Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006116

Physical Location & Seq

Genomic Coordinates Reverse (-)

54131784 .. 54132962

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0394400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGGAGATGACATTGGATTTGAAGGAATATGAGTTGAAGAAGAACAGTATGAGAAACATGTACGAGAGCTTGCACTCCCAAGCATCTTCCATGCTAGTCTTCACCCTTCAATGGAAGGATCTCGAGAAACACTTGGATTCGATCTGGGAAGCAAGCCAGACCCGATTCAAAGCGCTCCATGAACGAGAGAAGCAGCTGGATGCCAAAGAGTTAAGGATAGAGTCCAAAGCAAATGAGTTCCAGGAACGAGAGAAGCAGTTGGAGGCCAAAGAGTTAAAGGTGCAGTCCAAAGTGAATGAGTTGCTTGGACTCGAAAAGATGATTGAGGAGAAACAAAAAGACGCTATAGACAGCAAGAACTACTTGAATTCGCTCCAATCATCAATCAAACAGCATACCGAATTGCTTGGAGAGAAGGAAAAACAAATGGAGAAACGAATTCAAGAATTGAATGGGGTTGAGAGGAATATAGAAGAGAAGTTGAACAAATCTCGTGAGGAACTGAATCTGATTGAGAGGACGATTATGGAACAGGGTGATGAATTTGATTTGAAAGAAAAGCAAATTAAAGCCAAACAGAAGAAATTGAATTGGATTGAGTGGAGTATCGAAGAGAAGTTGAAATCCACAACTGAGGAGCAGAAGAAAGCATTTGATGTGAAACAAGAGCGTGTTAAAGAAGAGCAGAAACTGAGAGAGGAGAGACTGAAAGAGGAGGAGAAGTTGAAAGAGCATAAGAAATCAGTAGTGGAAGGCTCTAAGACACTTAAGTCAAGAGAGGAAATAAAGAGGGAAATAGAACTGAAAGTGAAAGATCATTGCTCGCGTAAGATATCACTGGAGGAGTGGTCCTGTAATCTCGAACGTAAAGAGAAAGAATTAGAATTAAAAGAGAAGCAAGTTTTGTTAAAAGCTGAGGAACTTGATTCGCTTAATAAAAGAACCCTCAATGAGTTTCAAAAGCAATTTAGTTCACTCGAAAGTACAATACAAGAACGCGAAAAGCAATTGGAAGCAGACTCCCAGCGACTTAAAGTGAAAGAGAGGCAACTACTTGAAGTGAAAAGTGAAACACTGGAAAAGTTGCAGCAAGAACGTGAAAAGCAACTTGAAGTACAATGGAAAAATTGCATTACGAACGCGAAAAGCAACTCTAAGCGAAAGAGAGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_17 TPR_19

Protein Analysis

392

Amino Acids

47.16

Weight (kDa)

