Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Forward (+)

6842664 .. 6845260

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1080100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGACTTCCGCAGCGTCCTTATCACTCTCCTTCTTCAACTCCTCAATCTTCCTCCCCTCCTCCTCCCACAAACCCCTCTCTGCCCTCGCACCGAAAAATTCTCTCAAAACCTCTAAACCCCTCTCCGTCTCCGCCGAGGTCGCCACCCTCCCAGTCCTCTCCTTCACGGGCGACAAAGTTGGGGAAACTTTCCTAGACCTCAAGTCCGCGCTCCCCGACACCGCGCGCGCCGTCGTCCACCGCGCCATCATCACCGACCTCCAGAACAAGCGCCGCGGCACAGCATCCACCCTCACCCGCGCGGAGGTCAGCGGAGGAGGGAGAAAACCTTACCCGCAGAAGAAGACGGGTCGGGCCCGCCAGGGGTCGACTCGAACCCCGCTACGACCCGGCGGAGGGGTCGTGTTCGGACCCAAGCCCAGGGATTGGAGCATCAAGATCAATCGGAAGGAGAAGCGGCTGGCGATTTCGACGGCGGTGGCGAGCGCCGCGGAGAACACGATCGTGGTGGAGGATTTCAGCGACGAGTTCGAGAAGCTTGAGAAGCCGAAGACGACGGAGTTTATAGCGGCGATGAAGCGGTGGGGTTTGGACCCGAAGGAGAAGACGACGTTTCTGGTGACGGAGGTGGCGAACAATGTGAGGCTTTCGAGCAGAAATATTGGGACTTTGAAGATGCTGACGCCGAGGACTTTGAATTTGTTTGACATTTTGAATGCGGATAAGCTGATCATGACGCCGGAGATTGTGGATTATCTGAATGCAAGGTACGGGGTTGATTACGACGGCGAGACAGAGGACGAGGAGGAGGAGGAAGAAGAAGGAGGAGTTGAAGGTGAAGGGACGGCAGCAGATGAGAGTTCTGATGCAGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

294

Amino Acids

31.79

Weight (kDa)

