Rroxscaffold_1G00011830
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006116
Physical Location & Seq
Forward (+)
14792355 .. 14795078
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011830.1

Sequence Viewer

Length: 1065 bp
ATGAAGAAGGCCTTTTCTTCCATGGTGTTCATAATCCGAGAGCTCCATAGCTCTTGTCTACAGATGCGAGAGGCTCTGTTCTACGAAGATTTACAGGGGATTCTAGAACGAGTGCAGAAAGAGATGCACGATTCGTTTGTGTGGCTGTTTCAGCAAGTTTTTTCTCAAACACCGACTCTAATGGTGTGCGTCATGATTCTATTAGCCAATTTCACCGTCCACTCCTTAGGCCACAACGCCGCCATTGCAGCTCCTCCACCGGCTTATGCAGCCACAGCAGAAACAGTTTCAATCATGGACGTTCAAGATGACCAGAAATCTCCCCAATTCGATTCCTCAACAAGTAAATCGTTCTCTGTTTCGTCATCCTCCAGTGGGAACACGACTCCCATTGGAGGAAACAACGGCGGAGGCGGGAATGTCCGCTCCGTCGGGAGCGGCACAGATGGTGATGGTGGGTTTGACGGTTCTGACCAGTACCGGACAATCGTCCCCGACGGTGCTTCCCAATTGTCTATGGGGACAACCAGAGAAGCAGAGTCGGTTTCGGAGCAAGAGAGCAGAGAAGAGATGGCTCTGTGGAATTCAGTAGTGGAAGAAGCAAATCAAATGCAAGGCAGAGACGAATCTCTAGACCAAGAAACCATCCAGAGATTCGTCTCGCCGGTCACCGTAGATATGGAAAGTGATGATTACGCAGAGTACTTCAGAACTGAGATGCTCTACCAATCGGAGTTATCCAAGGAGCCCACCAATTCTCTCCTTCTCTCCAATTACGCTCAGTTCCTCTACCAAGTCGCTCATGACTATGATAGAGCTGAGGAGTACTTCAAGAGGGCAGTTGGGGTTGAGCCGGCGGACGCGGAGGCCTACAATAAGTACGCCACCTTCCTTTGGAGGGCGAGAAACGACTTGTGGGCAGCAGAGGAGACCTACTTGGAAGCCATTAACGCTGATCCGAGCAACTCCTACTATGCCGCTAATTACGCTCATTTTCTCTGGAACACGGGCGCCGAGGACACGTGTTTCCCTCTAGACTCGCCGGACGCCGCCCAAGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

354

Amino Acids

39.31

Weight (kDa)

