MD03G1072800.v1.1
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5926210 .. 5928083
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1072800.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGGTAGTGAAAGTTGCTTCGACCTGCTTGCAATGGTCGCAGTCGATCGTTCCTCACTCGACGCCGTCATCTCAAGCGCTAGCCTCCTCAATCGCTTCTCCTTCCTCAAAACGACGCAACAGAGGCGGCGACGGTGGAGGTCAGTTATGTCTCTACGTCCACAGCTTGAACCGGTCGGCGTTGTTCGGTGCGCCGTTGACGAAGCTGAGCCGGTCCCGGTCCTGCGGCTACCAGAAGCCGAGATTCCGGTCCATTAGACGAGCTTGCAGTGCCAGTCTGGACGCCTTCTCAGACGAAGAGTTCTCGAAGAAGATTCAAGAGCTCGCTCTCAGATTCCAGCTCTCCGACAATTTTGACGGCGAAGATGACTTTAACGTTGACGGAAACGCCTCGGATTCGGAACCGGAGGCGGCGAATTCTGATGACATTCATGGCGTCAGTGAGTCTGCAATGAGAATGAGATTTGAACAGAACCAGAGCCGGTTCCAGTTGCCGCTCGATCTAGAGCCACCGTGGCCGACCGATTGGCAGCGGAGGGACGAGATTGTCGCGGAGGTTAGCATCGAGCGGAAGGCAAACAGCGTCGACCTTCCGCTTTCGCTCCGAATCATCAAGCGGAAGATGCAGTGGCAGGAGGGTTTCCGAGAAGCTGGGGAATCTGCGTGCTGCTCTGTAAAAAGGGCCTTCTCTTCCATGGTGTTCATAATCCGAGAGCTCCATAGCTACACCTTGCAGATGAGAGAGATTCTCTTCTACGAAGATTTGCAGGGGATTTTAAGCAGAGTGCAGAAGGAGATGCAAGCTTCGTTCGTCTGGCTATTTCAACAGGTCTTCTCTCAGACGCCGACCCTAATGGTGTATGTAATGATCCTCTTGGCGAATTTTACTGTCTACTCATTAGGCCACAACGCCGCCATTGCGGCTGCTCCGCCGCTCGGGTTGTACGCCAGTGCAGCCGAGACTCTTTCAGTGGAAGAAGTTCAGACTCAGAACGATAAATTGGATAACCCCCAATTTGATTCTTCCACAAGTAAGTCGTTTTCAGTGACCGGCAACAGCAAGATGACATCCGTAGGCGGAAACAATGGCGGTGGAGGGAAGGTCCGACCGGTAGGTAGCGGCACAGACGGTGACGGCCGGTTTGACCGGTCAGACCAGTACCGGACAATAGTCCCCGACGGGGCTTCCCAATTGTCCTCATTCGGGACAACCAGAGAAGCAGAGTCGGTTTCGGGGCAAGAGAGCAGGGAGGAGGAGCTGGCTCTGTGGAATTCAGTAGTGGAAGAAGCTCATCAAATGCGGGGCGTACAAGAATCTCTGGATCACGAAACGATGCAGAGATTTGTTTCGCCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

50.12

Weight (kDa)

5.39

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 32
AccBSI CCGCTC 3 cut(s) 496, 568, 934
AccI GTMKAC 2 cut(s) 585, 891
AccII CGCG 1 cut(s) 551
AclI AACGTT 1 cut(s) 375
AclWI GGATC 2 cut(s) 862, 1329
AcoI YGGCCR 2 cut(s) 515, 1135
AcsI RAATTY 3 cut(s) 415, 880, 1270
AcyI GRCGYC 4 cut(s) 62, 282, 435, 842
AfaI GTAC 3 cut(s) 944, 1160, 1308
AfeI AGCGCT 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 935, 1180, 1203
AgeI ACCGGT 3 cut(s) 171, 1108, 1146
AgsI TTSAA 4 cut(s) 169, 317, 467, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
Alw21I GWGCWC 2 cut(s) 324, 717
Alw26I GTCTC 2 cut(s) 155, 953
AlwI GGATC 2 cut(s) 862, 1329
Ama87I CYCGRG 1 cut(s) 935
Aor51HI AGCGCT 1 cut(s) 78
AoxI GGCC 4 cut(s) 515, 681, 901, 1135
ApeKI GCWGC 4 cut(s) 529, 666, 923, 953
ApoI RAATTY 3 cut(s) 415, 880, 1270
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
