AT2G29670
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006116
Physical Location & Seq
Reverse (-)
12681831 .. 12685151
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29670.1

Sequence Viewer

Length: 1611 bp
ATGGGGGTGAAAGTAGCTTCTTCGTCTACTTTCCTTCAATGGACTACTCAGCCTATTATTCATCAGTCTTCTTCACCATCTCAAACCCTAGCTTCGGGAACCATAACATCTCCTTCAAAACGACGTAGCACAGTACACGACGGCCGGTTTCTATCATGTCGTTTCGTGACACAGAGACTAAACCGTTCGGCTCTTTTCGGAACTCCGTCGACGAAGCTTCATCGACCCAAGTCATGTGAGCTATGGAAATCATCATCATCATCATCTAGACCGATCAAAACTCAGTCGTTTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTCTCGAAAAAAATCCAAGAGCTAACTCTCAGATTCAATATCCCACACCATGACGACGACGAGAATTCAATCGAGCCGCCATGGAACGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCAAACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACGTCAATGGGAAGAAGGAGTTAAACAAGCTGGTGAATCTGCGTGTTGCTCGATGAATAAAGCTTTTTCTTCAATGGTGTTTATGATACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATTCTGTTCTACGAAGACTTGCAAGAGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATTCTCTTAGCCAATTTCACTGTTTATTCTATCGGTAACAACAGCTCCGCTTTAGCCGCTGTTGCTCCTCTTCCTCCGACGATTACGGAGTTAACAACTGTTAGTGAAACAGAGGAAACAAACGTGAAGTTTGATTCCTCGGTGGTGAAAACGTTCTTTGTATCATCTCCTAGTGGGAGTATAGCTTCAGTTGGTGGTAACAACAATGGCGGCGGTGGAAACGTCAAGCCGGTGTTAAGCGGAACTGACGGTGATGGATCCGATGGATCAGAACAGTTCAGAACAATCATACCCGAAGGAGTTTCTCAATTGTCATCATCGAATTTCGGGTCAGAGCCGTCAGTATCGGGACAAGATGAACATAGATTGTGGAATTCGATGGTGGAGGAAGCAGAACGAATGCAGTATTCAAATATTGACGATTCGTTGGATCAGGAGACGAGGAAGCGGTTCGTGTCTCATGTAGAGGCTCGAGTAGAAGCAGAGGAAGACACTGGTTACTTCAAAACAGAGCTAATGTATCAAACAGAACTGTCTCAAGAGCCTAATAATCCTCTACTACTCGCTAACTATGCTCAGTTCCTTTACCTCGTCTCTAATGACCATGACAGAGCGGAAGAGTATTTCAAGAGAGCGGTAGGAGTGGAACCGAAAGATGCAGAGGCGTTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTTTGGGCGGCTGAGGAGACTTTCTTAGAAGCAATTGATGCCGATCCGACCAACTCTTACTACGCCGCTAATTACGCCAATTTCTTGTGGAATACCGGCGGTGATGACACGTGTTTCCCTCTTGATGACGAGTCTCATGAAGACACCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

536

Amino Acids

60.32

Weight (kDa)