7.06

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07280 AT1G07280 AT1G07280 AT1G07280 AT2G29670 AT2G29670
fragaria_vesca	FvH4_3g38330 FvH4_3g38330
malus_domestica	MD03G1072800.v1.1 MD11G1078900.v1.1
prunus_persica	Prupe.6G059600_v2.0.a1 Prupe.6G059600_v2.0.a1
pyrus_communis	pycom03g05900 pycom08g09990 pycom10g05250 pycom11g06610
rosa_chinensis	RchiOBHm_Chr5g0068901
rosa_laevigata	RLG00000036019
rosa_roxburghii	Rroxscaffold_1G00011830
rosa_rugosa	Rorug05G0394200 Rorug05G0394300 Rorug05G0394400
rosa_samantha	Rh5AG451400 Rh5BG470100 Rh5CG492600 Rh5DG483200
rosa_wichuraiana	Rw5G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccII	CGCG	3 cut(s)	829, 1002, 1145
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	3 cut(s)	370, 441, 545
AfaI	GTAC	3 cut(s)	65, 988, 1119
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	72, 199, 917
AluI	AGCT	3 cut(s)	72, 199, 917
Alw26I	GTCTC	2 cut(s)	700, 1164
AlwI	GGATC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	196, 1090
ApoI	RAATTY	3 cut(s)	370, 441, 545
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	852
AsuHPI	GGTGA	2 cut(s)	97, 551
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	852
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	2 cut(s)	208, 1102
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	700, 1164
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	770
BisI	GCNGC	2 cut(s)	197, 1091
BlsI	GCNGC	2 cut(s)	198, 1092
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	852
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	852
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	95, 193
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	918
BsaXI	ACNNNNNCTCC	4 cut(s)	710, 740, 836, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	846, 1083
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	3 cut(s)	627, 686, 909
BseNI	ACTGG	2 cut(s)	846, 1083
BseRI	GAGGAG	7 cut(s)	20, 344, 653, 716, 731, 734, 860
BseXI	GCAGC	2 cut(s)	208, 1102
BseYI	CCCAGC	1 cut(s)	1026
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	3 cut(s)	829, 1002, 1145
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	700, 1164
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	121, 144, 817
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	628, 687, 910
BspFNI	CGCG	3 cut(s)	829, 1002, 1145
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	678
BspTI	CTTAAG	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	2 cut(s)	846, 1083
BssMI	GATC	3 cut(s)	121, 144, 817
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	50, 1175
Bst6I	CTCTTC	3 cut(s)	471, 609, 678
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	74, 157, 827
BstDEI	CTNAG	5 cut(s)	636, 695, 762, 918, 1158
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	3 cut(s)	829, 1002, 1145
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	124, 147, 820
BstMAI	GTCTC	2 cut(s)	700, 1164
BstMBI	GATC	3 cut(s)	121, 144, 817
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	3 cut(s)	829, 1002, 1145
BstV1I	GCAGC	2 cut(s)	208, 1102
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	839, 1076
Cac8I	GCNNGC	3 cut(s)	74, 157, 827
CaiI	CAGNNNCTG	1 cut(s)	694
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	852
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	64, 987, 1118
CviAII	CATG	3 cut(s)	61, 94, 182
CviJI	RGCY	7 cut(s)	72, 159, 199, 269, 575, 759, 917
CviKI_1	RGCY	7 cut(s)	72, 159, 199, 269, 575, 759, 917
CviQI	GTAC	3 cut(s)	64, 987, 1118
DdeI	CTNAG	5 cut(s)	636, 695, 762, 918, 1158
DpnI	GATC	3 cut(s)	123, 146, 819
DpnII	GATC	3 cut(s)	121, 144, 817
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	3 cut(s)	471, 609, 678
EarI	CTCTTC	3 cut(s)	471, 609, 678
Eco32I	GATATC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	852
Eco47III	AGCGCT	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	125
EcoRI	GAATTC	2 cut(s)	370, 441
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	837
FaeI	CATG	3 cut(s)	64, 97, 185
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	3 cut(s)	60, 93, 181
Fnu4HI	GCNGC	2 cut(s)	197, 1091
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	197, 1091
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	197, 1091
GsaI	CCCAGC	1 cut(s)	1030
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	269
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	64, 97, 185
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	7 cut(s)	140, 168, 224, 312, 508, 929, 1022
HphI	GGTGA	2 cut(s)	97, 551
Hpy166II	GTNNAC	1 cut(s)	977
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	6 cut(s)	125, 127, 446, 497, 777, 863
Hpy8I	GTNNAC	1 cut(s)	977
HpyAV	CCTTC	5 cut(s)	19, 112, 119, 412, 749
HpyCH4III	ACNGT	2 cut(s)	50, 1175
HpyCH4IV	ACGT	2 cut(s)	868, 1099
HpyCH4V	TGCA	4 cut(s)	76, 286, 1090, 1134
HpyF3I	CTNAG	5 cut(s)	636, 695, 762, 918, 1158
HpySE526I	ACGT	2 cut(s)	868, 1099
Hsp92II	CATG	3 cut(s)	64, 97, 185
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	121, 144, 817
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	3 cut(s)	183, 381, 640
Lsp1109I	GCAGC	2 cut(s)	208, 1102
LweI	GCATC	2 cut(s)	95, 193
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	868, 1099
MalI	GATC	3 cut(s)	123, 146, 819
MboI	GATC	3 cut(s)	121, 144, 817
MboII	GAAGA	9 cut(s)	52, 55, 81, 94, 488, 595, 626, 658, 695
MfeI	CAATTG	1 cut(s)	1010
MflI	RGATCY	1 cut(s)	121
MlyI	GAGTC	3 cut(s)	233, 306, 1016
MmeI	TCCRAC	1 cut(s)	243
MseI	TTAA	9 cut(s)	215, 278, 570, 678, 771, 890, 911, 936, 1035
MspA1I	CMGCKG	1 cut(s)	199
MspCI	CTTAAG	1 cut(s)	770
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	1010
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	829, 1002, 1145
NdeII	GATC	3 cut(s)	121, 144, 817
NlaIII	CATG	3 cut(s)	64, 97, 185
NspI	RCATGY	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	678
PfeI	GAWTC	4 cut(s)	140, 168, 508, 929
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	198, 1092
PleI	GAGTC	3 cut(s)	232, 306, 1016
PpsI	GAGTC	3 cut(s)	232, 306, 1016
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	1026
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	65, 988, 1119
RsaNI	GTAC	3 cut(s)	64, 987, 1118
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	9 cut(s)	215, 278, 570, 678, 771, 890, 911, 936, 1035
SatI	GCNGC	2 cut(s)	197, 1091
Sau3AI	GATC	3 cut(s)	121, 144, 817
Sau96I	GGNCC	1 cut(s)	852
SchI	GAGTC	3 cut(s)	233, 306, 1016
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	6 cut(s)	74, 201, 285, 871, 919, 1102
SfaNI	GCATC	2 cut(s)	95, 193
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	852
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	125, 770
SmoI	CTYRAG	2 cut(s)	125, 770
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	50, 1175
TaiI	ACGT	2 cut(s)	871, 1102
TaqI	TCGA	6 cut(s)	126, 143, 315, 612, 864, 981
TatI	WGTACW	2 cut(s)	986, 1117
TfiI	GAWTC	4 cut(s)	140, 168, 508, 929
Tru1I	TTAA	9 cut(s)	215, 278, 570, 678, 771, 890, 911, 936, 1035
Tru9I	TTAA	9 cut(s)	215, 278, 570, 678, 771, 890, 911, 936, 1035
TscAI	CASTG	2 cut(s)	846, 1083
TseI	GCWGC	2 cut(s)	196, 1090
TspDTI	ATGAA	2 cut(s)	198, 558
TspRI	CASTG	2 cut(s)	846, 1083
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	852
XapI	RAATTY	3 cut(s)	370, 441, 545
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.