AsiGI ACCGGT 3 cut(s) 171, 1108, 1146
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 2 cut(s) 79, 193
AspS9I GGNCC 5 cut(s) 213, 219, 249, 681, 1102
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 1142
AsuNHI GCTAGC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 4 cut(s) 213, 219, 249, 1102
BanII GRGCYC 2 cut(s) 324, 717
BbsI GAAGAC 1 cut(s) 823
Bbv12I GWGCWC 2 cut(s) 324, 717
BbvI GCAGC 4 cut(s) 541, 653, 910, 965
BceAI ACGGC 4 cut(s) 49, 178, 373, 1150
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 155, 953
BfaI CTAG 2 cut(s) 80, 503
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 32
BglI GCCNNNNNGGC 2 cut(s) 514, 920
BlpI GCTNAGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 4 cut(s) 213, 219, 249, 1102
BmeT110I CYCGRG 1 cut(s) 935
BmgT120I GGNCC 5 cut(s) 213, 219, 249, 681, 1102
BmiI GGNNCC 3 cut(s) 215, 402, 485
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 4 cut(s) 570, 612, 786, 1323
BmtI GCTAGC 1 cut(s) 83
BoxI GACNNNNGTC 1 cut(s) 1169
BpiI GAAGAC 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 732, 764
Bpu1102I GCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 217
BsaHI GRCGYC 4 cut(s) 62, 282, 435, 842
BsaJI CCNNGG 3 cut(s) 390, 512, 693
BsaWI WCCGGW 6 cut(s) 171, 246, 403, 1108, 1146, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 3 cut(s) 935, 1180, 1203
Bse118I RCCGGY 7 cut(s) 171, 210, 480, 1049, 1108, 1137, 1146
Bse1I ACTGG 4 cut(s) 273, 487, 948, 1156
Bse3DI GCAATG 3 cut(s) 38, 456, 915
BseDI CCNNGG 3 cut(s) 390, 512, 693
BseGI GGATG 1 cut(s) 1067
BseLI CCNNNNNNNGG 3 cut(s) 935, 1180, 1203
BseMI GCAATG 3 cut(s) 38, 456, 915
BseMII CTCAG 5 cut(s) 197, 303, 343, 851, 1001
BseNI ACTGG 4 cut(s) 273, 487, 948, 1156
BseRI GAGGAG 3 cut(s) 76, 1265, 1268
BseX3I CGGCCG 1 cut(s) 1135
BseXI GCAGC 4 cut(s) 541, 653, 910, 965
BseYI CCCAGC 1 cut(s) 650
BsgI GTGCAG 2 cut(s) 806, 972
Bsh1236I CGCG 1 cut(s) 551
Bsh1285I CGRYCG 5 cut(s) 48, 176, 522, 1109, 1138
BshFI GGCC 4 cut(s) 517, 683, 903, 1137
BshTI ACCGGT 3 cut(s) 171, 1108, 1146
BsiEI CGRYCG 5 cut(s) 48, 176, 522, 1109, 1138
BsiHKAI GWGCWC 2 cut(s) 324, 717
BsiHKCI CYCGRG 1 cut(s) 935
BslFI GGGAC 4 cut(s) 199, 551, 1157, 1219
BslI CCNNNNNNNGG 3 cut(s) 935, 1180, 1203
BsmAI GTCTC 2 cut(s) 155, 953
BsmFI GGGAC 4 cut(s) 199, 551, 1157, 1219
BsnI GGCC 4 cut(s) 517, 683, 903, 1137
BsoBI CYCGRG 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 324, 717
Bsp143I GATC 4 cut(s) 45, 499, 867, 1321
Bsp1720I GCTNAGC 1 cut(s) 206