4.92

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AccBSI CCGCTC 2 cut(s) 1364, 1385
AccI GTMKAC 2 cut(s) 26, 209
AclI AACGTT 1 cut(s) 902
AclWI GGATC 6 cut(s) 311, 1002, 1015, 1024, 1188, 1496
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 3 cut(s) 400, 1072, 1123
AcuI CTGAAG 2 cut(s) 584, 921
AcvI CACGTG 1 cut(s) 1569
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 2 cut(s) 1566, 1568
Alw21I GWGCWC 1 cut(s) 1450
Alw26I GTCTC 7 cut(s) 169, 1181, 1212, 1290, 1348, 1469, 1596
AlwI GGATC 6 cut(s) 311, 1002, 1015, 1024, 1188, 1496
Ama87I CYCGRG 1 cut(s) 1221
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 3 cut(s) 400, 1072, 1123
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
Asp700I GAANNNNTTC 2 cut(s) 902, 1199
AspLEI GCGC 1 cut(s) 308
AsuHPI GGTGA 6 cut(s) 19, 66, 548, 907, 1013, 1571
AsuII TTCGAA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 1221
BamHI GGATCC 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 1569
BbsI GAAGAC 4 cut(s) 60, 648, 1245, 1605
Bbv12I GWGCWC 1 cut(s) 1450
BbvCI CCTCAGC 1 cut(s) 1470
BccI CCATC 6 cut(s) 85, 421, 730, 998, 1007, 1123
BceAI ACGGC 2 cut(s) 157, 1072
BcoDI GTCTC 7 cut(s) 169, 1181, 1212, 1290, 1348, 1469, 1596
BfaI CTAG 3 cut(s) 89, 267, 921
BisI GCNGC 5 cut(s) 413, 807, 961, 1467, 1524
BlsI GCNGC 5 cut(s) 414, 808, 962, 1468, 1525
BmeT110I CYCGRG 1 cut(s) 1221
BmiI GGNNCC 3 cut(s) 100, 1009, 1398
BmsI GCATC 3 cut(s) 669, 1396, 1486
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 4 cut(s) 60, 648, 1245, 1605
Bpu10I CCTNAGC 1 cut(s) 1470
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 1272
BsaAI YACGTR 1 cut(s) 1569
BsaBI GATNNNNATC 1 cut(s) 1500
BsaJI CCNNGG 2 cut(s) 416, 888
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 3 cut(s) 144, 979, 1553
Bse1I ACTGG 1 cut(s) 1249
Bse8I GATNNNNATC 1 cut(s) 1500
BseDI CCNNGG 2 cut(s) 416, 888
BseJI GATNNNNATC 1 cut(s) 1500
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 5 cut(s) 62, 296, 379, 1340, 1461
BseNI ACTGG 1 cut(s) 1249
BseRI GAGGAG 2 cut(s) 807, 1487
BseX3I CGGCCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 1450
BsiHKCI CYCGRG 1 cut(s) 1221
BsiSI CCGG 3 cut(s) 145, 980, 1554
BslFI GGGAC 2 cut(s) 1113, 1466
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 7 cut(s) 169, 1181, 1212, 1290, 1348, 1469, 1596
BsmBI CGTCTC 2 cut(s) 1181, 1348
BsmFI GGGAC 2 cut(s) 1113, 1466
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 1221
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 1450
Bsp143I GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
Bsp19I CCATGG 1 cut(s) 416
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 5 cut(s) 61, 295, 378, 1339, 1462
BspHI TCATGA 1 cut(s) 1594
BspLI GGNNCC 3 cut(s) 100, 1009, 1398
BspPI GGATC 6 cut(s) 311, 1002, 1015, 1024, 1188, 1496
BspT104I TTCGAA 1 cut(s) 292
BsrBI CCGCTC 2 cut(s) 1364, 1385
BsrFI RCCGGY 3 cut(s) 144, 979, 1553
BsrI ACTGG 1 cut(s) 1249
BssAI RCCGGY 3 cut(s) 144, 979, 1553
BssECI CCNNGG 2 cut(s) 416, 888
BssMI GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 8 cut(s) 133, 185, 464, 772, 850, 1001, 1026, 1284
Bst6I CTCTTC 5 cut(s) 289, 327, 669, 825, 1362
