pycom08g09990
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006116
Physical Location & Seq
Forward (+)
8305266 .. 8306759
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09990.1

Sequence Viewer

Length: 1404 bp
ATGTTACTATACCCATGCCAACTCAAAGAAACAGAAGTTGAAGTCCACAAAAAGGAGCAGCCCAAATCCAAACCCAAACCTCTCATGATGGGCTGGATTGTCGAGCAAGAAGCCCAAAATGAGTACGCAGTTAGAAGCCGAGTACTCTCTCACTTCACCCTCTCTCTCTCCCTCTCCCTCTCACTCTTCCAATTTCTGTCTTTCCAATCCAACCAAAACAAACAGAAAAAAAATCCAAAACCCAACAACAAAACCACAGAGAGAACGAAGGAAGAAGGCGATGAGGATGAATTGGGTTTATTTTCCGAAACAAAAACAAAACCAGAATCCATCACTCCGCCATTAAAATTCCACCATGAAATTGCAAGCTCCTCCTCACCATCTCATTTTCTCCATTGTTCTCTCCCTCTCCCTCTCTCTCTCCCTCACTCCCCTCCACGCTCTTCAATTTCAAACGCCCACTGCAATTCACAGAAGAATTCTGCACTAGCCCCTGTTTCCAGACAGCTCCTCCCCTCCGCCGGACACTTCAAGCAACCAGCCATTTTTCCATTAATTGCCATCTGGGTCGACCCCAGATCAGACTCAACCTGCACCGCTGCCGTTGAACGCCACCACTGTGCAGAACCCACAAGCGCCGCAACCGACCAAGGGGACAAAGAAAGTCGCCATTGCTGCTTCGGTCGGAATTGTGACTCTCGGAATGCTCTCCGGACTCGCCTTCTTCCTTTACCGCCACCGAGTCAAACACCAGTCCGAGTCTCAGAAACTTGTCAATGGCGGAGGACCCGGTTCCCAGAGATTCGCCGACGACCCGAGAGTCCCACCCTCGAGCTTCCTCTACATTGGCACAATCGAACCCAGCCACTGGTGGCCGACGGCAGCGCCAAGTCGCACAAAATGGCGCAGGTTTTCAACCACGACGGTCTCGACAACCTCAAGCCCCCAATTGTGCTTCAAGAGTTTGTGAACCATGGCGGCGTCATCTTTAAAATGCAGTGGCAGGAGGGTTTCCGAGAAGCAGGGGAATCTGCGTGCTGCTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGCCTTCTCTTCCATGGTGTTCATAATCCGAGAGCTCCATAGCTACACGTTGCAGATGAGAGAGATTCTCTTCTTCAAAGATTTGCAGGGGATTTTAAGCAGGGTGCAGAGGAGATGCAAGCTTCGTTCGTCTGGCTATTTCAACAGGTCTTCTCTCGGACTAAAGGCTCCGATTGTGAGAGCTGCAAAGGAAGCTGGGCGTGGCTTGGGAGTCCGAAAGATCAATCCTCCTTCGATCATCGACCTCCTCACGGCTGTGCTCCATCTTCAAACTCTCCGAACTCCGCTGCTTCAGCTCTCCAAACTCCATAGCCGCAGCAACATCATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

468

Amino Acids

52.88

Weight (kDa)

