Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Forward (+)

2248967 .. 2250529

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTTCTTCTGCAACAGCACCAAATTCGCTATCTTTCTTCTCATCTTCTCTCTTTTTATCCTCCTCTCACCAAATCCCTAAAACCTACATTTCCGTTTCAAAACTCGGCTCCGGCAGAGTCTCGAAGCCGCTTTCTGTCTCTTCCCAGCTAGCGACTCTACCGATTCTATCATTCGAAGGAGAGAAGGTCGGAGAGACGTATCTAGACCTCAAAGCGGCGCCGGAGGATACCGCGCGTGCCGTTGTGCACCGAGCCATCGTGACGGACCTGAATAACAAGCGGCGAGGTACTGCTTCCACACTGACTCGCGGTGAAGTTCGTGGTGGTGGAATTAAACCTTACTCACAGAAGAAAACTGGCCACGCGAGGCGTGGATCTCAGAGAACACCGTTACGTCCCGGTGGAGGTGTGGTGTTTGGGCCAAGACCTAAGGATTGGTCAATTAAAATCAATAGGAAGGAGAAGAAGCTAGCGATATCTACGGCGTTATCGAGTGCGGCATCTGCGGAAGGTGGTGCGATAGTGGTGGAGGAATTTGGGGAGAAGTTTGAGAAGCCCAAGACTAAAGATTTCTTAGCTGCGATGCAAAGGTGGGGATTGGATCCCAAGGAGAAAGCTATGTTCTTGATGATTGATGTGGATGAGAATGTGGCGAAATCGAGTAGGAACATTGGAACCTTGAGGATGTTGACGCCTAGGACACTGAATCTGTTTGATATTTTGAACGCTGATAAGCTTGTTCTGACTCCTGCGGCTGTGGAGTTCTTGAATGCGAGGTACGGTGTTGATGCGGTGGAGGAAGAAGATGACGATGAAGATGAGACGGAAGGGTCAGAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

282

Amino Acids

30.56

Weight (kDa)