Bsp19I CCATGG 1 cut(s) 693
BspANI GGCC 4 cut(s) 517, 683, 903, 1137
BspCNI CTCAG 5 cut(s) 198, 302, 342, 850, 1000
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 3 cut(s) 215, 402, 485
BspMI ACCTGC 1 cut(s) 32
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 862, 1329
BsrBI CCGCTC 3 cut(s) 496, 568, 934
BsrDI GCAATG 3 cut(s) 38, 456, 915
BsrFI RCCGGY 7 cut(s) 171, 210, 480, 1049, 1108, 1137, 1146
BsrI ACTGG 4 cut(s) 273, 487, 948, 1156
BssAI RCCGGY 7 cut(s) 171, 210, 480, 1049, 1108, 1137, 1146
BssECI CCNNGG 3 cut(s) 390, 512, 693
BssMI GATC 4 cut(s) 45, 499, 867, 1321
BssNI GRCGYC 4 cut(s) 62, 282, 435, 842
BssT1I CCWWGG 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 134, 513, 889, 1130
Bst6I CTCTTC 3 cut(s) 291, 694, 755
BstACI GRCGYC 4 cut(s) 62, 282, 435, 842
BstC8I GCNNGC 7 cut(s) 29, 81, 265, 324, 664, 801, 1260
BstDEI CTNAG 5 cut(s) 206, 289, 329, 837, 987
BstDSI CCRYGG 2 cut(s) 512, 693
BstF5I GGATG 1 cut(s) 1067
BstFNI CGCG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 193
BstKTI GATC 4 cut(s) 48, 502, 870, 1324
BstMAI GTCTC 2 cut(s) 155, 953
BstMBI GATC 4 cut(s) 45, 499, 867, 1321
BstMCI CGRYCG 5 cut(s) 48, 176, 522, 1109, 1138
BstMWI GCNNNNNNNGC 8 cut(s) 37, 123, 269, 514, 622, 917, 920, 953
BstPAI GACNNNNGTC 1 cut(s) 1169
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 4 cut(s) 541, 653, 910, 965
BstV2I GAAGAC 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 1135
BsuRI GGCC 4 cut(s) 517, 683, 903, 1137
BtgI CCRYGG 2 cut(s) 512, 693
BtsCI GGATG 1 cut(s) 1067
BtsI GCAGTG 2 cut(s) 274, 632
BtsIMutI CAGTG 6 cut(s) 274, 445, 632, 955, 975, 1050
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 7 cut(s) 29, 81, 265, 324, 664, 801, 1260
CfoI GCGC 2 cut(s) 79, 193
Cfr10I RCCGGY 7 cut(s) 171, 210, 480, 1049, 1108, 1137, 1146
Cfr13I GGNCC 5 cut(s) 213, 219, 249, 681, 1102
CseI GACGC 6 cut(s) 70, 123, 290, 424, 571, 850
Csp6I GTAC 3 cut(s) 943, 1159, 1307
CspAI ACCGGT 3 cut(s) 171, 1108, 1146
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 2 cut(s) 431, 694
CviQI GTAC 3 cut(s) 943, 1159, 1307
DdeI CTNAG 5 cut(s) 206, 289, 329, 837, 987
DpnI GATC 4 cut(s) 47, 501, 869, 1323
DpnII GATC 4 cut(s) 45, 499, 867, 1321
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 515, 1135
EagI CGGCCG 1 cut(s) 1135
Eam1104I CTCTTC 3 cut(s) 291, 694, 755
EarI CTCTTC 3 cut(s) 291, 694, 755
EciI GGCGGA 2 cut(s) 918, 1092
Ecl136II GAGCTC 2 cut(s) 322, 715
EclXI CGGCCG 1 cut(s) 1135
Eco130I CCWWGG 1 cut(s) 693