9.84

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ins134_P3_kin PF05770 287 - 332 3.3e-18 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 819
Acc36I ACCTGC 2 cut(s) 599, 898
AccB7I CCANNNNNTGG 1 cut(s) 868
AccI GTMKAC 1 cut(s) 570
AccIII TCCGGA 1 cut(s) 711
AciI CCGC 9 cut(s) 338, 519, 597, 639, 734, 781, 978, 1355, 1384
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 347, 478
AcuI CTGAAG 1 cut(s) 1346
AcyI GRCGYC 1 cut(s) 981
AfaI GTAC 2 cut(s) 125, 144
AfiI CCNNNNNNNGG 5 cut(s) 52, 521, 651, 868, 1321
AflIII ACRYGT 1 cut(s) 1116
AleI CACNNNNGTG 2 cut(s) 618, 1325
AluBI AGCT 9 cut(s) 369, 508, 835, 1105, 1113, 1192, 1253, 1265, 1366
AluI AGCT 9 cut(s) 369, 508, 835, 1105, 1113, 1192, 1253, 1265, 1366
Alw21I GWGCWC 2 cut(s) 1107, 1332
Alw26I GTCTC 2 cut(s) 766, 932
AlwNI CAGNNNCTG 1 cut(s) 868
Ama87I CYCGRG 2 cut(s) 815, 830
Aor13HI TCCGGA 1 cut(s) 711
AoxI GGCC 2 cut(s) 873, 1071
ApeKI GCWGC 8 cut(s) 58, 599, 675, 882, 1038, 1253, 1357, 1386
ApoI RAATTY 2 cut(s) 347, 478
AseI ATTAAT 1 cut(s) 554
AspLEI GCGC 3 cut(s) 638, 887, 907
AspS9I GGNCC 1 cut(s) 786
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 148, 369
AvaI CYCGRG 2 cut(s) 815, 830
AvaII GGWCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 2 cut(s) 1107, 1332
BbvI GCAGC 8 cut(s) 70, 586, 662, 894, 1025, 1240, 1344, 1398
BccI CCATC 5 cut(s) 82, 338, 388, 569, 1341
BceAI ACGGC 3 cut(s) 587, 895, 1338
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 766, 932
BfaI CTAG 1 cut(s) 488
BfoI RGCGCY 2 cut(s) 639, 888
BfuAI ACCTGC 2 cut(s) 599, 898
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 790
Bme18I GGWCC 1 cut(s) 786
BmeT110I CYCGRG 2 cut(s) 815, 830
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 3 cut(s) 788, 794, 1239
BmrFI CCNGG 1 cut(s) 790
BmsI GCATC 1 cut(s) 1175
BpiI GAAGAC 1 cut(s) 1212
BplI GAGNNNNNCTC 2 cut(s) 1122, 1154
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 790
BsaHI GRCGYC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 3 cut(s) 649, 973, 1083
BsaWI WCCGGW 1 cut(s) 711
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 521, 651, 868, 1321
Bse1I ACTGG 2 cut(s) 752, 873
Bse3DI GCAATG 1 cut(s) 670
BseAI TCCGGA 1 cut(s) 711
BseDI CCNNGG 3 cut(s) 649, 973, 1083
BseGI GGATG 2 cut(s) 292, 1395
BseLI CCNNNNNNNGG 5 cut(s) 52, 521, 651, 868, 1321
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 2 cut(s) 752, 873
BseRI GAGGAG 5 cut(s) 361, 364, 500, 1195, 1307
BseXI GCAGC 8 cut(s) 70, 586, 662, 894, 1025, 1240, 1344, 1398
BseYI CCCAGC 2 cut(s) 861, 1265
BsgI GTGCAG 4 cut(s) 468, 577, 642, 1196
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 2 cut(s) 875, 1073
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 2 cut(s) 1107, 1332
BsiHKCI CYCGRG 2 cut(s) 815, 830
BsiSI CCGG 3 cut(s) 522, 712, 790
BslFI GGGAC 2 cut(s) 668, 807
BslI CCNNNNNNNGG 5 cut(s) 52, 521, 651, 868, 1321
BsmAI GTCTC 2 cut(s) 766, 932
BsmFI GGGAC 2 cut(s) 668, 807
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 2 cut(s) 875, 1073
Bso31I GGTCTC 1 cut(s) 932
BsoBI CYCGRG 2 cut(s) 815, 830
Bsp1286I GDGCHC 2 cut(s) 1107, 1332
Bsp13I TCCGGA 1 cut(s) 711
Bsp143I GATC 3 cut(s) 578, 1290, 1305
Bsp19I CCATGG 2 cut(s) 973, 1083
BspACI CCGC 9 cut(s) 338, 519, 597, 639, 734, 781, 978, 1355, 1384
BspANI GGCC 2 cut(s) 875, 1073
BspCNI CTCAG 1 cut(s) 776
BspEI TCCGGA 1 cut(s) 711
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 788, 794, 1239
