Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Reverse (-)

74615966 .. 74616683

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTGAAGCCGAAGACGACGGAGTTCATTGCGGCGATGAAGAGGTGGGAACTTGACCCCAAGGAGAAGACGACCTTCTTTATGCTGGAGGTTGCGGATAAGGTGAAGCTTTCCAGTAGGAATATTGGGACTTTGAAGATGTTGATCCCCAGGACGCTGAATCTGTTTGATATTTTTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

61

Amino Acids

7.17

Weight (kDa)

9.3

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	2 - 59	1.5e-06	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 95
AclWI	GGATC	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	136, 179
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AlwI	GGATC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	16, 115
BbsI	GAAGAC	2 cut(s)	20, 74
BciT130I	CCWGG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	20, 74
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	60, 149
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	60, 149
BseJI	GATNNNNATC	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	2 cut(s)	32, 95
BspPI	GGATC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	60, 149
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstV2I	GAAGAC	2 cut(s)	20, 74
BtgZI	GCGATG	1 cut(s)	50
CseI	GACGC	1 cut(s)	163
CviJI	RGCY	2 cut(s)	10, 109
CviKI_1	RGCY	2 cut(s)	10, 109
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaiI	YATR	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	16, 115
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	71, 127, 136, 163
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	25, 52, 79, 148
MnlI	CCTC	2 cut(s)	36, 82
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	5 cut(s)	47, 77, 93, 105, 111
SgeI	CNNG	6 cut(s)	65, 73, 98, 126, 162, 163
SsiI	CCGC	2 cut(s)	32, 95
SspI	AATATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	60
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	16, 53
TspGWI	ACGGA	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.