AT1G07280
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006116
Physical Location & Seq
Forward (+)
2238017 .. 2241471
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07280.2

Sequence Viewer

Length: 1659 bp
ATGGGAGTGAAAGTAGCAACAAGCTCCACCTTCCATCAATGGGTGGCTCATCCTATAGTTCATCATTCCTCTTCCCTTTCTCAAACCCTAGCTTCCTCCGCCGTTTCTTCTCCTTCAAGACGACGGATCATCGGAAACGACGGACGTTCTTCTCTGTCTTGTCGTTCCGTGATGCAGAGCCAGAGGCTTAATCCTTCTTCTCCCTTCGGCACTTCTTCGACAAATCTCCGTCACTCCAAGTCCTGTGAGCTCTGGGAATCAACAAAACGACCTAAAACACAGTTGATTCGCAGAGCTTTTAGCGCAAACGTCGATCCGTTTTCCGAGGAAGAGTTTGCGAAAAAGATGCAGGAGCTAACTCTCAAATTCCAAGTCTCTAACGAAGAAGAAGACAACGAATCGGATACACGCATTGACGATTACACTCGAAAGATGGACATAGTAGGAAGCCATAATAATTTCAGGTCAGATTCAATGGAACCGCCATGGCCAGAGATGGTGCAAATGTCAAACATCGAGAGGAAAGCAAACAGTGTAGATCTTCCTCTTTCGCTTAGGATCATAAAGAGAAAGTTACAGATGGAGGAAGGAGTTTTAAACCAAGTCGGAGAATCAGCTTGTTGCTCTGTTAAGAAAGCTTTCTCTTCAATGGTGTTTATGATTAGAGAACTTCAAAGCTTTACGTTACACATGAGAGAGCTTCTTCTCTTCGAAGATTTGCAAGGAATTCTTCATCGTGTGAGAAAAGAAATGCAAGCGTCGTTCGTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCTGTTATGATCCTTCTCGCTAATTTCACGGTTTACTCTATTGAGAGCAACTCTGCTTTAGCCGCCGCCGTAAGTCCCCCGACAACCCTCTCTTTCAGCTTCGAAACGACGGCGGAGATAAGTGAAACTCAAGAAACGAATCAGAAATTCGATTCTTCAATGGTTAAGACGTTCTCTGTTTCTTCTCCTTACGGGAAAACATCTTTTGTCGGTGGTGGCGGCGGGAACAATATACCACCGCCGGTACAAAGCGGAACAGATGGTGATGGATCTGATCAGTTTAGAAAATCTCAATTCTCATCATCGTCTCTGGGTGCAACAAGTGCGGATTCAGATGTATCTGTGTCAGGGCAAGAAGAGATCAGACTGTGGAATTCGATATTGGAGGAAACTGCGAAAATGGAAACGTTGGATCACGAGACGATGAAGGGGATGGTTTCTCCGGTGGAAGCTCGATTAGAAGCAGAAGAATCCATGGATTACTTCAAGACAGAGCTTCTTTACCAAACGGGATTGTCTCAGGAGCCTGGAAACGTTCTCCTTCTTGCTAATTACGCACAGTTTCTCTACCTTATCATTCATGACTACGACAGAGCGGAAAAGTATTTCAAGAGAGCAGCAAAAGCAGAGCCAGCGGACGCAGAGGCATTGAACAAATATGCGACGTTTCTGTGGAGAGCGAGAAACGATATTTGGAGAGCGGAGGAAACCTACTTAGAAGCGATCTCCGCTGATCCAACAAACTCAGTCTACTCCGCAAACTACGCACATTTCCTCTGGAACACCGGTGGTGATGAAACGTGTTTTCCTCTCGACGCTCCATCGCAACAGAACAACACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

552

Amino Acids

61.78

Weight (kDa)