Eco24I GRGCYC 2 cut(s) 324, 717
Eco47I GGWCC 4 cut(s) 213, 219, 249, 1102
Eco47III AGCGCT 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 1135
Eco53kI GAGCTC 2 cut(s) 322, 715
Eco88I CYCGRG 1 cut(s) 935
EcoICRI GAGCTC 2 cut(s) 322, 715
EcoO109I RGGNCCY 1 cut(s) 681
EcoRI GAATTC 2 cut(s) 415, 1270
EcoT14I CCWWGG 1 cut(s) 693
EcoT38I GRGCYC 2 cut(s) 324, 717
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 2 cut(s) 434, 697
FaiI YATR 6 cut(s) 148, 432, 695, 704, 720, 861
FaqI GGGAC 4 cut(s) 199, 551, 1157, 1219
FatI CATG 2 cut(s) 430, 693
FauI CCCGC 1 cut(s) 1293
FblI GTMKAC 2 cut(s) 585, 891
FokI GGATG 1 cut(s) 1054
FriOI GRGCYC 2 cut(s) 324, 717
FspBI CTAG 2 cut(s) 80, 503
GlaI GCGC 2 cut(s) 78, 192
GsaI CCCAGC 1 cut(s) 654
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 4 cut(s) 517, 683, 903, 1137
HgaI GACGC 6 cut(s) 70, 123, 290, 424, 571, 850
HhaI GCGC 2 cut(s) 79, 193
Hin1I GRCGYC 4 cut(s) 62, 282, 435, 842
Hin1II CATG 2 cut(s) 434, 697
Hin6I GCGC 2 cut(s) 77, 191
HinP1I GCGC 2 cut(s) 77, 191
HincII GTYRAC 3 cut(s) 198, 379, 586
HindII GTYRAC 3 cut(s) 198, 379, 586
HindIII AAGCTT 1 cut(s) 801
HphI GGTGA 1 cut(s) 1142
Hpy166II GTNNAC 5 cut(s) 160, 198, 379, 586, 892
Hpy188III TCNNGA 7 cut(s) 278, 304, 317, 503, 1204, 1319, 1325
Hpy8I GTNNAC 5 cut(s) 160, 198, 379, 586, 892
Hpy99I CGWCG 5 cut(s) 64, 117, 134, 587, 1181
HpyAV CCTTC 7 cut(s) 111, 295, 565, 599, 694, 784, 1093
HpyCH4III ACNGT 4 cut(s) 134, 513, 889, 1130
HpyCH4IV ACGT 2 cut(s) 156, 375
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 123, 269, 514, 622, 917, 920, 953
HpyF3I CTNAG 5 cut(s) 206, 289, 329, 837, 987
HpySE526I ACGT 2 cut(s) 156, 375
Hsp92I GRCGYC 4 cut(s) 62, 282, 435, 842
Hsp92II CATG 2 cut(s) 434, 697
HspAI GCGC 2 cut(s) 77, 191
Kzo9I GATC 4 cut(s) 45, 499, 867, 1321
LmnI GCTCC 4 cut(s) 606, 720, 931, 1255
Lsp1109I GCAGC 4 cut(s) 541, 653, 910, 965
LweI GCATC 4 cut(s) 570, 612, 786, 1323
MaeI CTAG 2 cut(s) 80, 503
MaeII ACGT 2 cut(s) 156, 375
MaeIII GTNAC 2 cut(s) 1045, 1130
MalI GATC 4 cut(s) 47, 501, 869, 1323
MbiI CCGCTC 3 cut(s) 496, 568, 934
MboI GATC 4 cut(s) 45, 499, 867, 1321
MfeI CAATTG 1 cut(s) 1190
MhlI GDGCHC 2 cut(s) 324, 717
MluCI AATT 7 cut(s) 349, 415, 880, 998, 1013, 1190, 1270
MlyI GAGTC 4 cut(s) 452, 955, 979, 1232
MmeI TCCRAC 2 cut(s) 369, 1129
MroXI GAANNNNTTC 1 cut(s) 978
MseI TTAA 2 cut(s) 372, 776
MspA1I CMGCKG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 1190
