Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Forward (+)

33258509 .. 33261049

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCTTCCGCCGACGCCGAGCACCGAGAAGAAGAGGAGCCCCTCGCCGGAGATGACGAGGACACCGGGGCCCAGGTCGCTCCGATCGTCAGGCTCGAGGAGGTCGCCGTCTCCACCGGCGAAGAGAACGAAGATGCTATCCTCGATCTGAAAGCTAAGCTGTACCGATTCGATAAGGATGGGAATCAGTGGAAGGAGCGAGGCGCCGGGACTGTGAAGCTTCTGAAGCACAAGGAGTCCAGCAAGGTTCGCCTTGTTATGCGACAGTCTAAAACCCTAAAGATCTGCGCTAATCATCTCGTGCTGCCTAAGATGACAGTCCAGGAGCACGCCGGGAATGAGAAGTCGTGTGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAGGAAGAGCTTTTCTGCATTAGATTCGCTTCCATTGAGAATAACAGGTTGTTCATGGAAAAGTTCCAGGAAGTGGCTGAGTCCCAAGAGCCTGAAGGAGAAAGTGAAGATGCTAATGCAGCTGCTGGGCTTCTCGAGACTTTGAAAGTTGAGGAGAAAGAAACCACGGCCGAAAAGAAAGATGAGGAAGCCGCTCCTGCTGCAGTCAAGGAGGAGGAGAAGGACATTAAGAGTGATAAGGCTGCTGAAGAATCTTTGTCCTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

219

Amino Acids

24.25

Weight (kDa)