5.95

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	76 - 256	7.6e-57	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
AcsI	RAATTY	2 cut(s)	100, 700
AcyI	GRCGYC	2 cut(s)	686, 740
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	6 cut(s)	307, 366, 398, 399, 423, 429
AgsI	TTSAA	5 cut(s)	40, 676, 700, 718, 836
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	363, 422
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	2 cut(s)	541, 730
AluI	AGCT	2 cut(s)	541, 730
Alw26I	GTCTC	2 cut(s)	136, 788
AoxI	GGCC	1 cut(s)	357
ApaI	GGGCCC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	14, 851, 872
ApoI	RAATTY	2 cut(s)	100, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AspLEI	GCGC	8 cut(s)	214, 229, 231, 233, 248, 276, 305, 491
AspS9I	GGNCC	4 cut(s)	357, 358, 413, 595
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	4 cut(s)	247, 289, 634, 851
AvaII	GGWCC	2 cut(s)	413, 595
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	3 cut(s)	353, 560, 614
BbvI	GCAGC	2 cut(s)	26, 863
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	4 cut(s)	218, 492, 805, 864
BciT130I	CCWGG	2 cut(s)	365, 424
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	136, 788
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	2 cut(s)	277, 492
BisI	GCNGC	8 cut(s)	15, 277, 280, 461, 492, 573, 852, 873
BlsI	GCNGC	8 cut(s)	16, 278, 281, 462, 493, 574, 853, 874
Bme1390I	CCNGG	3 cut(s)	365, 393, 424
Bme18I	GGWCC	2 cut(s)	413, 595
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	4 cut(s)	357, 358, 413, 595
BmiI	GGNNCC	3 cut(s)	359, 415, 597
BmrFI	CCNGG	3 cut(s)	365, 393, 424
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	4 cut(s)	296, 444, 669, 859
BmuI	ACTGGG	1 cut(s)	149
BpiI	GAAGAC	3 cut(s)	353, 560, 614
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	188, 563
BpuMI	CCSGG	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	686, 740
BsaJI	CCNNGG	7 cut(s)	138, 277, 364, 422, 423, 492, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	6 cut(s)	307, 366, 398, 399, 423, 429
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	365, 424
BseDI	CCNNGG	7 cut(s)	138, 277, 364, 422, 423, 492, 689
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	6 cut(s)	307, 366, 398, 399, 423, 429
BseNI	ACTGG	1 cut(s)	155
BsePI	GCGCGC	2 cut(s)	227, 229
BseRI	GAGGAG	8 cut(s)	34, 52, 55, 333, 821, 824, 827, 843
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	26, 863
Bsh1236I	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	393, 743
BslFI	GGGAC	2 cut(s)	682, 859
BslI	CCNNNNNNNGG	6 cut(s)	307, 366, 398, 399, 423, 429
BsmAI	GTCTC	2 cut(s)	136, 788
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	682, 859
BsmI	GAATGC	2 cut(s)	724, 769
BsnI	GGCC	1 cut(s)	359
Bsp120I	GGGCCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	441, 504, 732
BspANI	GGCC	1 cut(s)	359
BspFNI	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	3 cut(s)	359, 415, 597
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	7 cut(s)	138, 277, 364, 422, 423, 492, 689
BssHII	GCGCGC	2 cut(s)	227, 229
BssMI	GATC	3 cut(s)	441, 504, 732
BssNI	GRCGYC	2 cut(s)	686, 740
Bst2UI	CCWGG	2 cut(s)	365, 424
BstACI	GRCGYC	2 cut(s)	686, 740
BstC8I	GCNNGC	5 cut(s)	229, 231, 361, 465, 487
BstDSI	CCRYGG	2 cut(s)	277, 492
BstF5I	GGATG	1 cut(s)	287
BstFNI	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
BstH2I	RGCGCY	2 cut(s)	277, 492
BstHHI	GCGC	8 cut(s)	214, 229, 231, 233, 248, 276, 305, 491
BstKTI	GATC	3 cut(s)	444, 507, 735
BstMAI	GTCTC	2 cut(s)	136, 788
BstMBI	GATC	3 cut(s)	441, 504, 732
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 143, 491, 547
BstNI	CCWGG	2 cut(s)	365, 424
BstSCI	CCNGG	3 cut(s)	363, 391, 422
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
BstV1I	GCAGC	2 cut(s)	26, 863
BstV2I	GAAGAC	3 cut(s)	353, 560, 614
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	277, 492
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	287
Cac8I	GCNNGC	5 cut(s)	229, 231, 361, 465, 487
CciI	TCATGA	1 cut(s)	735
CfoI	GCGC	8 cut(s)	214, 229, 231, 233, 248, 276, 305, 491
Cfr13I	GGNCC	4 cut(s)	357, 358, 413, 595
Cfr42I	CCGCGG	2 cut(s)	280, 495
CseI	GACGC	3 cut(s)	6, 694, 748
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	1 cut(s)	736
CviJI	RGCY	8 cut(s)	359, 421, 463, 541, 550, 649, 730, 875
CviKI_1	RGCY	8 cut(s)	359, 421, 463, 541, 550, 649, 730, 875
CviQI	GTAC	1 cut(s)	772
DpnI	GATC	3 cut(s)	443, 506, 734
