Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

5194721 .. 5198409

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1065200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAGTGCCGCCGATCCCGAGCATAGAGAAGACGAGGAGGCCCCACTCGCCGGCGACGACGAGGACACCGGAGCTCAGGTAGCTCCGATTGTCCGGCTCGAGGAGGTCGCCGTTACCACCGGCGAAGAAGAGGAAGACGCCATCCTCGATCTGAAGGCGAAGCTTTACCGATTTGATAAAGACGGTAACCAGTGGAAAGAGCGAGGTGCTGGCACTGTCAAGTTTCTCAAGCACAAAAAGACGGGCAAGGTCCGCCTTGTCATGCGCCAGTCCAAAACCCTAAAGATCTGCGCCAATCATCTCGTTCTACCGAAGATGACAGTCCAGGAGCACGCCGGGAATGAGAAGTCTTGTGTTTGGCACGCAACTGATTTTGCCGATGGGGAATTGAAGGAGGAGCTTTTCTGCATTAGATTCGCTTCAATTGAAAATAACAAATTGTTCATGGAGAAGTTTCAAGAAGTTGCCGAATCCCAGAGTCCAGAAGAAGAAAGCAAGGAAGCTACTGAAGCTGCTGGGCTTCTCGATAAATTGAGTGTTGGGGAGAAGTCTGAGGCAGAGGCACCTGCTGCAACCAAGAGTGATACAGTAAAAGAAGCAGAAGCACCTGCTGAGGAGAAAGCAGAAGAAACGGCACCTGATGTCAAGGGGAAGAAGAAAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

224

Amino Acids

24.62

Weight (kDa)