5.29

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1409, 1514
AccI GTMKAC 1 cut(s) 1563
AclI AACGTT 2 cut(s) 1220, 1347
AclWI GGATC 7 cut(s) 134, 308, 566, 817, 1090, 1233, 1541
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 4 cut(s) 365, 726, 959, 1186
AfaI GTAC 1 cut(s) 1059
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 1613
AgeI ACCGGT 1 cut(s) 1598
AgsI TTSAA 9 cut(s) 117, 474, 648, 674, 779, 972, 1300, 1423, 1465
AjnI CCWGG 1 cut(s) 1339
AjuI GAANNNNNNNTTGG 4 cut(s) 1178, 1210, 1489, 1521
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 5 cut(s) 379, 817, 1125, 1226, 1335
AlwI GGATC 7 cut(s) 134, 308, 566, 817, 1090, 1233, 1541
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 1430
ApoI RAATTY 4 cut(s) 365, 726, 959, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
AsiGI ACCGGT 1 cut(s) 1598
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 1088, 1616
AsuII TTCGAA 2 cut(s) 711, 915
BalI TGGCCA 1 cut(s) 490
BanII GRGCYC 1 cut(s) 252
BauI CACGAG 1 cut(s) 1229
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 1442
BccI CCATC 9 cut(s) 42, 427, 490, 574, 802, 1067, 1073, 1240, 1642
BceAI ACGGC 3 cut(s) 86, 866, 939
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 1 cut(s) 1341
BciVI GTATCC 1 cut(s) 397
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 5 cut(s) 379, 817, 1125, 1226, 1335
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 54
BfuI GTATCC 1 cut(s) 397
BglII AGATCT 1 cut(s) 538
BisI GCNGC 4 cut(s) 876, 879, 1033, 1431
BlsI GCNGC 4 cut(s) 877, 880, 1034, 1432
Bme1390I CCNGG 1 cut(s) 1341
BmiI GGNNCC 2 cut(s) 480, 1338
BmrFI CCNGG 1 cut(s) 1341
BmsI GCATC 2 cut(s) 162, 336
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 848, 880
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 2 cut(s) 711, 915
BpuEI CTTGAG 1 cut(s) 927
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 324, 485, 1287
BsaWI WCCGGW 2 cut(s) 1255, 1598
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 2 cut(s) 1054, 1598
BseBI CCWGG 1 cut(s) 1341
BseDI CCNNGG 3 cut(s) 324, 485, 1287
BseGI GGATG 2 cut(s) 49, 1251
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 1346, 1572
BseXI GCAGC 1 cut(s) 1442
BshFI GGCC 1 cut(s) 490
BshTI ACCGGT 1 cut(s) 1598
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 1055, 1256, 1599
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 5 cut(s) 379, 817, 1125, 1226, 1335
BsmBI CGTCTC 2 cut(s) 1125, 1226
BsmFI GGGAC 1 cut(s) 873
BsnI GGCC 1 cut(s) 490
Bso31I GGTCTC 1 cut(s) 817
Bsp119I TTCGAA 2 cut(s) 711, 915
Bsp1286I GDGCHC 1 cut(s) 252
Bsp19I CCATGG 2 cut(s) 485, 1287
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 2 cut(s) 1345, 1571
BspHI TCATGA 1 cut(s) 1393
BspLI GGNNCC 2 cut(s) 480, 1338
BspPI GGATC 7 cut(s) 134, 308, 566, 817, 1090, 1233, 1541
BspT104I TTCGAA 2 cut(s) 711, 915
BspTNI GGTCTC 1 cut(s) 817
BsrBI CCGCTC 2 cut(s) 1409, 1514
BsrFI RCCGGY 2 cut(s) 1054, 1598
BssAI RCCGGY 2 cut(s) 1054, 1598
BssECI CCNNGG 3 cut(s) 324, 485, 1287
BssSI CACGAG 1 cut(s) 1229