4.3

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1010
AccBSI CCGCTC 2 cut(s) 426, 438
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 863
AciI CCGC 9 cut(s) 240, 408, 414, 424, 438, 857, 863, 978, 1050
AclWI GGATC 1 cut(s) 950
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 1 cut(s) 691
AcvI CACGTG 1 cut(s) 1023
AcyI GRCGYC 2 cut(s) 1011, 1047
AfaI GTAC 4 cut(s) 479, 704, 827, 881
AfiI CCNNNNNNNGG 4 cut(s) 375, 395, 894, 898
AflIII ACRYGT 2 cut(s) 1020, 1022
AgsI TTSAA 3 cut(s) 291, 305, 832
AluBI AGCT 4 cut(s) 43, 51, 251, 818
AluI AGCT 4 cut(s) 43, 51, 251, 818
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 615, 664, 923
AlwI GGATC 1 cut(s) 950
AoxI GGCC 3 cut(s) 9, 229, 867
ApeKI GCWGC 3 cut(s) 248, 269, 920
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 1013
AsuHPI GGTGA 3 cut(s) 205, 461, 661
AxyI CCTNAGG 1 cut(s) 226
BanI GGYRCC 1 cut(s) 1010
BanII GRGCYC 2 cut(s) 45, 750
BarI GAAGNNNNNNTAC 2 cut(s) 872, 904
BbrPI CACGTG 1 cut(s) 1023
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 3 cut(s) 260, 281, 932
BccI CCATC 4 cut(s) 440, 446, 565, 653
BceAI ACGGC 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 615, 664, 923
BfaI CTAG 3 cut(s) 104, 632, 1034
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 1014
BisI GCNGC 7 cut(s) 240, 249, 270, 439, 921, 978, 1050
BlsI GCNGC 7 cut(s) 241, 250, 271, 440, 922, 979, 1051
BmcAI AGTACT 2 cut(s) 704, 827
BmiI GGNNCC 2 cut(s) 747, 1012
BmsI GCATC 3 cut(s) 54, 114, 708
BoxI GACNNNNGTC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 819
BsaAI YACGTR 1 cut(s) 1023
BsaHI GRCGYC 2 cut(s) 1011, 1047
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 21, 741, 1014
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 395, 894, 898
Bse118I RCCGGY 3 cut(s) 259, 664, 853
Bse1I ACTGG 2 cut(s) 372, 475
Bse21I CCTNAGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 21, 741, 1014
BseGI GGATG 2 cut(s) 365, 645
BseLI CCNNNNNNNGG 4 cut(s) 375, 395, 894, 898
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 705, 794, 810
BseNI ACTGG 2 cut(s) 372, 475
BseRI GAGGAG 3 cut(s) 243, 836, 941
BseXI GCAGC 3 cut(s) 260, 281, 932
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 863
BshFI GGCC 3 cut(s) 11, 231, 869
BshNI GGYRCC 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 5 cut(s) 260, 481, 665, 854, 1043
BslFI GGGAC 2 cut(s) 476, 535
BslI CCNNNNNNNGG 4 cut(s) 375, 395, 894, 898
BsmAI GTCTC 3 cut(s) 615, 664, 923
BsmBI CGTCTC 2 cut(s) 615, 664
BsmFI GGGAC 2 cut(s) 476, 535
BsnI GGCC 3 cut(s) 11, 231, 869
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 2 cut(s) 45, 750
Bsp143I GATC 1 cut(s) 955
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 9 cut(s) 240, 408, 414, 424, 438, 857, 863, 978, 1050
BspANI GGCC 3 cut(s) 11, 231, 869
BspCNI CTCAG 3 cut(s) 706, 793, 811
BspFNI CGCG 1 cut(s) 863
BspHI TCATGA 2 cut(s) 192, 802
BspLI GGNNCC 2 cut(s) 747, 1012
BspPI GGATC 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 1010
BspTNI GGTCTC 1 cut(s) 923
BsrBI CCGCTC 2 cut(s) 426, 438
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 3 cut(s) 259, 664, 853
BsrI ACTGG 2 cut(s) 372, 475
BssAI RCCGGY 3 cut(s) 259, 664, 853
BssECI CCNNGG 3 cut(s) 21, 741, 1014
BssMI GATC 1 cut(s) 955
