Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007961.1

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

84656 .. 87127

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007961.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgtcgaccgccgacgccgagcacagagaagaagaggagcccctcgccggagatgacgaggacaccggagcccaggtcgccccgatcgtcaggctcgaggaggtcgccgtcaccaccggtgaagagaacgaagatgctgtcctcgatctgtacgtttctgccgacgccgagcacagagaagaagaggagcccctcgccggagatgacgaggacaccggagcccaggtcgccccgatcgtcaggctcgaggaggtcgccgtcaccaccgggtttttttctggttttggtaaggaggtcgccgtcaccaccggtgaagagaacgaagatgctgtcctcgatctgaaagctaagctgtaccgatttgataaggatgggaatcagtggaaagagcgaggtgctggcactgtgaagcttctgaagcacaaagagtccggcaaggttcgccttgttatgaggcagtctaaaaccctaaagatctgcgccaatcatcttggttattctaaagctaagctgtaccgatttgataaggatgggaatcagtggaaagagcgaggtgctggcactgtgaagcttctgaagcacaaggagtccggcaaggttcgccttgttatgaggcagtctaaaaccctaaagatctgcgccaatcatcttgttctgcctaagatgacggttcaggagcacgccgggaatgagaagtcttgtgtgtggcacgctactgactttgctgatggtgaattgaaggaagagcttttctgcattagattcgcttcgattgagaataacaggttgttcatggaaaagttccaggaagttgctgagtcccaagagcctgaagaagaaaatgaagatgctagtgcagctgctgggcttctcgagaatttgaaggttgaggagaaagagactaagaccgaaaagaaagatgaggaagcagcacctgctgaagtcaaggaggaggagaaggacagtaagagtgataaggctggagaatccacttcctcaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

334

Amino Acids

37.16

Weight (kDa)

