Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011965

Physical Location & Seq

Genomic Coordinates Reverse (-)

4460771 .. 4463505

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCGAGCGCCGATCCAGGGCACAGAGACGAGGAGGAGGCACCACTCGCCGGCGACGACGAGGACACCGGAGCTCAGGTCGCTCCGATCGTTCGGCTGGAGGAGGTCGCCGTCACCACCGGTGAGGAAGAGGAAGACGCCATCCTCGATCTGAAGGCGAAGCTTTACCGATTTGATAAAGACGGTAATCAATGGAAGGAGCGAGGTGCCGGCACTGTCAAGTTTCTCAAGCACAAGAAGACTGGAAAAGTCCGCCTTGTCATGCGGCAATCCAAAACCCTAAAGATCTGCGCCAATCATCTTGTTCTACCGAAGATGACAGTCCAGGAGCACGCAGGGAATGAGAAGTCCTGTGTTTGGCACGCAACCGATTTTGCTGATGGGGAATTGAAGGAGGAGCTTTTCTGCATTAGATTTGCTTCAATTGAAAATAACAAATTGTTCATGGAGAAGTTTCAAGAAGTTGCTGAATCCCAGAGTCCAGAAGAAGAAAGCAAAGAAGCCACTGAAGCTGCTGGGCTTCTCGATAAATTGAGTGTTGGGGAGAAGTCTCAGGCAGAGGCACCTGCTGCAGCTAAGAAGAGCGATGCAGTAAAAGAAGAATCACCTGCTGAGGAGAAGGCAGAAGAAAAGGCACCTGCTGCCAAGGAAGAGAAGAAAGACGATCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

225

Amino Acids

24.77

Weight (kDa)

