Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Reverse (-)

32941747 .. 32942815

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTGGAGGATTTTAGTGATCAGTTTGAGAAGTTGGAGAAGCCGGAGACGATGAAGTTCATTGGGGCGATGAAGAGGTGGGGGATTGACCCGAAGGATTGTCCAACATTCTTTTCGATCTGGGTTTTGCCAAGCTCGCAATTTTTCTACAACATTCTGTTTTGTATCTTGGAGTTTTTATATGTTATTGGATGTGAATTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

68

Amino Acids

8.13

Weight (kDa)

4.49

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	197
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	41
BseGI	GGATG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	19, 117
BssMI	GATC	2 cut(s)	19, 117
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	2 cut(s)	22, 120
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	19, 117
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	137
CviJI	RGCY	2 cut(s)	43, 135
CviKI_1	RGCY	2 cut(s)	43, 135
DpnI	GATC	2 cut(s)	21, 119
DpnII	GATC	2 cut(s)	19, 117
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	41
FaiI	YATR	4 cut(s)	181, 183, 203, 205
FbaI	TGATCA	1 cut(s)	19
HapII	CCGG	1 cut(s)	44
HpaII	CCGG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 117
LpnPI	CCDG	2 cut(s)	57, 106
MalI	GATC	2 cut(s)	21, 119
MboI	GATC	2 cut(s)	19, 117
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	2 cut(s)	140, 197
MmeI	TCCRAC	2 cut(s)	15, 128
MnlI	CCTC	1 cut(s)	69
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	19, 117
Sau3AI	GATC	2 cut(s)	19, 117
SetI	ASST	2 cut(s)	80, 137
SgeI	CNNG	6 cut(s)	56, 103, 133, 144, 148, 181
Sse9I	AATT	2 cut(s)	140, 197
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	140, 197
TspDTI	ATGAA	3 cut(s)	49, 68, 86
XapI	RAATTY	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.