4.81

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	943
Acc36I	ACCTGC	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	877
AcuI	CTGAAG	4 cut(s)	437, 596, 852, 960
AcyI	GRCGYC	2 cut(s)	15, 165
AfaI	GTAC	3 cut(s)	152, 356, 515
AfiI	CCNNNNNNNGG	2 cut(s)	47, 197
AgeI	ACCGGT	2 cut(s)	116, 308
AgsI	TTSAA	2 cut(s)	739, 883
AjnI	CCWGG	3 cut(s)	72, 222, 804
AluBI	AGCT	8 cut(s)	347, 352, 412, 506, 511, 571, 748, 860
AluI	AGCT	8 cut(s)	347, 352, 412, 506, 511, 571, 748, 860
Alw21I	GWGCWC	3 cut(s)	24, 174, 681
Alw26I	GTCTC	1 cut(s)	893
AlwNI	CAGNNNCTG	2 cut(s)	863, 935
Ama87I	CYCGRG	3 cut(s)	95, 245, 872
ApeKI	GCWGC	3 cut(s)	857, 860, 929
ApoI	RAATTY	1 cut(s)	877
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 315, 347
AsiGI	ACCGGT	2 cut(s)	116, 308
AspLEI	GCGC	2 cut(s)	482, 641
AsuC2I	CCSGG	2 cut(s)	268, 685
AsuHPI	GGTGA	6 cut(s)	103, 131, 253, 295, 323, 743
AvaI	CYCGRG	3 cut(s)	95, 245, 872
BanII	GRGCYC	4 cut(s)	42, 73, 192, 223
Bbv12I	GWGCWC	3 cut(s)	24, 174, 681
BbvI	GCAGC	3 cut(s)	847, 869, 941
BccI	CCATC	3 cut(s)	365, 524, 722
BceAI	ACGGC	3 cut(s)	92, 242, 284
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	3 cut(s)	74, 224, 806
BcnI	CCSGG	2 cut(s)	268, 685
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	943
BglII	AGATCT	2 cut(s)	474, 633
BisI	GCNGC	3 cut(s)	858, 861, 930
BlpI	GCTNAGC	2 cut(s)	348, 507
BlsI	GCNGC	3 cut(s)	859, 862, 931
Bme1390I	CCNGG	5 cut(s)	74, 224, 268, 685, 806
BmeT110I	CYCGRG	3 cut(s)	95, 245, 872
BmiI	GGNNCC	4 cut(s)	39, 70, 189, 220
BmrFI	CCNGG	5 cut(s)	74, 224, 268, 685, 806
BmsI	GCATC	3 cut(s)	124, 316, 838
BpmI	CTGGAG	1 cut(s)	1002
Bpu1102I	GCTNAGC	2 cut(s)	348, 507
BpuMI	CCSGG	2 cut(s)	268, 685
BsaBI	GATNNNNATC	2 cut(s)	375, 534
BsaHI	GRCGYC	2 cut(s)	15, 165
BsaJI	CCNNGG	2 cut(s)	72, 222
BsaWI	WCCGGW	4 cut(s)	65, 116, 215, 308
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 197
Bse118I	RCCGGY	2 cut(s)	116, 308
Bse8I	GATNNNNATC	2 cut(s)	375, 534
BseBI	CCWGG	3 cut(s)	74, 224, 806
BseDI	CCNNGG	2 cut(s)	72, 222
BseGI	GGATG	2 cut(s)	376, 535
BseJI	GATNNNNATC	2 cut(s)	375, 534
BseLI	CCNNNNNNNGG	2 cut(s)	47, 197
BseMII	CTCAG	1 cut(s)	807
BseRI	GAGGAG	7 cut(s)	50, 113, 200, 263, 905, 965, 968
BseXI	GCAGC	3 cut(s)	847, 869, 941
BseYI	CCCAGC	1 cut(s)	863
BsgI	GTGCAG	1 cut(s)	876
Bsh1285I	CGRYCG	3 cut(s)	9, 87, 237
BshTI	ACCGGT	2 cut(s)	116, 308
BsiEI	CGRYCG	3 cut(s)	9, 87, 237
BsiHKAI	GWGCWC	3 cut(s)	24, 174, 681
BsiHKCI	CYCGRG	3 cut(s)	95, 245, 872
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	2 cut(s)	47, 197
BsmAI	GTCTC	1 cut(s)	893
BsmFI	GGGAC	1 cut(s)	805
BsoBI	CYCGRG	3 cut(s)	95, 245, 872
Bsp1286I	GDGCHC	7 cut(s)	24, 42, 73, 174, 192, 223, 681
Bsp143I	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
Bsp1720I	GCTNAGC	2 cut(s)	348, 507
BspACI	CCGC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	39, 70, 189, 220
BspMI	ACCTGC	1 cut(s)	943
BspQI	GCTCTTC	1 cut(s)	738
BsrFI	RCCGGY	2 cut(s)	116, 308
BssAI	RCCGGY	2 cut(s)	116, 308
BssECI	CCNNGG	2 cut(s)	72, 222
BssMI	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
BssNI	GRCGYC	2 cut(s)	15, 165
Bst2UI	CCWGG	3 cut(s)	74, 224, 806
Bst4CI	ACNGT	4 cut(s)	406, 565, 670, 965
Bst6I	CTCTTC	5 cut(s)	27, 117, 177, 309, 738
BstACI	GRCGYC	2 cut(s)	15, 165
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	4 cut(s)	400, 559, 681, 711
BstDEI	CTNAG	5 cut(s)	348, 507, 660, 816, 903
BstF5I	GGATG	2 cut(s)	376, 535
BstHHI	GCGC	2 cut(s)	482, 641
BstKTI	GATC	6 cut(s)	87, 148, 237, 340, 477, 636
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
BstMCI	CGRYCG	3 cut(s)	9, 87, 237
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 227, 418, 441, 577, 600, 857, 935
BstNI	CCWGG	3 cut(s)	74, 224, 806
BstSCI	CCNGG	5 cut(s)	72, 222, 266, 683, 804
BstV1I	GCAGC	3 cut(s)	847, 869, 941
BstX2I	RGATCY	2 cut(s)	474, 633
BstYI	RGATCY	2 cut(s)	474, 633
BtsCI	GGATG	2 cut(s)	376, 535
BtsIMutI	CAGTG	4 cut(s)	386, 402, 545, 561
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	4 cut(s)	400, 559, 681, 711
CaiI	CAGNNNCTG	2 cut(s)	863, 935
CfoI	GCGC	2 cut(s)	482, 641
Cfr10I	RCCGGY	2 cut(s)	116, 308
CseI	GACGC	2 cut(s)	23, 173
Csp6I	GTAC	3 cut(s)	151, 355, 514
CspAI	ACCGGT	2 cut(s)	116, 308
CviAII	CATG	1 cut(s)	793
CviQI	GTAC	3 cut(s)	151, 355, 514
DdeI	CTNAG	5 cut(s)	348, 507, 660, 816, 903
DpnI	GATC	6 cut(s)	86, 147, 236, 339, 476, 635
DpnII	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