4.87

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07140 AT2G30060 AT5G58590
fragaria_vesca	FvH4_3g39030
malus_domestica	MD03G1065200.v1.1 MD11G1069900.v1.1
prunus_persica	Prupe.6G054200_v2.0.a1
pyrus_communis	pycom03g05220 pycom11g05810
rosa_chinensis	RchiOBHm_Chr5g0070341
rosa_laevigata	RLG00000036126
rosa_multiflora	Rmu_sc0007961.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010840
rosa_rugosa	Rorug05G0405100
rosa_samantha	Rh5AG460700 Rh5BG479000 Rh5CG503200 Rh5DG490900
rosa_wichuraiana	Rw5G042940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	574, 616, 646
Acc36I	ACCTGC	3 cut(s)	574, 616, 646
AccB1I	GGYRCC	4 cut(s)	40, 206, 562, 634
AciI	CCGC	2 cut(s)	253, 265
AclWI	GGATC	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	173, 528
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	3 cut(s)	18, 50, 357
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	391, 423, 428, 458
AjnI	CCWGG	2 cut(s)	16, 324
AluBI	AGCT	5 cut(s)	74, 163, 400, 512, 575
AluI	AGCT	5 cut(s)	74, 163, 400, 512, 575
Alw21I	GWGCWC	2 cut(s)	76, 333
Alw26I	GTCTC	2 cut(s)	21, 555
AlwI	GGATC	1 cut(s)	8
ApeKI	GCWGC	4 cut(s)	512, 569, 572, 641
AsiGI	ACCGGT	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	11, 293
AsuHPI	GGTGA	3 cut(s)	106, 134, 597
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	4 cut(s)	40, 206, 562, 634
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	141, 245
Bbv12I	GWGCWC	2 cut(s)	76, 333
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	499, 556, 584, 628
BccI	CCATC	2 cut(s)	149, 374
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	18, 326
BcoDI	GTCTC	2 cut(s)	21, 555
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	3 cut(s)	574, 616, 646
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	5 cut(s)	266, 513, 570, 573, 642
BlsI	GCNGC	5 cut(s)	267, 514, 571, 574, 643
Bme1390I	CCNGG	2 cut(s)	18, 326
BmiI	GGNNCC	4 cut(s)	42, 208, 564, 636
BmrFI	CCNGG	2 cut(s)	18, 326
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	2 cut(s)	141, 245
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	2 cut(s)	75, 612
BpuEI	CTTGAG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	17, 645
BsaWI	WCCGGW	2 cut(s)	68, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 50, 357
Bse118I	RCCGGY	3 cut(s)	50, 119, 209
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	18, 326
BseDI	CCNNGG	2 cut(s)	17, 645
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	18, 50, 357
BseMII	CTCAG	3 cut(s)	89, 566, 603
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	5 cut(s)	47, 50, 116, 410, 629
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	499, 556, 584, 628
BseYI	CCCAGC	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	90
BshNI	GGYRCC	4 cut(s)	40, 206, 562, 634
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	76, 333
BsiSI	CCGG	4 cut(s)	51, 69, 120, 210
BslI	CCNNNNNNNGG	3 cut(s)	18, 50, 357
BsmAI	GTCTC	2 cut(s)	21, 555
BsmBI	CGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	3 cut(s)	24, 76, 333
Bsp143I	GATC	5 cut(s)	13, 87, 148, 285, 664
BspACI	CCGC	2 cut(s)	253, 265
BspCNI	CTCAG	3 cut(s)	88, 565, 604
BspLI	GGNNCC	4 cut(s)	42, 208, 564, 636
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	3 cut(s)	574, 616, 646
BspPI	GGATC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	575
BspT107I	GGYRCC	4 cut(s)	40, 206, 562, 634
BsrFI	RCCGGY	3 cut(s)	50, 119, 209
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	3 cut(s)	50, 119, 209
BssECI	CCNNGG	2 cut(s)	17, 645
BssMI	GATC	5 cut(s)	13, 87, 148, 285, 664
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	18, 326
Bst4CI	ACNGT	3 cut(s)	185, 217, 322
Bst6I	CTCTTC	3 cut(s)	123, 575, 645
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	569, 641
BstC8I	GCNNGC	4 cut(s)	52, 211, 333, 363
BstDEI	CTNAG	4 cut(s)	75, 552, 576, 612
BstF5I	GGATG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 293
BstKTI	GATC	5 cut(s)	16, 90, 151, 288, 667
BstMAI	GTCTC	2 cut(s)	21, 555
BstMBI	GATC	5 cut(s)	13, 87, 148, 285, 664
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 80, 509, 569, 641
BstNI	CCWGG	2 cut(s)	18, 326
BstSCI	CCNGG	2 cut(s)	16, 324
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	499, 556, 584, 628
BstV2I	GAAGAC	2 cut(s)	141, 245
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	213, 504
BveI	ACCTGC	3 cut(s)	574, 616, 646
Cac8I	GCNNGC	4 cut(s)	52, 211, 333, 363
CfoI	GCGC	2 cut(s)	11, 293
Cfr10I	RCCGGY	3 cut(s)	50, 119, 209
CseI	GACGC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	2 cut(s)	262, 445
CviJI	RGCY	8 cut(s)	74, 97, 163, 400, 503, 512, 520, 575
CviKI_1	RGCY	8 cut(s)	74, 97, 163, 400, 503, 512, 520, 575
DdeI	CTNAG	4 cut(s)	75, 552, 576, 612
DpnI	GATC	5 cut(s)	15, 89, 150, 287, 666
DpnII	GATC	5 cut(s)	13, 87, 148, 285, 664
Eam1104I	CTCTTC	3 cut(s)	123, 575, 645
EarI	CTCTTC	3 cut(s)	123, 575, 645
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	173, 528
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	16, 324
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	265, 448
FaiI	YATR	2 cut(s)	263, 446
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	2 cut(s)	261, 444
Fnu4HI	GCNGC	5 cut(s)	266, 513, 570, 573, 642
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	5 cut(s)	266, 513, 570, 573, 642
GlaI	GCGC	2 cut(s)	10, 292
GluI	GCNGC	5 cut(s)	266, 513, 570, 573, 642
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	4 cut(s)	51, 69, 120, 210
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	11, 293
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	265, 448
Hin6I	GCGC	2 cut(s)	9, 291
HinP1I	GCGC	2 cut(s)	9, 291
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	3 cut(s)	470, 478, 602
HpaII	CCGG	4 cut(s)	51, 69, 120, 210
HphI	GGTGA	3 cut(s)	106, 134, 597
Hpy188I	TCNGA	2 cut(s)	87, 153
Hpy188III	TCNNGA	4 cut(s)	458, 482, 524, 668
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	4 cut(s)	148, 190, 385, 613
HpyCH4III	ACNGT	3 cut(s)	185, 217, 322
HpyCH4V	TGCA	3 cut(s)	408, 572, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 80, 509, 569, 641
HpyF3I	CTNAG	4 cut(s)	75, 552, 576, 612
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	265, 448
HspAI	GCGC	2 cut(s)	9, 291
KroI	GCCGGC	2 cut(s)	50, 209
KroNI	GCCGGC	2 cut(s)	52, 211
Kzo9I	GATC	5 cut(s)	13, 87, 148, 285, 664
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	5 cut(s)	71, 88, 199, 328, 397
Lsp1109I	GCAGC	4 cut(s)	499, 556, 584, 628
LweI	GCATC	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	5 cut(s)	15, 89, 150, 287, 666
MboI	GATC	5 cut(s)	13, 87, 148, 285, 664
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	3 cut(s)	24, 76, 333
MluCI	AATT	4 cut(s)	386, 423, 437, 530
MlyI	GAGTC	1 cut(s)	487
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 209
MspI	CCGG	4 cut(s)	51, 69, 120, 210
MspR9I	CCNGG	2 cut(s)	18, 326
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	18, 326
MwoI	GCNNNNNNNGC	5 cut(s)	47, 80, 509, 569, 641
NaeI	GCCGGC	2 cut(s)	52, 211
NdeII	GATC	5 cut(s)	13, 87, 148, 285, 664
NgoMIV	GCCGGC	2 cut(s)	50, 209
NlaIII	CATG	2 cut(s)	265, 448
NlaIV	GGNNCC	4 cut(s)	42, 208, 564, 636
NmuCI	GTSAC	1 cut(s)	112
PaqCI	CACCTGC	3 cut(s)	574, 616, 646
PciSI	GCTCTTC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 87, 144
PdiI	GCCGGC	2 cut(s)	52, 211
PfeI	GAWTC	2 cut(s)	470, 602
PfoI	TCCNGGA	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	267, 514, 571, 574, 643
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	16, 324
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	16, 324
PspN4I	GGNNCC	4 cut(s)	42, 208, 564, 636
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	575
SatI	GCNGC	5 cut(s)	266, 513, 570, 573, 642
Sau3AI	GATC	5 cut(s)	13, 87, 148, 285, 664
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	18, 326
SduI	GDGCHC	3 cut(s)	24, 76, 333
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	570
SgrAI	CRCCGGYG	2 cut(s)	50, 119
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	386, 423, 437, 530
SsiI	CCGC	2 cut(s)	253, 265
SstI	GAGCTC	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	16, 324
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	3 cut(s)	185, 217, 322
TaqI	TCGA	3 cut(s)	5, 147, 525
TasI	AATT	4 cut(s)	386, 423, 437, 530
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	470, 602
TscAI	CASTG	2 cut(s)	220, 511
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	4 cut(s)	512, 569, 572, 641
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	2 cut(s)	220, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.