2 cut(s)	101, 230
Sse9I	AATT	4 cut(s)	389, 426, 440, 533
SsiI	CCGC	2 cut(s)	12, 256
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	188, 220, 325
TaqI	TCGA	4 cut(s)	5, 102, 150, 528
TasI	AATT	4 cut(s)	389, 426, 440, 533
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	417, 473
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TscAI	CASTG	2 cut(s)	200, 223
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	515, 572
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	200, 223
VpaK11BI	GGWCC	2 cut(s)	253, 325
XhoI	CTCGAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.