Eam1104I	CTCTTC	5 cut(s)	27, 117, 177, 309, 738
EarI	CTCTTC	5 cut(s)	27, 117, 177, 309, 738
Eco24I	GRGCYC	4 cut(s)	42, 73, 192, 223
Eco57I	CTGAAG	4 cut(s)	437, 596, 852, 960
Eco88I	CYCGRG	3 cut(s)	95, 245, 872
EcoRII	CCWGG	3 cut(s)	72, 222, 804
EcoT38I	GRGCYC	4 cut(s)	42, 73, 192, 223
FaeI	CATG	1 cut(s)	796
FaiI	YATR	3 cut(s)	452, 611, 794
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	858, 861, 930
FokI	GGATG	2 cut(s)	383, 542
FriOI	GRGCYC	4 cut(s)	42, 73, 192, 223
Fsp4HI	GCNGC	3 cut(s)	858, 861, 930
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	2 cut(s)	481, 640
GluI	GCNGC	3 cut(s)	858, 861, 930
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	1002
HgaI	GACGC	2 cut(s)	23, 173
HhaI	GCGC	2 cut(s)	482, 641
Hin1I	GRCGYC	2 cut(s)	15, 165
Hin1II	CATG	1 cut(s)	796
Hin6I	GCGC	2 cut(s)	480, 639
HinP1I	GCGC	2 cut(s)	480, 639
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	410, 569
HinfI	GANTC	7 cut(s)	376, 428, 535, 587, 762, 818, 986
HphI	GGTGA	6 cut(s)	103, 131, 253, 295, 323, 743
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	342, 417, 576
Hpy188III	TCNNGA	3 cut(s)	674, 872, 874
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	17, 167
HpyAV	CCTTC	3 cut(s)	733, 877, 952
HpyCH4III	ACNGT	4 cut(s)	406, 565, 670, 965
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	756, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 227, 418, 441, 577, 600, 857, 935
HpyF3I	CTNAG	5 cut(s)	348, 507, 660, 816, 903
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	15, 165
Hsp92II	CATG	1 cut(s)	796
HspAI	GCGC	2 cut(s)	480, 639
Kzo9I	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	5 cut(s)	37, 68, 187, 218, 676
Lsp1109I	GCAGC	3 cut(s)	847, 869, 941
LweI	GCATC	3 cut(s)	124, 316, 838
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	109, 259, 301
MalI	GATC	6 cut(s)	86, 147, 236, 339, 476, 635
MboI	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
MflI	RGATCY	2 cut(s)	474, 633
MhlI	GDGCHC	7 cut(s)	24, 42, 73, 174, 192, 223, 681
MluCI	AATT	2 cut(s)	734, 877
MlyI	GAGTC	3 cut(s)	437, 596, 827
MspA1I	CMGCKG	1 cut(s)	860
MspR9I	CCNGG	5 cut(s)	74, 224, 268, 685, 806
MvaI	CCWGG	3 cut(s)	74, 224, 806
MwoI	GCNNNNNNNGC	8 cut(s)	77, 227, 418, 441, 577, 600, 857, 935
NciI	CCSGG	2 cut(s)	268, 685
NdeII	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
NlaIII	CATG	1 cut(s)	796
NlaIV	GGNNCC	4 cut(s)	39, 70, 189, 220
NmeAIII	GCCGAG	2 cut(s)	43, 193
NmuCI	GTSAC	3 cut(s)	109, 259, 301
PaeR7I	CTCGAG	3 cut(s)	95, 245, 872
PaqCI	CACCTGC	1 cut(s)	943
PciSI	GCTCTTC	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	6 cut(s)	84, 93, 150, 159, 234, 243
PfeI	GAWTC	4 cut(s)	376, 535, 762, 986
PfoI	TCCNGGA	1 cut(s)	804
PinAI	ACCGGT	2 cut(s)	116, 308
PkrI	GCNGC	3 cut(s)	859, 862, 931
Ple19I	CGATCG	2 cut(s)	87, 237
PleI	GAGTC	3 cut(s)	436, 595, 826
PpsI	GAGTC	3 cut(s)	436, 595, 826
Psp6I	CCWGG	3 cut(s)	72, 222, 804
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	3 cut(s)	72, 222, 804
PspN4I	GGNNCC	4 cut(s)	39, 70, 189, 220
PspXI	VCTCGAGB	2 cut(s)	95, 245
PstNI	CAGNNNCTG	2 cut(s)	863, 935
PsuI	RGATCY	2 cut(s)	474, 633
PvuI	CGATCG	2 cut(s)	87, 237
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	3 cut(s)	152, 356, 515
RsaNI	GTAC	3 cut(s)	151, 355, 514
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	738
SatI	GCNGC	3 cut(s)	858, 861, 930
Sau3AI	GATC	6 cut(s)	84, 145, 234, 337, 474, 633
SchI	GAGTC	3 cut(s)	437, 596, 827
ScrFI	CCNGG	5 cut(s)	74, 224, 268, 685, 806
SduI	GDGCHC	7 cut(s)	24, 42, 73, 174, 192, 223, 681
SfaNI	GCATC	3 cut(s)	124, 316, 838
Sfr274I	CTCGAG	3 cut(s)	95, 245, 872
SgrAI	CRCCGGYG	2 cut(s)	116, 308
SlaI	CTCGAG	3 cut(s)	95, 245, 872
SmlI	CTYRAG	3 cut(s)	95, 245, 872
SmoI	CTYRAG	3 cut(s)	95, 245, 872
Sse9I	AATT	2 cut(s)	734, 877
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	5 cut(s)	72, 222, 266, 683, 804
TaaI	ACNGT	4 cut(s)	406, 565, 670, 965
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	7 cut(s)	5, 96, 144, 246, 336, 770, 873
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	2 cut(s)	734, 877
TfiI	GAWTC	4 cut(s)	376, 535, 762, 986
TscAI	CASTG	4 cut(s)	386, 409, 545, 568
TseFI	GTSAC	3 cut(s)	109, 259, 301
TseI	GCWGC	3 cut(s)	857, 860, 929
Tsp45I	GTSAC	3 cut(s)	109, 259, 301
TspDTI	ATGAA	2 cut(s)	781, 858
TspRI	CASTG	4 cut(s)	386, 409, 545, 568
XapI	RAATTY	1 cut(s)	877
XhoI	CTCGAG	3 cut(s)	95, 245, 872
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.