BssNI GRCGYC 2 cut(s) 1011, 1047
BssT1I CCWWGG 2 cut(s) 21, 741
Bst4CI ACNGT 5 cut(s) 217, 286, 467, 500, 673
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 2 cut(s) 1011, 1047
BstBAI YACGTR 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 5 cut(s) 226, 714, 780, 819, 1062
BstDSI CCRYGG 1 cut(s) 21
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 2 cut(s) 365, 645
BstFNI CGCG 1 cut(s) 863
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 1 cut(s) 958
BstMAI GTCTC 3 cut(s) 615, 664, 923
BstMBI GATC 1 cut(s) 955
BstMWI GCNNNNNNNGC 8 cut(s) 151, 245, 248, 269, 275, 950, 986, 1058
BstPAI GACNNNNGTC 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 667
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 863
BstV1I GCAGC 3 cut(s) 260, 281, 932
Bsu36I CCTNAGG 1 cut(s) 226
BsuRI GGCC 3 cut(s) 11, 231, 869
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 365, 645
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 855
CciI TCATGA 2 cut(s) 192, 802
CfoI GCGC 1 cut(s) 1013
Cfr10I RCCGGY 3 cut(s) 259, 664, 853
CseI GACGC 3 cut(s) 178, 869, 1055
Csp6I GTAC 4 cut(s) 478, 703, 826, 880
CviAII CATG 4 cut(s) 22, 193, 295, 803
CviQI GTAC 4 cut(s) 478, 703, 826, 880
DdeI CTNAG 5 cut(s) 226, 714, 780, 819, 1062
DinI GGCGCC 1 cut(s) 1012
DpnI GATC 1 cut(s) 957
DpnII GATC 1 cut(s) 955
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 2 cut(s) 423, 872
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 21, 741
Eco147I AGGCCT 2 cut(s) 11, 869
Eco24I GRGCYC 2 cut(s) 45, 750
Eco31I GGTCTC 1 cut(s) 923
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 691
Eco72I CACGTG 1 cut(s) 1023
Eco81I CCTNAGG 1 cut(s) 226
Eco91I GGTNACC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 21, 741
EcoT38I GRGCYC 2 cut(s) 45, 750
EgeI GGCGCC 1 cut(s) 1012
EheI GGCGCC 1 cut(s) 1012
ErhI CCWWGG 2 cut(s) 21, 741
Esp3I CGTCTC 2 cut(s) 615, 664
FaeI CATG 4 cut(s) 25, 196, 298, 806
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 476, 535
FatI CATG 4 cut(s) 21, 192, 294, 802
FauI CCCGC 1 cut(s) 407
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 7 cut(s) 240, 249, 270, 439, 921, 978, 1050
FokI GGATG 2 cut(s) 352, 632
FriOI GRGCYC 2 cut(s) 45, 750
Fsp4HI GCNGC 7 cut(s) 240, 249, 270, 439, 921, 978, 1050
FspBI CTAG 3 cut(s) 104, 632, 1034
GlaI GCGC 1 cut(s) 1012
GluI GCNGC 7 cut(s) 240, 249, 270, 439, 921, 978, 1050
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 3 cut(s) 11, 231, 869
HapII CCGG 5 cut(s) 260, 481, 665, 854, 1043
HgaI GACGC 3 cut(s) 178, 869, 1055
HhaI GCGC 1 cut(s) 1013
Hin1I GRCGYC 2 cut(s) 1011, 1047
Hin1II CATG 4 cut(s) 25, 196, 298, 806
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HpaII CCGG 5 cut(s) 260, 481, 665, 854, 1043
HphI GGTGA 3 cut(s) 205, 461, 661
Hpy166II GTNNAC 2 cut(s) 59, 220
Hpy188I TCNGA 6 cut(s) 38, 472, 550, 710, 733, 960
Hpy8I GTNNAC 2 cut(s) 59, 220
Hpy99I CGWCG 2 cut(s) 434, 500
HpyAV CCTTC 2 cut(s) 773, 898
HpyCH4III ACNGT 5 cut(s) 217, 286, 467, 500, 673
HpyCH4IV ACGT 2 cut(s) 300, 1022
HpyCH4V TGCA 5 cut(s) 115, 127, 248, 269, 613
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 245, 248, 269, 275, 950, 986, 1058
HpyF3I CTNAG 5 cut(s) 226, 714, 780, 819, 1062
HpySE526I ACGT 2 cut(s) 300, 1022