8.92

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	76 - 259	3.3e-57	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	220
AccII	CGCG	4 cut(s)	236, 238, 312, 368
AciI	CCGC	9 cut(s)	131, 218, 234, 283, 312, 500, 509, 755, 794
AclWI	GGATC	3 cut(s)	385, 599, 612
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	25, 536
AcyI	GRCGYC	2 cut(s)	221, 695
AfaI	GTAC	2 cut(s)	292, 782
AfiI	CCNNNNNNNGG	2 cut(s)	217, 407
AgsI	TTSAA	3 cut(s)	102, 727, 772
AluBI	AGCT	6 cut(s)	151, 472, 581, 620, 739, 845
AluI	AGCT	6 cut(s)	151, 472, 581, 620, 739, 845
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	4 cut(s)	127, 145, 191, 818
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	3 cut(s)	385, 599, 612
AoxI	GGCC	2 cut(s)	361, 422
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	25, 536
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	223, 238
AspS9I	GGNCC	2 cut(s)	268, 422
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	62, 326
AsuII	TTCGAA	1 cut(s)	177
AsuNHI	GCTAGC	2 cut(s)	151, 472
AvaII	GGWCC	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	227, 501
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciVI	GTATCC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	4 cut(s)	127, 145, 191, 818
BfaI	CTAG	4 cut(s)	152, 206, 473, 699
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	6 cut(s)	131, 219, 284, 501, 582, 756
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	6 cut(s)	132, 220, 285, 502, 583, 757
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	268, 422
BmiI	GGNNCC	4 cut(s)	112, 222, 606, 679
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	512, 576, 781
BmtI	GCTAGC	2 cut(s)	155, 476
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	221, 695
BsaJI	CCNNGG	2 cut(s)	609, 698
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 407
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	609, 698
BseGI	GGATG	2 cut(s)	649, 693
BseLI	CCNNNNNNNGG	2 cut(s)	217, 407
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	568
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	4 cut(s)	236, 238, 312, 368
BshFI	GGCC	2 cut(s)	363, 424
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	114, 224, 402
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	217, 407
BsmAI	GTCTC	4 cut(s)	127, 145, 191, 818
BsmBI	CGTCTC	2 cut(s)	191, 818
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	363, 424
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	377, 604
BspACI	CCGC	9 cut(s)	131, 218, 234, 283, 312, 500, 509, 755, 794
BspANI	GGCC	2 cut(s)	363, 424
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	4 cut(s)	236, 238, 312, 368
BspLI	GGNNCC	4 cut(s)	112, 222, 606, 679
BspOI	GCTAGC	2 cut(s)	155, 476
BspPI	GGATC	3 cut(s)	385, 599, 612
BspT104I	TTCGAA	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	609, 698
BssMI	GATC	2 cut(s)	377, 604
BssNI	GRCGYC	2 cut(s)	221, 695
BssT1I	CCWWGG	2 cut(s)	609, 698
Bst4CI	ACNGT	2 cut(s)	393, 785
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	2 cut(s)	221, 695
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	153, 240, 474
BstDEI	CTNAG	3 cut(s)	381, 432, 577
BstF5I	GGATG	2 cut(s)	649, 693
BstFNI	CGCG	4 cut(s)	236, 238, 312, 368
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	223, 238
BstKTI	GATC	2 cut(s)	380, 607
BstMAI	GTCTC	4 cut(s)	127, 145, 191, 818
BstMBI	GATC	2 cut(s)	377, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 506
BstSCI	CCNGG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	4 cut(s)	236, 238, 312, 368
BstV1I	GCAGC	1 cut(s)	568
BstX2I	RGATCY	2 cut(s)	377, 604
BstYI	RGATCY	2 cut(s)	377, 604
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	363, 424
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	649, 693
BtsIMutI	CAGTG	2 cut(s)	302, 704
Cac8I	GCNNGC	3 cut(s)	153, 240, 474
CfoI	GCGC	2 cut(s)	223, 238
Cfr13I	GGNCC	2 cut(s)	268, 422
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	291, 781
CviQI	GTAC	2 cut(s)	291, 781
DdeI	CTNAG	3 cut(s)	381, 432, 577
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	379, 606
DpnII	GATC	2 cut(s)	377, 604
DrdI	GACNNNNNNGTC	1 cut(s)	832
DseDI	GACNNNNNNGTC	1 cut(s)	832
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	609, 698
