Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

3798310 .. 3801820

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G054200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCGAGCGCCGATGCCGAGCACAGAGAAGACGAGGAGGCCCCACTAGCCGGCGACGACGAGGACACCGGAGCTCAGGTCGCTCCGATCGTCAGGCTCGAGGAGGTCGCCGTCACCACCGGTGAGGAAGACGAAGACGCCATCCTCGATCTGAAAGCGAAGCTATACCGATTTGATAAAGACGGTAACCAATGGAAAGAGCGAGGTGCTGGTACTGTCAAGCTTCTTAAGCACAATAAGACTGGCAAGGTCCGCCTTGTTATGCGACAGTCCAAAACCCTAAAGATCTGCGCCAATCACCTCGTTCTACCGAAGATGACAGTTCAGGAGCATGCCGGTAATGAGAAGTCATCTGTTTGGCACGCAACTGATTTTGCTGATGGGGAATTGAAGGAGGAGCTTTTCTGCATTAGATTCGCTTCAATTGAGAATAACAGATTGTTCATGGAAAAGTTTCAAGAAATTGCTGAATCCTTAAGTACAGAAGAAGAAAATGAAGATGCTACAGAGGCTGCTGGGCTTCTCAAGAATTTGAGTGTTGAAGAGAGAAAGACCAAGGAGAAAGCTGAGGAAGAGGCACCTGCTGCCACTAAGAGTGGTACCGTAAAAGAAGATGCACCTGCTGAGGAGAAAGTAGAGGAGAAAGCAGAGGGGAAGGTACCAGCTGCAGCTGAGGAGGAGAAGAAAGACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

232

Amino Acids

25.63

Weight (kDa)