Hsp92I GRCGYC 2 cut(s) 1011, 1047
Hsp92II CATG 4 cut(s) 25, 196, 298, 806
HspAI GCGC 1 cut(s) 1011
KasI GGCGCC 1 cut(s) 1010
KroI GCCGGC 1 cut(s) 853
KroNI GCCGGC 1 cut(s) 855
Kzo9I GATC 1 cut(s) 955
LmnI GCTCC 6 cut(s) 48, 256, 431, 435, 550, 745
Lsp1109I GCAGC 3 cut(s) 260, 281, 932
LweI GCATC 3 cut(s) 54, 114, 708
MaeI CTAG 3 cut(s) 104, 632, 1034
MaeII ACGT 2 cut(s) 300, 1022
MaeIII GTNAC 1 cut(s) 667
MalI GATC 1 cut(s) 957
MbiI CCGCTC 2 cut(s) 426, 438
MboI GATC 1 cut(s) 955
MboII GAAGA 5 cut(s) 9, 16, 98, 578, 608
MfeI CAATTG 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 45, 750
MluCI AATT 7 cut(s) 208, 326, 509, 583, 754, 772, 982
Mly113I GGCGCC 1 cut(s) 1011
MlyI GAGTC 4 cut(s) 169, 379, 548, 1031
MroNI GCCGGC 1 cut(s) 853
MseI TTAA 1 cut(s) 948
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 5 cut(s) 260, 481, 665, 854, 1043
MunI CAATTG 1 cut(s) 509
MvnI CGCG 1 cut(s) 863
MwoI GCNNNNNNNGC 8 cut(s) 151, 245, 248, 269, 275, 950, 986, 1058
NaeI GCCGGC 1 cut(s) 855
NarI GGCGCC 1 cut(s) 1011
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 955
NgoMIV GCCGGC 1 cut(s) 853
NlaIII CATG 4 cut(s) 25, 196, 298, 806
NlaIV GGNNCC 2 cut(s) 747, 1012
NmeAIII GCCGAG 1 cut(s) 1039
NmuCI GTSAC 1 cut(s) 667
PagI TCATGA 2 cut(s) 192, 802
PceI AGGCCT 2 cut(s) 11, 869
PdiI GCCGGC 1 cut(s) 855
PfeI GAWTC 6 cut(s) 100, 131, 196, 332, 626, 654
PkrI GCNGC 7 cut(s) 241, 250, 271, 440, 922, 979, 1051
PleI GAGTC 4 cut(s) 169, 379, 547, 1031
PluTI GGCGCC 1 cut(s) 1014
PmaCI CACGTG 1 cut(s) 1023
PmlI CACGTG 1 cut(s) 1023
PpsI GAGTC 4 cut(s) 169, 379, 547, 1031
Ppu21I YACGTR 1 cut(s) 1023
PshAI GACNNNNGTC 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 45
PspCI CACGTG 1 cut(s) 1023
PspEI GGTNACC 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 747, 1012
RsaI GTAC 4 cut(s) 479, 704, 827, 881
RsaNI GTAC 4 cut(s) 478, 703, 826, 880
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 7 cut(s) 240, 249, 270, 439, 921, 978, 1050
Sau3AI GATC 1 cut(s) 955
ScaI AGTACT 2 cut(s) 704, 827
SchI GAGTC 4 cut(s) 169, 379, 548, 1031
SduI GDGCHC 2 cut(s) 45, 750
SetI ASST 8 cut(s) 45, 53, 253, 303, 820, 890, 935, 1025
SfaNI GCATC 3 cut(s) 54, 114, 708
SfcI CTRYAG 1 cut(s) 59
SfoI GGCGCC 1 cut(s) 1012
SmiMI CAYNNNNRTG 1 cut(s) 807
Sse9I AATT 7 cut(s) 208, 326, 509, 583, 754, 772, 982
SseBI AGGCCT 2 cut(s) 11, 869
SsiI CCGC 9 cut(s) 240, 408, 414, 424, 438, 857, 863, 978, 1050
SspDI GGCGCC 1 cut(s) 1010
SspMI CTAG 3 cut(s) 104, 632, 1034
SstI GAGCTC 1 cut(s) 45
StuI AGGCCT 2 cut(s) 11, 869
StyI CCWWGG 2 cut(s) 21, 741
TaaI ACNGT 5 cut(s) 217, 286, 467, 500, 673
TaiI ACGT 2 cut(s) 303, 1025
TaqI TCGA 1 cut(s) 330
TasI AATT 7 cut(s) 208, 326, 509, 583, 754, 772, 982
TatI WGTACW 2 cut(s) 702, 825
TauI GCSGC 4 cut(s) 242, 441, 980, 1052
TfiI GAWTC 6 cut(s) 100, 131, 196, 332, 626, 654
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 3 cut(s) 248, 269, 920
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 2 cut(s) 17, 19
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 379
XapI RAATTY 1 cut(s) 583
XbaI TCTAGA 3 cut(s) 103, 631, 1033
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 3 cut(s) 104, 632, 1034
ZrmI AGTACT 2 cut(s) 704, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.