DpnII	GATC	3 cut(s)	441, 504, 732
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	2 cut(s)	124, 411
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	413, 595
EcoRII	CCWGG	2 cut(s)	363, 422
EcoT38I	GRGCYC	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	739
FaiI	YATR	2 cut(s)	569, 737
FaqI	GGGAC	2 cut(s)	682, 859
FatI	CATG	1 cut(s)	735
FauI	CCCGC	4 cut(s)	308, 345, 368, 390
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	8 cut(s)	15, 277, 280, 461, 492, 573, 852, 873
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	8 cut(s)	15, 277, 280, 461, 492, 573, 852, 873
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	8 cut(s)	213, 228, 230, 232, 247, 275, 304, 490
GluI	GCNGC	8 cut(s)	15, 277, 280, 461, 492, 573, 852, 873
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	277, 492
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	393, 743
HgaI	GACGC	3 cut(s)	6, 694, 748
HhaI	GCGC	8 cut(s)	214, 229, 231, 233, 248, 276, 305, 491
Hin1I	GRCGYC	2 cut(s)	686, 740
Hin1II	CATG	1 cut(s)	739
Hin6I	GCGC	8 cut(s)	212, 227, 229, 231, 246, 274, 303, 489
HinP1I	GCGC	8 cut(s)	212, 227, 229, 231, 246, 274, 303, 489
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	393, 743
HphI	GGTGA	4 cut(s)	247, 289, 634, 851
Hpy166II	GTNNAC	2 cut(s)	241, 372
Hpy188I	TCNGA	4 cut(s)	413, 450, 762, 868
Hpy188III	TCNNGA	4 cut(s)	265, 439, 535, 736
Hpy8I	GTNNAC	2 cut(s)	241, 372
Hpy99I	CGWCG	6 cut(s)	239, 478, 530, 562, 616, 791
HpyAV	CCTTC	7 cut(s)	43, 175, 445, 595, 818, 830, 836
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	2 cut(s)	767, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 143, 491, 547
HpySE526I	ACGT	1 cut(s)	614
Hsp92I	GRCGYC	2 cut(s)	686, 740
Hsp92II	CATG	1 cut(s)	739
HspAI	GCGC	8 cut(s)	212, 227, 229, 231, 246, 274, 303, 489
Ksp22I	TGATCA	1 cut(s)	732
KspI	CCGCGG	2 cut(s)	280, 495
Kzo9I	GATC	3 cut(s)	441, 504, 732
LmnI	GCTCC	2 cut(s)	219, 432
Lsp1109I	GCAGC	2 cut(s)	26, 863
LweI	GCATC	4 cut(s)	296, 444, 669, 859
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	3 cut(s)	443, 506, 734
MauBI	CGCGCGCG	1 cut(s)	227
MboI	GATC	3 cut(s)	441, 504, 732
MboII	GAAGA	9 cut(s)	28, 43, 355, 358, 565, 619, 688, 830, 833
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	2 cut(s)	100, 700
MlyI	GAGTC	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	3 cut(s)	279, 315, 494
MspI	CCGG	2 cut(s)	393, 743
MspR9I	CCNGG	3 cut(s)	365, 393, 424
Mva1269I	GAATGC	2 cut(s)	724, 769
MvaI	CCWGG	2 cut(s)	365, 424
MvnI	CGCG	9 cut(s)	212, 227, 229, 231, 246, 279, 303, 305, 494
MwoI	GCNNNNNNNGC	4 cut(s)	11, 143, 491, 547
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	441, 504, 732
NlaIII	CATG	1 cut(s)	739
NlaIV	GGNNCC	3 cut(s)	359, 415, 597
NmeAIII	GCCGAG	2 cut(s)	163, 714
NmuCI	GTSAC	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	735
PasI	CCCWGGG	1 cut(s)	423
PauI	GCGCGC	2 cut(s)	227, 229
PcsI	WCGNNNNNNNCGW	2 cut(s)	482, 632
PctI	GAATGC	2 cut(s)	724, 769
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	16, 278, 281, 462, 493, 574, 853, 874
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	363, 422
PspGI	CCWGG	2 cut(s)	363, 422
PspN4I	GGNNCC	3 cut(s)	359, 415, 597
PspOMI	GGGCCC	1 cut(s)	357
PspPI	GGNCC	4 cut(s)	357, 358, 413, 595
PteI	GCGCGC	2 cut(s)	227, 229
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	1 cut(s)	506
SacII	CCGCGG	2 cut(s)	280, 495
SalI	GTCGAC	1 cut(s)	370
SatI	GCNGC	8 cut(s)	15, 277, 280, 461, 492, 573, 852, 873
Sau3AI	GATC	3 cut(s)	441, 504, 732
Sau96I	GGNCC	4 cut(s)	357, 358, 413, 595
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	365, 393, 424
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	4 cut(s)	296, 444, 669, 859
Sfr303I	CCGCGG	2 cut(s)	280, 495
SgrBI	CCGCGG	2 cut(s)	280, 495
SinI	GGWCC	2 cut(s)	413, 595
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	203, 542
SmoI	CTYRAG	2 cut(s)	203, 542
Sse9I	AATT	2 cut(s)	100, 700
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	363, 391, 422
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	5 cut(s)	371, 376, 473, 534, 653
TasI	AATT	2 cut(s)	100, 700
TauI	GCSGC	5 cut(s)	279, 282, 463, 494, 575
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	3 cut(s)	14, 851, 872
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	3 cut(s)	118, 575, 641
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	413, 595
XapI	RAATTY	2 cut(s)	100, 700
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.