4.74

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	589, 628
Acc36I	ACCTGC	2 cut(s)	589, 628
Acc65I	GGTACC	2 cut(s)	599, 658
AccB1I	GGYRCC	3 cut(s)	577, 599, 658
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	4 cut(s)	214, 481, 601, 660
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	2 cut(s)	227, 475
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	391, 423, 458, 542
AluBI	AGCT	7 cut(s)	74, 163, 223, 400, 566, 665, 671
AluI	AGCT	7 cut(s)	74, 163, 223, 400, 566, 665, 671
Alw21I	GWGCWC	2 cut(s)	24, 76
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	4 cut(s)	512, 584, 665, 668
ApoI	RAATTY	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	453
Asp718I	GGTACC	2 cut(s)	599, 658
AspLEI	GCGC	2 cut(s)	11, 293
AspS9I	GGNCC	2 cut(s)	40, 250
AsuHPI	GGTGA	3 cut(s)	106, 134, 290
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	250
BanI	GGYRCC	3 cut(s)	577, 599, 658
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	3 cut(s)	36, 135, 141
Bbv12I	GWGCWC	2 cut(s)	24, 76
BbvCI	CCTCAGC	3 cut(s)	567, 624, 672
BbvI	GCAGC	4 cut(s)	499, 571, 652, 680
BccI	CCATC	2 cut(s)	149, 374
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	504, 666
BfoI	RGCGCY	1 cut(s)	12
BfrI	CTTAAG	2 cut(s)	227, 475
BfuAI	ACCTGC	2 cut(s)	589, 628
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	4 cut(s)	513, 585, 666, 669
BlsI	GCNGC	4 cut(s)	514, 586, 667, 670
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	40, 250
BmiI	GGNNCC	4 cut(s)	42, 579, 601, 660
BmsI	GCATC	3 cut(s)	4, 490, 604
BpiI	GAAGAC	3 cut(s)	36, 135, 141
Bpu10I	CCTNAGC	4 cut(s)	75, 567, 624, 672
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	2 cut(s)	68, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	3 cut(s)	50, 119, 335
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	4 cut(s)	89, 558, 615, 663
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	7 cut(s)	50, 116, 410, 641, 653, 689, 692
BseXI	GCAGC	4 cut(s)	499, 571, 652, 680
BseYI	CCCAGC	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	3 cut(s)	577, 599, 658
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	24, 76
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	51, 69, 120, 336
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	24, 76
Bsp143I	GATC	3 cut(s)	87, 148, 285
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	4 cut(s)	88, 559, 616, 664
BspLI	GGNNCC	4 cut(s)	42, 579, 601, 660
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	589, 628
BspT107I	GGYRCC	3 cut(s)	577, 599, 658
BspTI	CTTAAG	2 cut(s)	227, 475
BsrFI	RCCGGY	3 cut(s)	50, 119, 335
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	3 cut(s)	50, 119, 335
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	3 cut(s)	87, 148, 285
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	5 cut(s)	185, 217, 270, 322, 604
Bst6I	CTCTTC	2 cut(s)	537, 567
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	2 cut(s)	227, 475
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	52, 333, 363
BstDEI	CTNAG	5 cut(s)	75, 567, 591, 624, 672
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 293
BstKTI	GATC	3 cut(s)	90, 151, 288
BstMBI	GATC	3 cut(s)	87, 148, 285
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 80, 229, 252, 509, 584
BstNSI	RCATGY	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	185
BstSFI	CTRYAG	2 cut(s)	504, 666
BstV1I	GCAGC	4 cut(s)	499, 571, 652, 680
BstV2I	GAAGAC	3 cut(s)	36, 135, 141
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	141
BveI	ACCTGC	2 cut(s)	589, 628
Cac8I	GCNNGC	3 cut(s)	52, 333, 363
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	11, 293
Cfr10I	RCCGGY	3 cut(s)	50, 119, 335
Cfr13I	GGNCC	2 cut(s)	40, 250
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	213, 480, 600, 659
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	2 cut(s)	332, 445
CviQI	GTAC	4 cut(s)	213, 480, 600, 659
DdeI	CTNAG	5 cut(s)	75, 567, 591, 624, 672
DpnI	GATC	3 cut(s)	89, 150, 287
DpnII	GATC	3 cut(s)	87, 148, 285
Eam1104I	CTCTTC	2 cut(s)	537, 567
EarI	CTCTTC	2 cut(s)	537, 567
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	2 cut(s)	335, 448
FaiI	YATR	5 cut(s)	166, 263, 333, 446, 694
FatI	CATG	2 cut(s)	331, 444
Fnu4HI	GCNGC	4 cut(s)	513, 585, 666, 669
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	513, 585, 666, 669
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	2 cut(s)	10, 292
GluI	GCNGC	4 cut(s)	513, 585, 666, 669
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	4 cut(s)	51, 69, 120, 336
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	11, 293
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	335, 448
Hin6I	GCGC	2 cut(s)	9, 291
HinP1I	GCGC	2 cut(s)	9, 291
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	414, 470
HpaII	CCGG	4 cut(s)	51, 69, 120, 336
HphI	GGTGA	3 cut(s)	106, 134, 290
Hpy188I	TCNGA	2 cut(s)	87, 153
Hpy188III	TCNNGA	3 cut(s)	326, 458, 526
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	2 cut(s)	385, 649
HpyCH4III	ACNGT	5 cut(s)	185, 217, 270, 322, 604
HpyCH4V	TGCA	3 cut(s)	408, 617, 668
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 80, 229, 252, 509, 584
HpyF3I	CTNAG	5 cut(s)	75, 567, 591, 624, 672
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	335, 448
HspAI	GCGC	2 cut(s)	9, 291
KpnI	GGTACC	2 cut(s)	603, 662
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	87, 148, 285
LmnI	GCTCC	4 cut(s)	71, 88, 328, 397
Lsp1109I	GCAGC	4 cut(s)	499, 571, 652, 680
LweI	GCATC	3 cut(s)	4, 490, 604
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	112, 185
MalI	GATC	3 cut(s)	89, 150, 287
MboI	GATC	3 cut(s)	87, 148, 285
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	24, 76
MluCI	AATT	4 cut(s)	386, 423, 462, 529
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	228, 476
MspA1I	CMGCKG	2 cut(s)	665, 671
MspCI	CTTAAG	2 cut(s)	227, 475
MspI	CCGG	4 cut(s)	51, 69, 120, 336
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	6 cut(s)	47, 80, 229, 252, 509, 584
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	87, 148, 285
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	335, 448
NlaIV	GGNNCC	4 cut(s)	42, 579, 601, 660
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	2 cut(s)	589, 628
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 96, 144
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	414, 470
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	514, 586, 667, 670
Ple19I	CGATCG	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	76
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	515
PspN4I	GGNNCC	4 cut(s)	42, 579, 601, 660
PspPI	GGNCC	2 cut(s)	40, 250
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	90
PvuII	CAGCTG	2 cut(s)	665, 671
RsaI	GTAC	4 cut(s)	214, 481, 601, 660
RsaNI	GTAC	4 cut(s)	213, 480, 600, 659
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	228, 476
SatI	GCNGC	4 cut(s)	513, 585, 666, 669
Sau3AI	GATC	3 cut(s)	87, 148, 285
Sau96I	GGNCC	2 cut(s)	40, 250
SduI	GDGCHC	2 cut(s)	24, 76
SfaNI	GCATC	3 cut(s)	4, 490, 604
SfcI	CTRYAG	2 cut(s)	504, 666
Sfr274I	CTCGAG	1 cut(s)	98
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	4 cut(s)	98, 227, 475, 524
SmoI	CTYRAG	4 cut(s)	98, 227, 475, 524
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	4 cut(s)	386, 423, 462, 529
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	5 cut(s)	185, 217, 270, 322, 604
TaqI	TCGA	3 cut(s)	5, 99, 147
TasI	AATT	4 cut(s)	386, 423, 462, 529
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	414, 470
Tru1I	TTAA	2 cut(s)	228, 476
Tru9I	TTAA	2 cut(s)	228, 476
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	4 cut(s)	512, 584, 665, 668
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	433, 510
Vha464I	CTTAAG	2 cut(s)	227, 475
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.