BstAPI GCANNNNNTGC 1 cut(s) 1496
BstBAI YACGTR 1 cut(s) 1569
BstBI TTCGAA 1 cut(s) 292
BstDEI CTNAG 9 cut(s) 48, 282, 313, 365, 662, 757, 1326, 1470, 1483
BstDSI CCRYGG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 8 cut(s) 276, 319, 472, 1010, 1019, 1183, 1459, 1504
BstMAI GTCTC 7 cut(s) 169, 1181, 1212, 1290, 1348, 1469, 1596
BstMBI GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 5 cut(s) 806, 812, 1322, 1496, 1532
BstPAI GACNNNNGTC 1 cut(s) 229
BstV2I GAAGAC 4 cut(s) 60, 648, 1245, 1605
BstX2I RGATCY 2 cut(s) 316, 1007
BstYI RGATCY 2 cut(s) 316, 1007
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 416
BtsIMutI CAGTG 3 cut(s) 469, 768, 1242
CciI TCATGA 1 cut(s) 1594
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 3 cut(s) 144, 979, 1553
Csp6I GTAC 1 cut(s) 134
CviAII CATG 7 cut(s) 156, 234, 386, 417, 1211, 1355, 1595
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 9 cut(s) 48, 282, 313, 365, 662, 757, 1326, 1470, 1483
DpnI GATC 8 cut(s) 275, 318, 471, 1009, 1018, 1182, 1458, 1503
DpnII GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 5 cut(s) 289, 327, 669, 825, 1362
EarI CTCTTC 5 cut(s) 289, 327, 669, 825, 1362
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 416
Eco52I CGGCCG 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 584, 921
Eco72I CACGTG 1 cut(s) 1569
Eco88I CYCGRG 1 cut(s) 1221
EcoRI GAATTC 2 cut(s) 400, 1123
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
Esp3I CGTCTC 2 cut(s) 1181, 1348
FaeI CATG 7 cut(s) 159, 237, 389, 420, 1214, 1358, 1598
FaqI GGGAC 2 cut(s) 1113, 1466
FatI CATG 7 cut(s) 155, 233, 385, 416, 1210, 1354, 1594
FauNDI CATATG 1 cut(s) 618
FblI GTMKAC 2 cut(s) 26, 209
Fnu4HI GCNGC 5 cut(s) 413, 807, 961, 1467, 1524
Fsp4HI GCNGC 5 cut(s) 413, 807, 961, 1467, 1524
FspBI CTAG 3 cut(s) 89, 267, 921
GlaI GCGC 1 cut(s) 307
GluI GCNGC 5 cut(s) 413, 807, 961, 1467, 1524
HaeIII GGCC 1 cut(s) 144
HapII CCGG 3 cut(s) 145, 980, 1554
HhaI GCGC 1 cut(s) 308
Hin1II CATG 7 cut(s) 159, 237, 389, 420, 1214, 1358, 1598
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 2 cut(s) 210, 843
HindII GTYRAC 2 cut(s) 210, 843
HindIII AAGCTT 2 cut(s) 215, 564
HinfI GANTC 7 cut(s) 369, 539, 628, 751, 884, 1172, 1589
HpaI GTTAAC 1 cut(s) 843
HpaII CCGG 3 cut(s) 145, 980, 1554
HphI GGTGA 6 cut(s) 19, 66, 548, 907, 1013, 1571
Hpy166II GTNNAC 4 cut(s) 27, 136, 210, 843
Hpy8I GTNNAC 4 cut(s) 27, 136, 210, 843
Hpy99I CGWCG 9 cut(s) 126, 143, 211, 214, 332, 395, 398, 832, 1435
HpyAV CCTTC 4 cut(s) 44, 123, 512, 1040
HpyCH4III ACNGT 8 cut(s) 133, 185, 464, 772, 850, 1001, 1026, 1284
HpyCH4IV ACGT 8 cut(s) 124, 505, 731, 873, 902, 972, 1433, 1568
HpyCH4V TGCA 4 cut(s) 649, 682, 1153, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 806, 812, 1322, 1496, 1532
HpyF3I CTNAG 9 cut(s) 48, 282, 313, 365, 662, 757, 1326, 1470, 1483
HpySE526I ACGT 8 cut(s) 124, 505, 731, 873, 902, 972, 1433, 1568
Hsp92II CATG 7 cut(s) 159, 237, 389, 420, 1214, 1358, 1598
HspAI GCGC 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 843
Kzo9I GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
LmnI GCTCC 3 cut(s) 595, 800, 820
