Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Forward (+)

12826804 .. 12828987

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGAGCATTAGCAACGAGCCCGAGCGTGAGAACAGAGACGAAGAAGAGACTGGAGCCAACGAAGATGAAGACACCGGTGCTCAGGTTGCTCCTATCGTCAGGCTTGAAGAAGTCGCCGTCACCACCGGTGAAGAAGACGAAGACACCATCCTCGATCTGAAATCGAAGTTGTATCGATTTGATAAAGATGGAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTTTTGAAACATAGAGTTTCTGGGAAGATTCGTCTCGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCATCTTGTTGGATCGGGTATGAGTGTTCAGGAACACGCTGGGAATGATAAGTCTTGTGTATGGCACGCTCGTGATTTCTCCGATGGTGAATTGAAGGATGAGCTCTTCTGTATCCGGTTTGCTTCAGTTGAGAATTGCAAAGCATTTATGCAAAAGTTCAAGGAAGTAGCTGAATCTGAAGAAGAGAAAGAAGAGAGCAAAGATGCCTCTGATACCGCTGGTCTTCTTGAGAAGTTAACAGTGGAAGAGAAGGAAAGTGAGAAGAAACCAGTGGAGAAGGCAGAGGAAAACAAAAAGAGTGAAGCTGTTGAAGAAAAGAAAACAGAGGAGTCTGTTCCCTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

217

Amino Acids

24.39

Weight (kDa)

4.83

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	41 - 158	2e-38	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	414, 504
AfaI	GTAC	1 cut(s)	223
AgeI	ACCGGT	2 cut(s)	77, 128
AgsI	TTSAA	6 cut(s)	110, 238, 292, 400, 466, 617
AleI	CACNNNNGTG	1 cut(s)	375
AluBI	AGCT	4 cut(s)	409, 476, 611, 650
AluI	AGCT	4 cut(s)	409, 476, 611, 650
Alw21I	GWGCWC	2 cut(s)	85, 411
Alw26I	GTCTC	3 cut(s)	33, 44, 269
AlwI	GGATC	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	23
AsiGI	ACCGGT	2 cut(s)	77, 128
AsuHPI	GGTGA	3 cut(s)	115, 143, 404
AvaI	CYCGRG	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	24, 411
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	4 cut(s)	78, 144, 150, 521
Bbv12I	GWGCWC	2 cut(s)	85, 411
BbvCI	CCTCAGC	1 cut(s)	646
BccI	CCATC	3 cut(s)	158, 185, 383
BceAI	ACGGC	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	3 cut(s)	33, 44, 269
BfuI	GTATCC	1 cut(s)	428
BglII	AGATCT	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	4 cut(s)	78, 144, 150, 521
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	84, 646
BpuEI	CTTGAG	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	178
BsaWI	WCCGGW	3 cut(s)	77, 128, 420
Bse118I	RCCGGY	2 cut(s)	77, 128
Bse1I	ACTGG	2 cut(s)	58, 575
BseCI	ATCGAT	1 cut(s)	178
BseGI	GGATG	2 cut(s)	150, 409
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	58, 575
BseRI	GAGGAG	1 cut(s)	647
BseYI	CCCAGC	1 cut(s)	344
BshTI	ACCGGT	2 cut(s)	77, 128
BshVI	ATCGAT	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	85, 411
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	78, 129, 421
BsmAI	GTCTC	3 cut(s)	33, 44, 269
BsmBI	CGTCTC	2 cut(s)	33, 269
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	24, 85, 411
Bsp143I	GATC	3 cut(s)	157, 294, 317
BspACI	CCGC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	416
BsrFI	RCCGGY	2 cut(s)	77, 128
BsrI	ACTGG	2 cut(s)	58, 575
BssAI	RCCGGY	2 cut(s)	77, 128
BssMI	GATC	3 cut(s)	157, 294, 317
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	226, 547
Bst6I	CTCTTC	5 cut(s)	42, 416, 483, 492, 546
BstC8I	GCNNGC	2 cut(s)	7, 372
BstDEI	CTNAG	2 cut(s)	84, 646
BstF5I	GGATG	2 cut(s)	150, 409
BstKTI	GATC	3 cut(s)	160, 297, 320
BstMAI	GTCTC	3 cut(s)	33, 44, 269
BstMBI	GATC	3 cut(s)	157, 294, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstV2I	GAAGAC	4 cut(s)	78, 144, 150, 521
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	150, 409
BtsIMutI	CAGTG	3 cut(s)	206, 552, 582
Cac8I	GCNNGC	2 cut(s)	7, 372
Cfr10I	RCCGGY	2 cut(s)	77, 128
ClaI	ATCGAT	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	222
CspAI	ACCGGT	2 cut(s)	77, 128
CviJI	RGCY	7 cut(s)	22, 59, 106, 409, 476, 611, 650
CviKI_1	RGCY	7 cut(s)	22, 59, 106, 409, 476, 611, 650
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	84, 646
DpnI	GATC	3 cut(s)	159, 296, 319
DpnII	GATC	3 cut(s)	157, 294, 317
Eam1104I	CTCTTC	5 cut(s)	42, 416, 483, 492, 546
EarI	CTCTTC	5 cut(s)	42, 416, 483, 492, 546
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	24, 411
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	414, 504
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	24, 411
Esp3I	CGTCTC	2 cut(s)	33, 269
FaiI	YATR	5 cut(s)	243, 272, 326, 367, 455
FokI	GGATG	2 cut(s)	137, 416
FriOI	GRGCYC	2 cut(s)	24, 411
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	75
HapII	CCGG	3 cut(s)	78, 129, 421
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	259, 479, 635
HpaI	GTTAAC	1 cut(s)	543
HpaII	CCGG	3 cut(s)	78, 129, 421
HphI	GGTGA	3 cut(s)	115, 143, 404
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	162, 388, 484, 517
Hpy188III	TCNNGA	3 cut(s)	335, 377, 533
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	4 cut(s)	199, 394, 550, 577
HpyCH4III	ACNGT	2 cut(s)	226, 547
HpyCH4V	TGCA	2 cut(s)	444, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	84, 646
KspAI	GTTAAC	1 cut(s)	543
Kzo9I	GATC	3 cut(s)	157, 294, 317
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	2 cut(s)	56, 97
LweI	GCATC	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	159, 296, 319
MboI	GATC	3 cut(s)	157, 294, 317
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	3 cut(s)	24, 85, 411
MluCI	AATT	2 cut(s)	395, 439
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	164, 206, 267, 523, 583, 625
MseI	TTAA	3 cut(s)	228, 542, 652
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	78, 129, 421
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	157, 294, 317
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	259, 479
PinAI	ACCGGT	2 cut(s)	77, 128
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	228, 542, 652
Sau3AI	GATC	3 cut(s)	157, 294, 317
SchI	GAGTC	1 cut(s)	644
SduI	GDGCHC	3 cut(s)	24, 85, 411
SetI	ASST	6 cut(s)	90, 217, 411, 478, 613, 652
SfaNI	GCATC	1 cut(s)	499
SgrAI	CRCCGGYG	2 cut(s)	77, 128
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	2 cut(s)	395, 439
SsiI	CCGC	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	226, 547
TaqI	TCGA	4 cut(s)	156, 167, 178, 281
TasI	AATT	2 cut(s)	395, 439
TfiI	GAWTC	2 cut(s)	259, 479
Tru1I	TTAA	3 cut(s)	228, 542, 652
Tru9I	TTAA	3 cut(s)	228, 542, 652
TscAI	CASTG	3 cut(s)	206, 552, 582
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	206, 552, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.