4.66

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	37 - 154	4.8e-41	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	581
AciI	CCGC	2 cut(s)	9, 579
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	3 cut(s)	245, 501, 654
AcyI	GRCGYC	2 cut(s)	15, 204
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	47, 460
AgsI	TTSAA	2 cut(s)	388, 532
AjnI	CCWGG	3 cut(s)	72, 321, 453
AluBI	AGCT	5 cut(s)	155, 160, 220, 397, 509
AluI	AGCT	5 cut(s)	155, 160, 220, 397, 509
Alw21I	GWGCWC	2 cut(s)	24, 330
Alw26I	GTCTC	2 cut(s)	115, 518
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	2 cut(s)	95, 521
AoxI	GGCC	2 cut(s)	69, 555
ApaI	GGGCCC	1 cut(s)	73
ApeKI	GCWGC	5 cut(s)	304, 506, 509, 587, 629
AspLEI	GCGC	2 cut(s)	206, 290
AspS9I	GGNCC	2 cut(s)	69, 70
AsuC2I	CCSGG	3 cut(s)	67, 208, 334
AsuHPI	GGTGA	1 cut(s)	392
AvaI	CYCGRG	2 cut(s)	95, 521
BaeGI	GKGCMC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	42, 73
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	24, 330
BbvI	GCAGC	5 cut(s)	291, 496, 518, 574, 616
BccI	CCATC	2 cut(s)	173, 371
BceAI	ACGGC	2 cut(s)	92, 570
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	3 cut(s)	74, 323, 455
BcnI	CCSGG	3 cut(s)	67, 208, 334
BcoDI	GTCTC	2 cut(s)	115, 518
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	207
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	6 cut(s)	305, 507, 510, 579, 588, 630
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	6 cut(s)	306, 508, 511, 580, 589, 631
Bme1390I	CCNGG	6 cut(s)	67, 74, 208, 323, 334, 455
BmeT110I	CYCGRG	2 cut(s)	95, 521
BmgT120I	GGNCC	2 cut(s)	69, 70
BmiI	GGNNCC	4 cut(s)	39, 70, 71, 205
BmrFI	CCNGG	6 cut(s)	67, 74, 208, 323, 334, 455
BmsI	GCATC	2 cut(s)	124, 487
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	3 cut(s)	67, 208, 334
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	2 cut(s)	15, 204
BsaJI	CCNNGG	3 cut(s)	66, 72, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 460
Bse118I	RCCGGY	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	74, 323, 455
BseDI	CCNNGG	3 cut(s)	66, 72, 552
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	47, 460
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	5 cut(s)	50, 113, 554, 614, 617
BseSI	GKGCMC	1 cut(s)	73
BseX3I	CGGCCG	1 cut(s)	555
BseXI	GCAGC	5 cut(s)	291, 496, 518, 574, 616
BseYI	CCCAGC	1 cut(s)	512
Bsh1285I	CGRYCG	2 cut(s)	87, 558
BshFI	GGCC	2 cut(s)	71, 557
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	87, 558
BsiHKAI	GWGCWC	2 cut(s)	24, 330
BsiHKCI	CYCGRG	2 cut(s)	95, 521
BsiSI	CCGG	5 cut(s)	48, 66, 117, 207, 333
BslFI	GGGAC	2 cut(s)	223, 454
BslI	CCNNNNNNNGG	2 cut(s)	47, 460
BsmAI	GTCTC	2 cut(s)	115, 518
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	223, 454
BsnI	GGCC	2 cut(s)	71, 557
BsoBI	CYCGRG	2 cut(s)	95, 521
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	4 cut(s)	24, 42, 73, 330
Bsp143I	GATC	3 cut(s)	84, 145, 282
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	9, 579
BspANI	GGCC	2 cut(s)	71, 557
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	4 cut(s)	39, 70, 71, 205
BspMAI	CTGCAG	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	66, 72, 552
BssMI	GATC	3 cut(s)	84, 145, 282
BssNI	GRCGYC	2 cut(s)	15, 204
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	3 cut(s)	74, 323, 455
Bst4CI	ACNGT	3 cut(s)	214, 267, 319
Bst6I	CTCTTC	3 cut(s)	27, 117, 387
BstACI	GRCGYC	2 cut(s)	15, 204
BstC8I	GCNNGC	2 cut(s)	330, 360
BstDEI	CTNAG	3 cut(s)	156, 309, 465
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 290
BstKTI	GATC	3 cut(s)	87, 148, 285
BstMAI	GTCTC	2 cut(s)	115, 518
BstMBI	GATC	3 cut(s)	84, 145, 282
BstMCI	CGRYCG	2 cut(s)	87, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 226, 249, 506, 584, 587
BstNI	CCWGG	3 cut(s)	74, 323, 455
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	6 cut(s)	65, 72, 206, 321, 332, 453
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	291, 496, 518, 574, 616
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	71, 557
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	194, 363
Cac8I	GCNNGC	2 cut(s)	330, 360
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	206, 290
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	69, 70
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	2 cut(s)	359, 442
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	156, 309, 465
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	3 cut(s)	86, 147, 284
DpnII	GATC	3 cut(s)	84, 145, 282
EaeI	YGGCCR	1 cut(s)	555