BssT1I CCWWGG 2 cut(s) 485, 1287
Bst2BI CACGAG 1 cut(s) 1229
Bst2UI CCWGG 1 cut(s) 1341
Bst4CI ACNGT 5 cut(s) 282, 533, 844, 1182, 1374
Bst6I CTCTTC 5 cut(s) 76, 324, 649, 713, 1164
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstBI TTCGAA 2 cut(s) 711, 915
BstC8I GCNNGC 2 cut(s) 756, 1446
BstDEI CTNAG 4 cut(s) 554, 1332, 1528, 1558
BstDSI CCRYGG 2 cut(s) 485, 1287
BstF5I GGATG 2 cut(s) 49, 1251
BstHHI GCGC 1 cut(s) 305
BstMAI GTCTC 5 cut(s) 379, 817, 1125, 1226, 1335
BstMWI GCNNNNNNNGC 9 cut(s) 98, 302, 875, 1136, 1367, 1436, 1445, 1541, 1577
BstNI CCWGG 1 cut(s) 1341
BstSCI CCNGG 1 cut(s) 1339
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 1442
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 538, 1082
BstYI RGATCY 2 cut(s) 538, 1082
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 1 cut(s) 490
BtgI CCRYGG 2 cut(s) 485, 1287
BtgZI GCGATG 1 cut(s) 1620
BtsCI GGATG 2 cut(s) 49, 1251
BtsIMutI CAGTG 1 cut(s) 538
Cac8I GCNNGC 2 cut(s) 756, 1446
CciI TCATGA 1 cut(s) 1393
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 1054, 1598
CseI GACGC 3 cut(s) 747, 1460, 1637
Csp6I GTAC 1 cut(s) 1058
CspAI ACCGGT 1 cut(s) 1598
CviAII CATG 5 cut(s) 486, 691, 1288, 1394, 1656
CviQI GTAC 1 cut(s) 1058
DdeI CTNAG 4 cut(s) 554, 1332, 1528, 1558
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 5 cut(s) 76, 324, 649, 713, 1164
EarI CTCTTC 5 cut(s) 76, 324, 649, 713, 1164
EciI GGCGGA 2 cut(s) 88, 941
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 485, 1287
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRI GAATTC 2 cut(s) 726, 1186
EcoRII CCWGG 1 cut(s) 1339
EcoT14I CCWWGG 2 cut(s) 485, 1287
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 2 cut(s) 485, 1287
Esp3I CGTCTC 2 cut(s) 1125, 1226
FaeI CATG 5 cut(s) 489, 694, 1291, 1397, 1659
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 1 cut(s) 873
FatI CATG 5 cut(s) 485, 690, 1287, 1393, 1655
FauI CCCGC 1 cut(s) 1028
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 1 cut(s) 1563
Fnu4HI GCNGC 4 cut(s) 876, 879, 1033, 1431
FokI GGATG 2 cut(s) 36, 1258
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 4 cut(s) 876, 879, 1033, 1431
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 304
GluI GCNGC 4 cut(s) 876, 879, 1033, 1431
HaeIII GGCC 1 cut(s) 490
HapII CCGG 3 cut(s) 1055, 1256, 1599
HgaI GACGC 3 cut(s) 747, 1460, 1637
HhaI GCGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 489, 694, 1291, 1397, 1659
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 2 cut(s) 636, 676
HinfI GANTC 9 cut(s) 257, 286, 398, 470, 611, 952, 965, 1142, 1283
HpaII CCGG 3 cut(s) 1055, 1256, 1599
HphI GGTGA 2 cut(s) 1088, 1616
Hpy166II GTNNAC 2 cut(s) 847, 1564
Hpy188I TCNGA 9 cut(s) 134, 325, 403, 469, 608, 957, 1087, 1147, 1178
Hpy8I GTNNAC 2 cut(s) 847, 1564
Hpy99I CGWCG 7 cut(s) 126, 143, 314, 763, 925, 1480, 1631
HpyAV CCTTC 8 cut(s) 40, 123, 204, 214, 581, 836, 1234, 1364
HpyCH4III ACNGT 5 cut(s) 282, 533, 844, 1182, 1374
HpyCH4IV ACGT 8 cut(s) 145, 309, 683, 983, 1220, 1347, 1478, 1613