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 8 cut(s) 37, 123, 269, 514, 622, 917, 920, 953
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 693
NdeII GATC 4 cut(s) 45, 499, 867, 1321
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 2 cut(s) 434, 697
NlaIV GGNNCC 3 cut(s) 215, 402, 485
NmeAIII GCCGAG 2 cut(s) 264, 982
NmuCI GTSAC 2 cut(s) 1045, 1130
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 9 cut(s) 243, 313, 333, 395, 606, 656, 745, 1019, 1313
PflFI GACNNNGTC 1 cut(s) 64
PinAI ACCGGT 3 cut(s) 171, 1108, 1146
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 4 cut(s) 451, 955, 979, 1231
PpsI GAGTC 4 cut(s) 451, 955, 979, 1231
PshAI GACNNNNGTC 1 cut(s) 1169
Psp124BI GAGCTC 2 cut(s) 324, 717
Psp1406I AACGTT 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 650
PspN4I GGNNCC 3 cut(s) 215, 402, 485
PspPI GGNCC 5 cut(s) 213, 219, 249, 681, 1102
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 48
RsaI GTAC 3 cut(s) 944, 1160, 1308
RsaNI GTAC 3 cut(s) 943, 1159, 1307
SacI GAGCTC 2 cut(s) 324, 717
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 2 cut(s) 372, 776
Sau3AI GATC 4 cut(s) 45, 499, 867, 1321
Sau96I GGNCC 5 cut(s) 213, 219, 249, 681, 1102
SchI GAGTC 4 cut(s) 452, 955, 979, 1232
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 2 cut(s) 324, 717
SfaNI GCATC 4 cut(s) 570, 612, 786, 1323
SinI GGWCC 4 cut(s) 213, 219, 249, 1102
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 7 cut(s) 349, 415, 880, 998, 1013, 1190, 1270
SspMI CTAG 2 cut(s) 80, 503
SstI GAGCTC 2 cut(s) 324, 717
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 134, 513, 889, 1130
TaiI ACGT 2 cut(s) 159, 378
TaqI TCGA 7 cut(s) 20, 44, 59, 305, 498, 564, 585
TaqII GACCGA 1 cut(s) 536
TasI AATT 7 cut(s) 349, 415, 880, 998, 1013, 1190, 1270
TauI GCSGC 8 cut(s) 129, 228, 413, 496, 914, 923, 934, 1122
TfiI GAWTC 9 cut(s) 243, 313, 333, 395, 606, 656, 745, 1019, 1313
Tru1I TTAA 2 cut(s) 372, 776
Tru9I TTAA 2 cut(s) 372, 776
TscAI CASTG 6 cut(s) 274, 445, 632, 955, 975, 1050
TseFI GTSAC 2 cut(s) 1045, 1130
TseI GCWGC 4 cut(s) 529, 666, 923, 953
Tsp45I GTSAC 2 cut(s) 1045, 1130
TspDTI ATGAA 2 cut(s) 419, 691
TspGWI ACGGA 2 cut(s) 396, 1060
TspRI CASTG 6 cut(s) 274, 445, 632, 955, 975, 1050
Tth111I GACNNNGTC 1 cut(s) 64
VpaK11BI GGWCC 4 cut(s) 213, 219, 249, 1102
XapI RAATTY 3 cut(s) 415, 880, 1270
XbaI TCTAGA 1 cut(s) 502
XmiI GTMKAC 2 cut(s) 585, 891
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 2 cut(s) 80, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.