Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

23680063 .. 23681935

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGAGCACTGAGCCAGAGCGTGAGAACCGTGAAGATGAAACCGAAGTCAACGAAGATGAAGACACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTGAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTGAAGTTATTGAAGCATAAGGAAACTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCATTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGAATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAGAATCTTTCGGTTGAGGAAAATATAAGTGAGGAGAAAGCCAAGGAAGCAGAAGAGAAAGAGCCTGCAAAGGAAGATAAAGAAACAAAAAAGGAGAAGGTAGAAGAAGAGAAGAAAACAGAGGCAAGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

219

Amino Acids

24.72

Weight (kDa)

4.71

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	38 - 155	1e-38	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	101, 229, 391
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	5 cut(s)	74, 83, 209, 400, 467
AluI	AGCT	5 cut(s)	74, 83, 209, 400, 467
Alw21I	GWGCWC	3 cut(s)	11, 76, 497
Alw26I	GTCTC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	106, 290
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	69, 141
Bbv12I	GWGCWC	3 cut(s)	11, 76, 497
BbvI	GCAGC	1 cut(s)	499
BceAI	ACGGC	2 cut(s)	125, 397
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	69, 141
Bpu10I	CCTNAGC	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	498, 499, 567
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	498, 499, 567
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	219, 572
BseXI	GCAGC	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	11, 76, 497
BsiSI	CCGG	2 cut(s)	69, 120
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	408
Bsp1286I	GDGCHC	3 cut(s)	11, 76, 497
Bsp143I	GATC	3 cut(s)	87, 148, 285
BspCNI	CTCAG	2 cut(s)	4, 88
BspDI	ATCGAT	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	498, 499, 567
BssMI	GATC	3 cut(s)	87, 148, 285
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	32, 217
Bst6I	CTCTTC	3 cut(s)	96, 573, 627
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	5 cut(s)	7, 363, 476, 591, 652
BstDEI	CTNAG	2 cut(s)	12, 75
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	90, 151, 288
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	87, 148, 285
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 501, 572
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	69, 141
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	9, 456
Cac8I	GCNNGC	5 cut(s)	7, 363, 476, 591, 652
Cfr10I	RCCGGY	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	12, 75
DpnI	GATC	3 cut(s)	89, 150, 287
DpnII	GATC	3 cut(s)	87, 148, 285
Eam1104I	CTCTTC	3 cut(s)	96, 573, 627
EarI	CTCTTC	3 cut(s)	96, 573, 627
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	567
FaiI	YATR	6 cut(s)	234, 263, 333, 358, 446, 551
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 384, 416
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	2 cut(s)	69, 120
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	171, 529
HpaII	CCGG	2 cut(s)	69, 120
HphI	GGTGA	2 cut(s)	106, 290
Hpy166II	GTNNAC	2 cut(s)	52, 456
Hpy188I	TCNGA	3 cut(s)	87, 153, 379
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	52, 456
Hpy99I	CGWCG	2 cut(s)	383, 509
HpyAV	CCTTC	3 cut(s)	176, 190, 616
HpyCH4III	ACNGT	2 cut(s)	32, 217
HpyCH4V	TGCA	4 cut(s)	110, 408, 435, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 501, 572
HpyF3I	CTNAG	2 cut(s)	12, 75
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	87, 148, 285
LmnI	GCTCC	3 cut(s)	71, 88, 206
Lsp1109I	GCAGC	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	89, 150, 287
MboI	GATC	3 cut(s)	87, 148, 285
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	3 cut(s)	11, 76, 497
MluCI	AATT	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	97, 155, 197, 311, 502, 535, 550, 640
MseI	TTAA	2 cut(s)	521, 658
MspI	CCGG	2 cut(s)	69, 120
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	80, 501, 572
NdeII	GATC	3 cut(s)	87, 148, 285
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	112
PasI	CCCWGGG	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	171, 529
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	514
Ple19I	CGATCG	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	521, 658
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	3 cut(s)	87, 148, 285
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	3 cut(s)	11, 76, 497
SetI	ASST	9 cut(s)	76, 81, 85, 108, 211, 303, 402, 469, 627
SgrAI	CRCCGGYG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	430
SstI	GAGCTC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	32, 217
TaqI	TCGA	5 cut(s)	147, 158, 169, 174, 412
TasI	AATT	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	171, 529
Tru1I	TTAA	2 cut(s)	521, 658
Tru9I	TTAA	2 cut(s)	521, 658
TscAI	CASTG	2 cut(s)	16, 463
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	54, 75, 147, 357
TspRI	CASTG	2 cut(s)	16, 463
Tth111I	GACNNNGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.