BspMI ACCTGC 2 cut(s) 599, 898
BspQI GCTCTTC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 2 cut(s) 752, 873
BssECI CCNNGG 3 cut(s) 649, 973, 1083
BssMI GATC 3 cut(s) 578, 1290, 1305
BssNI GRCGYC 1 cut(s) 981
BssT1I CCWWGG 3 cut(s) 649, 973, 1083
Bst4CI ACNGT 2 cut(s) 620, 926
Bst6I CTCTTC 4 cut(s) 191, 448, 1084, 1145
BstACI GRCGYC 1 cut(s) 981
BstC8I GCNNGC 3 cut(s) 367, 1036, 1190
BstDEI CTNAG 1 cut(s) 763
BstDSI CCRYGG 2 cut(s) 973, 1083
BstF5I GGATG 2 cut(s) 292, 1395
BstH2I RGCGCY 2 cut(s) 639, 888
BstHHI GCGC 3 cut(s) 638, 887, 907
BstKTI GATC 3 cut(s) 581, 1293, 1308
BstMAI GTCTC 2 cut(s) 766, 932
BstMBI GATC 3 cut(s) 578, 1290, 1305
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 3 cut(s) 675, 1262, 1363
BstSCI CCNGG 1 cut(s) 788
BstV1I GCAGC 8 cut(s) 70, 586, 662, 894, 1025, 1240, 1344, 1398
BstV2I GAAGAC 1 cut(s) 1212
BsuRI GGCC 2 cut(s) 875, 1073
BtgI CCRYGG 2 cut(s) 973, 1083
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 292, 1395
BtsI GCAGTG 2 cut(s) 460, 1004
BtsIMutI CAGTG 4 cut(s) 460, 616, 866, 1004
BveI ACCTGC 2 cut(s) 599, 898
Cac8I GCNNGC 3 cut(s) 367, 1036, 1190
CaiI CAGNNNCTG 1 cut(s) 868
CciI TCATGA 1 cut(s) 84
CfoI GCGC 3 cut(s) 638, 887, 907
Cfr13I GGNCC 1 cut(s) 786
CseI GACGC 1 cut(s) 970
Csp6I GTAC 2 cut(s) 124, 143
CviAII CATG 5 cut(s) 15, 85, 356, 974, 1084
CviQI GTAC 2 cut(s) 124, 143
DdeI CTNAG 1 cut(s) 763
DpnI GATC 3 cut(s) 580, 1292, 1307
DpnII GATC 3 cut(s) 578, 1290, 1305
DraI TTTAAA 1 cut(s) 991
DrdI GACNNNNNNGTC 1 cut(s) 819
DseDI GACNNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 4 cut(s) 191, 448, 1084, 1145
EarI CTCTTC 4 cut(s) 191, 448, 1084, 1145
EciI GGCGGA 3 cut(s) 327, 508, 796
Ecl136II GAGCTC 1 cut(s) 1105
Eco130I CCWWGG 3 cut(s) 649, 973, 1083
Eco147I AGGCCT 1 cut(s) 1073
Eco24I GRGCYC 1 cut(s) 1107
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 1 cut(s) 786
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 1 cut(s) 1346
Eco88I CYCGRG 2 cut(s) 815, 830
EcoICRI GAGCTC 1 cut(s) 1105
EcoO109I RGGNCCY 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 478
EcoT14I CCWWGG 3 cut(s) 649, 973, 1083
EcoT38I GRGCYC 1 cut(s) 1107
ErhI CCWWGG 3 cut(s) 649, 973, 1083
FaeI CATG 5 cut(s) 18, 88, 359, 977, 1087
FaiI YATR 9 cut(s) 10, 16, 86, 357, 975, 1085, 1094, 1110, 1380
FaqI GGGAC 2 cut(s) 668, 807
FatI CATG 5 cut(s) 14, 84, 355, 973, 1083
FblI GTMKAC 1 cut(s) 570
FokI GGATG 2 cut(s) 299, 1382
FriOI GRGCYC 1 cut(s) 1107
FspBI CTAG 1 cut(s) 488
GlaI GCGC 3 cut(s) 637, 886, 906
GsaI CCCAGC 2 cut(s) 865, 1269
HaeII RGCGCY 2 cut(s) 639, 888
HaeIII GGCC 2 cut(s) 875, 1073
HapII CCGG 3 cut(s) 522, 712, 790
HgaI GACGC 1 cut(s) 970
HhaI GCGC 3 cut(s) 638, 887, 907
Hin1I GRCGYC 1 cut(s) 981
Hin1II CATG 5 cut(s) 18, 88, 359, 977, 1087
Hin6I GCGC 3 cut(s) 636, 885, 905
HinP1I GCGC 3 cut(s) 636, 885, 905
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 1190
HpaII CCGG 3 cut(s) 522, 712, 790
HphI GGTGA 2 cut(s) 148, 369
Hpy166II GTNNAC 3 cut(s) 46, 571, 970
Hpy188III TCNNGA 5 cut(s) 85, 501, 712, 929, 959
Hpy8I GTNNAC 3 cut(s) 46, 571, 970
Hpy99I CGWCG 3 cut(s) 813, 881, 926
HpyAV CCTTC 5 cut(s) 262, 269, 731, 1084, 1311
HpyCH4III ACNGT 2 cut(s) 620, 926
HpyCH4IV ACGT 1 cut(s) 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 675, 1262, 1363
HpyF3I CTNAG 1 cut(s) 763
HpySE526I ACGT 1 cut(s) 1118
Hsp92I GRCGYC 1 cut(s) 981