4.81

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	39 - 156	2.1e-40	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	577, 619
Acc36I	ACCTGC	2 cut(s)	577, 619
AccB1I	GGYRCC	2 cut(s)	565, 637
AciI	CCGC	2 cut(s)	12, 256
AclWI	GGATC	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	176, 531
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	53, 103
AgsI	TTSAA	4 cut(s)	394, 426, 431, 461
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	6 cut(s)	77, 86, 166, 403, 506, 515
AluI	AGCT	6 cut(s)	77, 86, 166, 403, 506, 515
Alw21I	GWGCWC	2 cut(s)	79, 336
AlwI	GGATC	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	20, 101
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	515, 572
AspLEI	GCGC	2 cut(s)	270, 296
AspS9I	GGNCC	2 cut(s)	43, 253
AsuC2I	CCSGG	1 cut(s)	340
AvaI	CYCGRG	2 cut(s)	20, 101
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	2 cut(s)	565, 637
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	39, 144
Bbv12I	GWGCWC	2 cut(s)	79, 336
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	502, 559
BccI	CCATC	2 cut(s)	152, 377
BceAI	ACGGC	2 cut(s)	98, 651
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	340
BfuAI	ACCTGC	2 cut(s)	577, 619
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	3 cut(s)	12, 516, 573
BlsI	GCNGC	3 cut(s)	13, 517, 574
Bme1390I	CCNGG	2 cut(s)	329, 340
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	2 cut(s)	20, 101
BmgT120I	GGNCC	2 cut(s)	43, 253
BmiI	GGNNCC	3 cut(s)	45, 567, 639
BmrFI	CCNGG	2 cut(s)	329, 340
BpiI	GAAGAC	2 cut(s)	39, 144
Bpu10I	CCTNAGC	2 cut(s)	78, 615
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 103
Bse118I	RCCGGY	2 cut(s)	53, 122
Bse1I	ACTGG	2 cut(s)	193, 271
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	53, 103
BseMII	CTCAG	3 cut(s)	92, 546, 606
BseNI	ACTGG	2 cut(s)	193, 271
BseRI	GAGGAG	4 cut(s)	53, 119, 413, 632
BseXI	GCAGC	2 cut(s)	502, 559
BseYI	CCCAGC	1 cut(s)	518
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	565, 637
BsiHKAI	GWGCWC	2 cut(s)	79, 336
BsiHKCI	CYCGRG	2 cut(s)	20, 101
BsiSI	CCGG	5 cut(s)	54, 72, 97, 123, 339
BslI	CCNNNNNNNGG	2 cut(s)	53, 103
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	20, 101
Bsp1286I	GDGCHC	2 cut(s)	79, 336
Bsp143I	GATC	3 cut(s)	16, 151, 288
BspACI	CCGC	2 cut(s)	12, 256
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	3 cut(s)	91, 547, 607
BspLI	GGNNCC	3 cut(s)	45, 567, 639
BspMI	ACCTGC	2 cut(s)	577, 619
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	565, 637
BsrFI	RCCGGY	2 cut(s)	53, 122
BsrI	ACTGG	2 cut(s)	193, 271
BssAI	RCCGGY	2 cut(s)	53, 122
BssMI	GATC	3 cut(s)	16, 151, 288
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	188, 220, 325, 592
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	55, 214, 336, 366
BstDEI	CTNAG	3 cut(s)	78, 555, 615
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	270, 296
BstKTI	GATC	3 cut(s)	19, 154, 291
BstMBI	GATC	3 cut(s)	16, 151, 288
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
BstNI	CCWGG	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	327, 338
BstV1I	GCAGC	2 cut(s)	502, 559
BstV2I	GAAGAC	2 cut(s)	39, 144
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	200, 216
BveI	ACCTGC	2 cut(s)	577, 619
Cac8I	GCNNGC	4 cut(s)	55, 214, 336, 366
CfoI	GCGC	2 cut(s)	270, 296
Cfr10I	RCCGGY	2 cut(s)	53, 122
Cfr13I	GGNCC	2 cut(s)	43, 253
CseI	GACGC	1 cut(s)	149
CviAII	CATG	2 cut(s)	265, 448
CviJI	RGCY	9 cut(s)	44, 77, 86, 100, 166, 403, 506, 515, 523
CviKI_1	RGCY	9 cut(s)	44, 77, 86, 100, 166, 403, 506, 515, 523
DdeI	CTNAG	3 cut(s)	78, 555, 615
DpnI	GATC	3 cut(s)	18, 153, 290
DpnII	GATC	3 cut(s)	16, 151, 288
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	176, 531
Eco88I	CYCGRG	2 cut(s)	20, 101
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	2 cut(s)	268, 451
FaiI	YATR	3 cut(s)	27, 266, 449
FatI	CATG	2 cut(s)	264, 447
Fnu4HI	GCNGC	3 cut(s)	12, 516, 573
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	12, 516, 573
GlaI	GCGC	2 cut(s)	269, 295
GluI	GCNGC	3 cut(s)	12, 516, 573
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	5 cut(s)	54, 72, 97, 123, 339
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	270, 296
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	268, 451
Hin6I	GCGC	2 cut(s)	268, 294
HinP1I	GCGC	2 cut(s)	268, 294
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	417, 473, 481
HpaII	CCGG	5 cut(s)	54, 72, 97, 123, 339
Hpy188I	TCNGA	3 cut(s)	90, 156, 556
Hpy188III	TCNNGA	4 cut(s)	20, 461, 485, 527
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	2 cut(s)	151, 388
HpyCH4III	ACNGT	4 cut(s)	188, 220, 325, 592
HpyCH4V	TGCA	2 cut(s)	411, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
HpyF3I	CTNAG	3 cut(s)	78, 555, 615
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	268, 451
HspAI	GCGC	2 cut(s)	268, 294
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	16, 151, 288
LmnI	GCTCC	4 cut(s)	74, 91, 331, 400
Lsp1109I	GCAGC	2 cut(s)	502, 559
MaeIII	GTNAC	2 cut(s)	115, 188
MalI	GATC	3 cut(s)	18, 153, 290
MboI	GATC	3 cut(s)	16, 151, 288
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	79, 336
MluCI	AATT	4 cut(s)	389, 426, 440, 533
MlyI	GAGTC	1 cut(s)	490
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	670
MspI	CCGG	5 cut(s)	54, 72, 97, 123, 339
MspR9I	CCNGG	2 cut(s)	329, 340
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	50, 83, 255, 512, 572
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	16, 151, 288
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	268, 451
NlaIV	GGNNCC	3 cut(s)	45, 567, 639
PaeR7I	CTCGAG	1 cut(s)	101
PaqCI	CACCTGC	2 cut(s)	577, 619
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 147
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	417, 473
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	13, 517, 574
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	45, 567, 639
PspPI	GGNCC	2 cut(s)	43, 253
PspXI	VCTCGAGB	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	670
SatI	GCNGC	3 cut(s)	12, 516, 573
Sau3AI	GATC	3 cut(s)	16, 151, 288
Sau96I	GGNCC	2 cut(s)	43, 253
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	329, 340
SduI	GDGCHC	2 cut(s)	79, 336
Sfr274I	CTCGAG	1 cut(s)	101
SgrAI	CRCCGGYG	2 cut(s)	53, 122
SinI	GGWCC	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 230
SmoI	CTYRAG	2 cut(s)	101, 230
Sse9I	AATT	4 cut(s)	389, 426, 440, 533
SsiI	CCGC	2 cut(s)	12, 256
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	327, 338
TaaI	ACNGT	4 cut(s)	188, 220, 325, 592
TaqI	TCGA	4 cut(s)	5, 102, 150, 528
TasI	AATT	4 cut(s)	389, 426, 440, 533
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	417, 473
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TscAI	CASTG	2 cut(s)	200, 223
TseI	GCWGC	2 cut(s)	515, 572
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	200, 223
VpaK11BI	GGWCC	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.