EagI	CGGCCG	1 cut(s)	555
Eam1104I	CTCTTC	3 cut(s)	27, 117, 387
EarI	CTCTTC	3 cut(s)	27, 117, 387
EclXI	CGGCCG	1 cut(s)	555
Eco24I	GRGCYC	2 cut(s)	42, 73
Eco52I	CGGCCG	1 cut(s)	555
Eco57I	CTGAAG	3 cut(s)	245, 501, 654
Eco88I	CYCGRG	2 cut(s)	95, 521
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	72, 321, 453
EcoT38I	GRGCYC	2 cut(s)	42, 73
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	362, 445
FaiI	YATR	3 cut(s)	260, 360, 443
FaqI	GGGAC	2 cut(s)	223, 454
FatI	CATG	2 cut(s)	358, 441
Fnu4HI	GCNGC	6 cut(s)	305, 507, 510, 579, 588, 630
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	42, 73
Fsp4HI	GCNGC	6 cut(s)	305, 507, 510, 579, 588, 630
GlaI	GCGC	2 cut(s)	205, 289
GluI	GCNGC	6 cut(s)	305, 507, 510, 579, 588, 630
GsaI	CCCAGC	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	71, 557
HapII	CCGG	5 cut(s)	48, 66, 117, 207, 333
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	206, 290
Hin1I	GRCGYC	2 cut(s)	15, 204
Hin1II	CATG	2 cut(s)	362, 445
Hin6I	GCGC	2 cut(s)	204, 288
HinP1I	GCGC	2 cut(s)	204, 288
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	6 cut(s)	168, 184, 236, 411, 467, 638
HpaII	CCGG	5 cut(s)	48, 66, 117, 207, 333
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	84, 150, 225
Hpy188III	TCNNGA	2 cut(s)	521, 523
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	187, 382, 476, 601
HpyCH4III	ACNGT	3 cut(s)	214, 267, 319
HpyCH4V	TGCA	3 cut(s)	405, 506, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 226, 249, 506, 584, 587
HpyF3I	CTNAG	3 cut(s)	156, 309, 465
Hsp92I	GRCGYC	2 cut(s)	15, 204
Hsp92II	CATG	2 cut(s)	362, 445
HspAI	GCGC	2 cut(s)	204, 288
KasI	GGCGCC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	84, 145, 282
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	5 cut(s)	37, 85, 196, 325, 586
Lsp1109I	GCAGC	5 cut(s)	291, 496, 518, 574, 616
LweI	GCATC	2 cut(s)	124, 487
MalI	GATC	3 cut(s)	86, 147, 284
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	3 cut(s)	84, 145, 282
MboII	GAAGA	7 cut(s)	41, 44, 134, 143, 404, 506, 647
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	4 cut(s)	24, 42, 73, 330
MluCI	AATT	1 cut(s)	383
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	245, 476
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	5 cut(s)	48, 66, 117, 207, 333
MspR9I	CCNGG	6 cut(s)	67, 74, 208, 323, 334, 455
MvaI	CCWGG	3 cut(s)	74, 323, 455
MwoI	GCNNNNNNNGC	6 cut(s)	77, 226, 249, 506, 584, 587
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	3 cut(s)	67, 208, 334
NdeII	GATC	3 cut(s)	84, 145, 282
NlaIII	CATG	2 cut(s)	362, 445
NlaIV	GGNNCC	4 cut(s)	39, 70, 71, 205
NmeAIII	GCCGAG	1 cut(s)	43
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PaeR7I	CTCGAG	2 cut(s)	95, 521
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PfeI	GAWTC	4 cut(s)	168, 184, 411, 638
PflMI	CCANNNNNTGG	1 cut(s)	460
PfoI	TCCNGGA	2 cut(s)	321, 453
PkrI	GCNGC	6 cut(s)	306, 508, 511, 580, 589, 631
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	244, 475
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	244, 475
Psp6I	CCWGG	3 cut(s)	72, 321, 453
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	72, 321, 453
PspN4I	GGNNCC	4 cut(s)	39, 70, 71, 205
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	69, 70
PspXI	VCTCGAGB	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	6 cut(s)	305, 507, 510, 579, 588, 630
Sau3AI	GATC	3 cut(s)	84, 145, 282
Sau96I	GGNCC	2 cut(s)	69, 70
SchI	GAGTC	2 cut(s)	245, 476
ScrFI	CCNGG	6 cut(s)	67, 74, 208, 323, 334, 455
SduI	GDGCHC	4 cut(s)	24, 42, 73, 330
SetI	ASST	9 cut(s)	78, 105, 157, 162, 222, 249, 399, 437, 511
SfaNI	GCATC	2 cut(s)	124, 487
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	205
Sfr274I	CTCGAG	2 cut(s)	95, 521
SgrAI	CRCCGGYG	1 cut(s)	116
SlaI	CTCGAG	2 cut(s)	95, 521
SmlI	CTYRAG	2 cut(s)	95, 521
SmoI	CTYRAG	2 cut(s)	95, 521
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	383
SsiI	CCGC	2 cut(s)	9, 579
SspDI	GGCGCC	1 cut(s)	203
StyD4I	CCNGG	6 cut(s)	65, 72, 206, 321, 332, 453
TaaI	ACNGT	3 cut(s)	214, 267, 319
TaqI	TCGA	4 cut(s)	96, 144, 171, 522
TasI	AATT	1 cut(s)	383
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	168, 184, 411, 638
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	2 cut(s)	194, 370
TseI	GCWGC	5 cut(s)	304, 506, 509, 587, 629
TspDTI	ATGAA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	194, 370
Van91I	CCANNNNNTGG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	2 cut(s)	95, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.