Hsp92II CATG 5 cut(s) 18, 88, 359, 977, 1087
HspAI GCGC 3 cut(s) 636, 885, 905
Kpn2I TCCGGA 1 cut(s) 711
Kzo9I GATC 3 cut(s) 578, 1290, 1305
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 6 cut(s) 55, 374, 513, 1110, 1243, 1335
Lsp1109I GCAGC 8 cut(s) 70, 586, 662, 894, 1025, 1240, 1344, 1398
LweI GCATC 1 cut(s) 1175
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 1118
MaeIII GTNAC 2 cut(s) 3, 692
MalI GATC 3 cut(s) 580, 1292, 1307
MboI GATC 3 cut(s) 578, 1290, 1305
MfeI CAATTG 1 cut(s) 948
MhlI GDGCHC 2 cut(s) 1107, 1332
MlyI GAGTC 7 cut(s) 578, 689, 709, 751, 768, 829, 1290
MmeI TCCRAC 2 cut(s) 234, 665
MroI TCCGGA 1 cut(s) 711
MseI TTAA 4 cut(s) 344, 554, 990, 1166
MslI CAYNNNNRTG 2 cut(s) 618, 1325
MspA1I CMGCKG 2 cut(s) 599, 1357
MspI CCGG 3 cut(s) 522, 712, 790
MspR9I CCNGG 1 cut(s) 790
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 709
MwoI GCNNNNNNNGC 3 cut(s) 675, 1262, 1363
NciI CCSGG 1 cut(s) 790
NcoI CCATGG 2 cut(s) 973, 1083
NdeII GATC 3 cut(s) 578, 1290, 1305
NlaIII CATG 5 cut(s) 18, 88, 359, 977, 1087
NlaIV GGNNCC 3 cut(s) 788, 794, 1239
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 692
OliI CACNNNNGTG 2 cut(s) 618, 1325
PaeR7I CTCGAG 1 cut(s) 830
PagI TCATGA 1 cut(s) 84
PceI AGGCCT 1 cut(s) 1073
PciSI GCTCTTC 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 4 cut(s) 326, 802, 1028, 1135
PflMI CCANNNNNTGG 1 cut(s) 868
PleI GAGTC 7 cut(s) 578, 689, 709, 750, 767, 828, 1289
PpsI GAGTC 7 cut(s) 578, 689, 709, 750, 767, 828, 1289
PpuMI RGGWCCY 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 786
PspFI CCCAGC 2 cut(s) 861, 1265
PspN4I GGNNCC 3 cut(s) 788, 794, 1239
PspPI GGNCC 1 cut(s) 786
PspPPI RGGWCCY 1 cut(s) 786
PspXI VCTCGAGB 1 cut(s) 830
PstNI CAGNNNCTG 1 cut(s) 868
RsaI GTAC 2 cut(s) 125, 144
RsaNI GTAC 2 cut(s) 124, 143
RseI CAYNNNNRTG 2 cut(s) 618, 1325
SacI GAGCTC 1 cut(s) 1107
SalI GTCGAC 1 cut(s) 569
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 4 cut(s) 344, 554, 990, 1166
Sau3AI GATC 3 cut(s) 578, 1290, 1305
Sau96I GGNCC 1 cut(s) 786
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 7 cut(s) 578, 689, 709, 751, 768, 829, 1290
ScrFI CCNGG 1 cut(s) 790
SduI GDGCHC 2 cut(s) 1107, 1332
SfaNI GCATC 1 cut(s) 1175
Sfr274I CTCGAG 1 cut(s) 830
SinI GGWCC 1 cut(s) 786
SlaI CTCGAG 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 618, 1325
SmlI CTYRAG 2 cut(s) 830, 938
SmoI CTYRAG 2 cut(s) 830, 938
SseBI AGGCCT 1 cut(s) 1073
SsiI CCGC 9 cut(s) 338, 519, 597, 639, 734, 781, 978, 1355, 1384
SspMI CTAG 1 cut(s) 488
SstI GAGCTC 1 cut(s) 1107
StuI AGGCCT 1 cut(s) 1073
StyD4I CCNGG 1 cut(s) 788
StyI CCWWGG 3 cut(s) 649, 973, 1083
TaaI ACNGT 2 cut(s) 620, 926
TaiI ACGT 1 cut(s) 1121
TaqI TCGA 7 cut(s) 102, 570, 831, 856, 930, 1304, 1311
TaqII GACCGA 1 cut(s) 671
TatI WGTACW 1 cut(s) 142
TauI GCSGC 3 cut(s) 641, 981, 1386
TfiI GAWTC 4 cut(s) 326, 802, 1028, 1135
Tru1I TTAA 4 cut(s) 344, 554, 990, 1166
Tru9I TTAA 4 cut(s) 344, 554, 990, 1166
TscAI CASTG 4 cut(s) 467, 623, 873, 1004
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 8 cut(s) 58, 599, 675, 882, 1038, 1253, 1357, 1386
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 3 cut(s) 303, 372, 1081
TspRI CASTG 4 cut(s) 467, 623, 873, 1004
Van91I CCANNNNNTGG 1 cut(s) 868
VpaK11BI GGWCC 1 cut(s) 786
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 2 cut(s) 347, 478
XhoI CTCGAG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.