Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Forward (+)

78880582 .. 78883284

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG460700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGACCGCCGACGCCGAGCACAGAGAAGAAGAGGAGCCCCTCGCCGGAGATGACGAGGACACCGGAGCCCAGGTCGCCCCGATCGTCAGGCTCGAGGAGGTCGCCGTCACCACCGGTGAAGAGAACGAGGATGCTGTCCTCGATCTGAAAGCTAAGCTGTACCGATTTGATAAGGATGGGAATCAGTGGAAAGAGCGAGGTGCTGGCACTGTGAAGCTTCTGAAGCACAAGGAGTCCGGCAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTAAAGATCTGCGCCAATCATCTTGTTCTGCCTAAGATGACGGTTCAGGAGCACGCCGGGAATGAGAAGTCATGTGTGTGGCACGCTACTGACTTTGCTGATGGTGAATTGAAGGAAGAGCTTTTCTGCATTAGATTCGCTTCGATTGAGAGTGAGTTTCCTTTGATCTACTTTACCTTTTCGCATCAATTTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

5.08

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	37 - 142	2.4e-38	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	155, 160, 220, 397
AluI	AGCT	4 cut(s)	155, 160, 220, 397
Alw21I	GWGCWC	2 cut(s)	24, 330
Ama87I	CYCGRG	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	470
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	103, 131, 392
AvaI	CYCGRG	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	42, 73
Bbv12I	GWGCWC	2 cut(s)	24, 330
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	173, 371
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	471
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	74, 334
BmeT110I	CYCGRG	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	39, 70
BmrFI	CCNGG	2 cut(s)	74, 334
BmsI	GCATC	2 cut(s)	124, 469
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	65, 116
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	139, 184
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	50, 113
BseXI	GCAGC	1 cut(s)	457
Bsh1285I	CGRYCG	2 cut(s)	9, 87
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	2 cut(s)	9, 87
BsiHKAI	GWGCWC	2 cut(s)	24, 330
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	5 cut(s)	48, 66, 117, 240, 333
BslI	CCNNNNNNNGG	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	4 cut(s)	24, 42, 73, 330
Bsp143I	GATC	4 cut(s)	84, 145, 282, 441
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	39, 70
BspQI	GCTCTTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	4 cut(s)	84, 145, 282, 441
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	214, 319
Bst6I	CTCTTC	3 cut(s)	27, 117, 387
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	208, 330, 360
BstDEI	CTNAG	2 cut(s)	156, 309
BstF5I	GGATG	2 cut(s)	139, 184
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	87, 148, 285, 444
BstMBI	GATC	4 cut(s)	84, 145, 282, 441
BstMCI	CGRYCG	2 cut(s)	9, 87
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 226, 249
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 332
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	139, 184
BtsIMutI	CAGTG	2 cut(s)	194, 210
Cac8I	GCNNGC	3 cut(s)	208, 330, 360
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	116
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	7 cut(s)	40, 71, 94, 155, 160, 220, 397
CviKI_1	RGCY	7 cut(s)	40, 71, 94, 155, 160, 220, 397
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	156, 309
DpnI	GATC	4 cut(s)	86, 147, 284, 443
DpnII	GATC	4 cut(s)	84, 145, 282, 441
Eam1104I	CTCTTC	3 cut(s)	27, 117, 387
EarI	CTCTTC	3 cut(s)	27, 117, 387
Eco24I	GRGCYC	2 cut(s)	42, 73
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	42, 73
FaeI	CATG	1 cut(s)	351
FaiI	YATR	2 cut(s)	260, 349
FatI	CATG	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	146, 191
FriOI	GRGCYC	2 cut(s)	42, 73
Fsp4HI	GCNGC	1 cut(s)	471
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	471
HapII	CCGG	5 cut(s)	48, 66, 117, 240, 333
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	184, 236, 411
HpaII	CCGG	5 cut(s)	48, 66, 117, 240, 333
HphI	GGTGA	3 cut(s)	103, 131, 392
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	150, 225
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	2 cut(s)	214, 319
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 226, 249
HpyF3I	CTNAG	2 cut(s)	156, 309
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	84, 145, 282, 441
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	37, 68, 325
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	124, 469
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	86, 147, 284, 443
MboI	GATC	4 cut(s)	84, 145, 282, 441
MboII	GAAGA	4 cut(s)	41, 44, 134, 404
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	4 cut(s)	24, 42, 73, 330
MluCI	AATT	2 cut(s)	383, 464
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	28, 52, 53, 91, 94, 124, 152, 194, 255
MslI	CAYNNNNRTG	1 cut(s)	352
MspI	CCGG	5 cut(s)	48, 66, 117, 240, 333
MspR9I	CCNGG	2 cut(s)	74, 334
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	77, 226, 249
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	84, 145, 282, 441
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	2 cut(s)	39, 70
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PfeI	GAWTC	2 cut(s)	184, 411
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	472
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	39, 70
PspXI	VCTCGAGB	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	387
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	84, 145, 282, 441
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	74, 334
SduI	GDGCHC	4 cut(s)	24, 42, 73, 330
SetI	ASST	9 cut(s)	78, 105, 157, 162, 205, 222, 249, 399, 455
SfaNI	GCATC	2 cut(s)	124, 469
Sfr274I	CTCGAG	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	383, 464
SsiI	CCGC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	72, 332
TaaI	ACNGT	2 cut(s)	214, 319
TaqI	TCGA	4 cut(s)	5, 96, 144, 419
TasI	AATT	2 cut(s)	383, 464
TfiI	GAWTC	2 cut(s)	184, 411
TscAI	CASTG	2 cut(s)	194, 217
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	109
TspRI	CASTG	2 cut(s)	194, 217
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.