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	609, 698
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	609, 698
Esp3I	CGTCTC	2 cut(s)	191, 818
FaiI	YATR	1 cut(s)	623
FaqI	GGGAC	1 cut(s)	384
Fnu4HI	GCNGC	6 cut(s)	131, 219, 284, 501, 582, 756
FokI	GGATG	2 cut(s)	656, 700
Fsp4HI	GCNGC	6 cut(s)	131, 219, 284, 501, 582, 756
FspBI	CTAG	4 cut(s)	152, 206, 473, 699
GlaI	GCGC	2 cut(s)	222, 237
GluI	GCNGC	6 cut(s)	131, 219, 284, 501, 582, 756
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	363, 424
HapII	CCGG	3 cut(s)	114, 224, 402
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	2 cut(s)	223, 238
Hin1I	GRCGYC	2 cut(s)	221, 695
Hin6I	GCGC	2 cut(s)	221, 236
HinP1I	GCGC	2 cut(s)	221, 236
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	2 cut(s)	737, 843
HinfI	GANTC	6 cut(s)	120, 157, 166, 307, 709, 748
HpaII	CCGG	3 cut(s)	114, 224, 402
HphI	GGTGA	2 cut(s)	62, 326
Hpy166II	GTNNAC	2 cut(s)	250, 693
Hpy188I	TCNGA	4 cut(s)	194, 384, 747, 838
Hpy188III	TCNNGA	5 cut(s)	124, 206, 262, 628, 769
Hpy8I	GTNNAC	2 cut(s)	250, 693
HpyAV	CCTTC	5 cut(s)	173, 181, 454, 506, 824
HpyCH4III	ACNGT	2 cut(s)	393, 785
HpyCH4IV	ACGT	2 cut(s)	200, 397
HpyCH4V	TGCA	3 cut(s)	14, 250, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 506
HpyF3I	CTNAG	3 cut(s)	381, 432, 577
HpySE526I	ACGT	2 cut(s)	200, 397
Hsp92I	GRCGYC	2 cut(s)	221, 695
HspAI	GCGC	2 cut(s)	221, 236
KasI	GGCGCC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	377, 604
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	127, 161, 237, 284, 345, 415, 765
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	3 cut(s)	512, 576, 781
MaeI	CTAG	4 cut(s)	152, 206, 473, 699
MaeII	ACGT	2 cut(s)	200, 397
MaeIII	GTNAC	2 cut(s)	262, 393
MalI	GATC	2 cut(s)	379, 606
MboI	GATC	2 cut(s)	377, 604
MboII	GAAGA	8 cut(s)	31, 39, 135, 364, 478, 815, 818, 830
MflI	RGATCY	2 cut(s)	377, 604
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	4 cut(s)	25, 333, 444, 536
MluNI	TGGCCA	1 cut(s)	363
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	4 cut(s)	129, 151, 301, 742
MmeI	TCCRAC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	3 cut(s)	336, 447, 847
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	3 cut(s)	114, 224, 402
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	778
MvnI	CGCG	4 cut(s)	236, 238, 312, 368
MwoI	GCNNNNNNNGC	2 cut(s)	11, 506
NarI	GGCGCC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	377, 604
NheI	GCTAGC	2 cut(s)	151, 472
NlaIV	GGNNCC	4 cut(s)	112, 222, 606, 679
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PctI	GAATGC	1 cut(s)	778
PfeI	GAWTC	2 cut(s)	166, 709
PkrI	GCNGC	6 cut(s)	132, 220, 285, 502, 583, 757
PleI	GAGTC	4 cut(s)	128, 151, 301, 742
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	4 cut(s)	128, 151, 301, 742
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	112, 222, 606, 679
PspPI	GGNCC	2 cut(s)	268, 422
PsuI	RGATCY	2 cut(s)	377, 604
RsaI	GTAC	2 cut(s)	292, 782
RsaNI	GTAC	2 cut(s)	291, 781
SaqAI	TTAA	3 cut(s)	336, 447, 847
SatI	GCNGC	6 cut(s)	131, 219, 284, 501, 582, 756
Sau3AI	GATC	2 cut(s)	377, 604
Sau96I	GGNCC	2 cut(s)	268, 422
SchI	GAGTC	4 cut(s)	129, 151, 301, 742
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	512, 576, 781
SfoI	GGCGCC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	4 cut(s)	25, 333, 444, 536
SsiI	CCGC	9 cut(s)	131, 218, 234, 283, 312, 500, 509, 755, 794
SspDI	GGCGCC	1 cut(s)	220
SspMI	CTAG	4 cut(s)	152, 206, 473, 699
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	609, 698
TaaI	ACNGT	2 cut(s)	393, 785
TaiI	ACGT	2 cut(s)	203, 400
TaqI	TCGA	4 cut(s)	125, 177, 494, 662
TasI	AATT	4 cut(s)	25, 333, 444, 536
TauI	GCSGC	5 cut(s)	133, 221, 286, 503, 758
TfiI	GAWTC	2 cut(s)	166, 709
Tru1I	TTAA	3 cut(s)	336, 447, 847
Tru9I	TTAA	3 cut(s)	336, 447, 847
TscAI	CASTG	2 cut(s)	309, 711
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	831
TspGWI	ACGGA	3 cut(s)	85, 281, 842
TspRI	CASTG	2 cut(s)	309, 711
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	25, 536
XbaI	TCTAGA	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	698
XspI	CTAG	4 cut(s)	152, 206, 473, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.