HpyCH4V TGCA 6 cut(s) 175, 349, 502, 721, 754, 1130
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 302, 875, 1136, 1367, 1436, 1445, 1541, 1577
HpyF3I CTNAG 4 cut(s) 554, 1332, 1528, 1558
HpySE526I ACGT 8 cut(s) 145, 309, 683, 983, 1220, 1347, 1478, 1613
Hsp92II CATG 5 cut(s) 489, 694, 1291, 1397, 1659
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 1087
LmnI GCTCC 4 cut(s) 29, 352, 1336, 1636
Lsp1109I GCAGC 1 cut(s) 1442
LweI GCATC 2 cut(s) 162, 336
MaeI CTAG 1 cut(s) 89
MaeII ACGT 8 cut(s) 145, 309, 683, 983, 1220, 1347, 1478, 1613
MaeIII GTNAC 3 cut(s) 230, 573, 684
MbiI CCGCTC 2 cut(s) 1409, 1514
MflI RGATCY 2 cut(s) 538, 1082
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 8 cut(s) 365, 457, 726, 835, 959, 1106, 1186, 1363
MluNI TGGCCA 1 cut(s) 490
MmeI TCCRAC 3 cut(s) 586, 1203, 1574
Mox20I TGGCCA 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 638
MscI TGGCCA 1 cut(s) 490
MseI TTAA 4 cut(s) 189, 596, 630, 978
Msp20I TGGCCA 1 cut(s) 490
MspA1I CMGCKG 2 cut(s) 1448, 1544
MspI CCGG 3 cut(s) 1055, 1256, 1599
MspR9I CCNGG 1 cut(s) 1341
MvaI CCWGG 1 cut(s) 1341
MwoI GCNNNNNNNGC 9 cut(s) 98, 302, 875, 1136, 1367, 1436, 1445, 1541, 1577
NcoI CCATGG 2 cut(s) 485, 1287
NlaIII CATG 5 cut(s) 489, 694, 1291, 1397, 1659
NlaIV GGNNCC 2 cut(s) 480, 1338
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 2 cut(s) 711, 915
PagI TCATGA 1 cut(s) 1393
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 9 cut(s) 257, 286, 398, 470, 611, 952, 965, 1142, 1283
PinAI ACCGGT 1 cut(s) 1598
PkrI GCNGC 4 cut(s) 877, 880, 1034, 1432
Psp124BI GAGCTC 1 cut(s) 252
Psp1406I AACGTT 2 cut(s) 1220, 1347
Psp6I CCWGG 1 cut(s) 1339
PspGI CCWGG 1 cut(s) 1339
PspN4I GGNNCC 2 cut(s) 480, 1338
PsuI RGATCY 2 cut(s) 538, 1082
RsaI GTAC 1 cut(s) 1059
RsaNI GTAC 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 189, 596, 630, 978
SatI GCNGC 4 cut(s) 876, 879, 1033, 1431
ScrFI CCNGG 1 cut(s) 1341
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 2 cut(s) 162, 336
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 2 cut(s) 711, 915
SgrAI CRCCGGYG 1 cut(s) 1598
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
Sse9I AATT 8 cut(s) 365, 457, 726, 835, 959, 1106, 1186, 1363
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 1339
StyI CCWWGG 2 cut(s) 485, 1287
TaaI ACNGT 5 cut(s) 282, 533, 844, 1182, 1374
TaiI ACGT 8 cut(s) 148, 312, 686, 986, 1223, 1350, 1481, 1616
TasI AATT 8 cut(s) 365, 457, 726, 835, 959, 1106, 1186, 1363
TauI GCSGC 3 cut(s) 878, 881, 1035
TfiI GAWTC 9 cut(s) 257, 286, 398, 470, 611, 952, 965, 1142, 1283
Tru1I TTAA 4 cut(s) 189, 596, 630, 978
Tru9I TTAA 4 cut(s) 189, 596, 630, 978
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 1430
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 50, 722, 1253, 1382, 1623
TspGWI ACGGA 5 cut(s) 139, 156, 157, 218, 306
TspRI CASTG 1 cut(s) 538
XapI RAATTY 4 cut(s) 365, 726, 959, 1186
XmiI GTMKAC 1 cut(s) 1563
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.