LpnPI CCDG 6 cut(s) 158, 519, 993, 1169, 1230, 1567
LweI GCATC 3 cut(s) 669, 1396, 1486
MaeI CTAG 3 cut(s) 89, 267, 921
MaeII ACGT 8 cut(s) 124, 505, 731, 873, 902, 972, 1433, 1568
MaeIII GTNAC 4 cut(s) 166, 785, 947, 1247
MalI GATC 8 cut(s) 275, 318, 471, 1009, 1018, 1182, 1458, 1503
MbiI CCGCTC 2 cut(s) 1364, 1385
MboI GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
MfeI CAATTG 2 cut(s) 1058, 1491
MflI RGATCY 2 cut(s) 316, 1007
MhlI GDGCHC 1 cut(s) 1450
MluCI AATT 8 cut(s) 400, 763, 1058, 1072, 1123, 1491, 1528, 1537
MlyI GAGTC 1 cut(s) 1598
MmeI TCCRAC 4 cut(s) 351, 851, 1158, 1529
MroXI GAANNNNTTC 2 cut(s) 902, 1199
MseI TTAA 3 cut(s) 525, 842, 986
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 3 cut(s) 145, 980, 1554
MunI CAATTG 2 cut(s) 1058, 1491
Mva1269I GAATGC 1 cut(s) 1155
MwoI GCNNNNNNNGC 5 cut(s) 806, 812, 1322, 1496, 1532
NcoI CCATGG 1 cut(s) 416
NdeI CATATG 1 cut(s) 618
NdeII GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
NlaIII CATG 7 cut(s) 159, 237, 389, 420, 1214, 1358, 1598
NlaIV GGNNCC 3 cut(s) 100, 1009, 1398
NmuCI GTSAC 1 cut(s) 166
NspV TTCGAA 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 1221
PagI TCATGA 1 cut(s) 1594
PctI GAATGC 1 cut(s) 1155
PdmI GAANNNNTTC 2 cut(s) 902, 1199
PfeI GAWTC 6 cut(s) 369, 539, 628, 751, 884, 1172
PkrI GCNGC 5 cut(s) 414, 808, 962, 1468, 1525
PleI GAGTC 1 cut(s) 1597
PmaCI CACGTG 1 cut(s) 1569
PmlI CACGTG 1 cut(s) 1569
PpsI GAGTC 1 cut(s) 1597
Ppu21I YACGTR 1 cut(s) 1569
PshAI GACNNNNGTC 1 cut(s) 229
PsiI TTATAA 1 cut(s) 494
Psp1406I AACGTT 1 cut(s) 902
PspCI CACGTG 1 cut(s) 1569
PspN4I GGNNCC 3 cut(s) 100, 1009, 1398
PspXI VCTCGAGB 1 cut(s) 1221
PsuI RGATCY 2 cut(s) 316, 1007
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 525, 842, 986
SatI GCNGC 5 cut(s) 413, 807, 961, 1467, 1524
Sau3AI GATC 8 cut(s) 273, 316, 469, 1007, 1016, 1180, 1456, 1501
SchI GAGTC 1 cut(s) 1598
SduI GDGCHC 1 cut(s) 1450
SfaNI GCATC 3 cut(s) 669, 1396, 1486
Sfr274I CTCGAG 1 cut(s) 1221
SfuI TTCGAA 1 cut(s) 292
SgrDI CGTCGACG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 1221
SmlI CTYRAG 2 cut(s) 1221, 1287
SmoI CTYRAG 2 cut(s) 1221, 1287
Sse9I AATT 8 cut(s) 400, 763, 1058, 1072, 1123, 1491, 1528, 1537
SspI AATATT 1 cut(s) 1165
SspMI CTAG 3 cut(s) 89, 267, 921
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 8 cut(s) 133, 185, 464, 772, 850, 1001, 1026, 1284
TaiI ACGT 8 cut(s) 127, 508, 734, 876, 905, 975, 1436, 1571
TaqII GACCGA 1 cut(s) 286
TasI AATT 8 cut(s) 400, 763, 1058, 1072, 1123, 1491, 1528, 1537
TatI WGTACW 1 cut(s) 133
TauI GCSGC 5 cut(s) 415, 809, 963, 1469, 1526
TfiI GAWTC 6 cut(s) 369, 539, 628, 751, 884, 1172
Tru1I TTAA 3 cut(s) 525, 842, 986
Tru9I TTAA 3 cut(s) 525, 842, 986
TscAI CASTG 3 cut(s) 469, 775, 1249
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 7 cut(s) 50, 209, 422, 467, 572, 1122, 1611
TspGWI ACGGA 2 cut(s) 195, 851
TspRI CASTG 3 cut(s) 469, 775, 1249
XapI RAATTY 3 cut(s) 400, 1072, 1123
XbaI TCTAGA 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 1221
XmiI GTMKAC 2 cut(s) 26, 209
XmnI GAANNNNTTC 2 cut(s) 902, 1199
XspI CTAG 3 cut(s) 89, 267, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.