Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Forward (+)

5175218 .. 5175787

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGACCTCCGCAGCGCCCTCATCGCTCTCCTTCTTCAACTCCTCAATCTTCCTCCCCTCCTCCTCCCAAAAACCCCTCTCTGCCCTCGCACCGAAAAATTCTCTCAAAACCTCTAAACCCCTCTCCGTCTCCGCCGAGCTCGCCACCCTCCCGGTCCTCTCTTTCACTGCGACAAAGTTGGGGAAACTTTCCTCGACCTCAAGTCCGCGCTCCCCGACACCGCGCGCGCCGTCGTCCACCGCGCCATCATCACCGACCTCCAGAACAAGCGCCGCGGCACAGCATCCACCCTCACCCGCGCGGAGGTCAGCGGAGGAGGGAGAAAACCTTACCCGCAGAAGAAGACGGGTCGGGCCCGCCAGGGGTCGACTCGAACCCCGCTACGACCCGGCGGAGGGGTCGTGTTCGGACCCAAGCCCAGGGATTGGAGCATCAAGATCGATCGGAAGGAGAAGCGGCTGGCGATTTCGACGGCGGTGGCGAGCGCCGCGGAGAACACGATCGTGGTGGAGGATTTCAGCGACGAGTTCGAGAAGCTTGAGAAGCCGAAGACGACGGAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

190

Amino Acids

20.55

Weight (kDa)

12.0

Isoelectric Point (pI)

113.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
AcsI	RAATTY	1 cut(s)	100
AfiI	CCNNNNNNNGG	6 cut(s)	306, 365, 397, 398, 422, 428
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	204
AjnI	CCWGG	2 cut(s)	362, 421
AleI	CACNNNNGTG	1 cut(s)	505
AluBI	AGCT	2 cut(s)	142, 540
AluI	AGCT	2 cut(s)	142, 540
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	356
ApaI	GGGCCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	9 cut(s)	19, 213, 228, 230, 232, 247, 275, 304, 490
AspS9I	GGNCC	4 cut(s)	157, 356, 357, 412
AsuC2I	CCSGG	2 cut(s)	155, 392
AsuHPI	GGTGA	2 cut(s)	246, 288
AvaII	GGWCC	2 cut(s)	157, 412
BaeGI	GKGCMC	1 cut(s)	360
BanII	GRGCYC	2 cut(s)	144, 360
BbsI	GAAGAC	2 cut(s)	352, 559
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	2 cut(s)	217, 491
BcgI	CGANNNNNNTGC	2 cut(s)	423, 457
BciT130I	CCWGG	2 cut(s)	364, 423
BcnI	CCSGG	2 cut(s)	155, 392
BcoDI	GTCTC	1 cut(s)	136
BfoI	RGCGCY	3 cut(s)	20, 276, 491
BisI	GCNGC	5 cut(s)	15, 276, 279, 460, 491
BlsI	GCNGC	5 cut(s)	16, 277, 280, 461, 492
Bme1390I	CCNGG	4 cut(s)	155, 364, 392, 423
Bme18I	GGWCC	2 cut(s)	157, 412
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	157, 356, 357, 412
BmiI	GGNNCC	2 cut(s)	358, 414
BmrFI	CCNGG	4 cut(s)	155, 364, 392, 423
BmsI	GCATC	2 cut(s)	295, 443
BpiI	GAAGAC	2 cut(s)	352, 559
BpmI	CTGGAG	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	187, 562
BpuMI	CCSGG	2 cut(s)	155, 392
Bsa29I	ATCGAT	1 cut(s)	443
BsaJI	CCNNGG	5 cut(s)	276, 363, 421, 422, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	6 cut(s)	306, 365, 397, 398, 422, 428
BseBI	CCWGG	2 cut(s)	364, 423
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	5 cut(s)	276, 363, 421, 422, 491
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	6 cut(s)	306, 365, 397, 398, 422, 428
BsePI	GCGCGC	2 cut(s)	226, 228
BseRI	GAGGAG	4 cut(s)	34, 52, 55, 332
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
Bsh1285I	CGRYCG	2 cut(s)	447, 506
BshFI	GGCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	443
BsiEI	CGRYCG	2 cut(s)	447, 506
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	155, 392
BslI	CCNNNNNNNGG	6 cut(s)	306, 365, 397, 398, 422, 428
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	358
Bsp120I	GGGCCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	144, 360
Bsp143I	GATC	3 cut(s)	440, 444, 503
BspANI	GGCC	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
BspLI	GGNNCC	2 cut(s)	358, 414
BssECI	CCNNGG	5 cut(s)	276, 363, 421, 422, 491
BssHII	GCGCGC	2 cut(s)	226, 228
BssMI	GATC	3 cut(s)	440, 444, 503
Bst2UI	CCWGG	2 cut(s)	364, 423
BstC8I	GCNNGC	6 cut(s)	144, 228, 230, 360, 464, 486
BstDSI	CCRYGG	2 cut(s)	276, 491
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
BstH2I	RGCGCY	3 cut(s)	20, 276, 491
BstHHI	GCGC	9 cut(s)	19, 213, 228, 230, 232, 247, 275, 304, 490
BstKTI	GATC	3 cut(s)	443, 447, 506
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	440, 444, 503
BstMCI	CGRYCG	2 cut(s)	447, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 25, 143, 490, 546
BstNI	CCWGG	2 cut(s)	364, 423
BstSCI	CCNGG	4 cut(s)	153, 362, 390, 421
BstSLI	GKGCMC	1 cut(s)	360
BstUI	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	352, 559
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	2 cut(s)	276, 491
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	6 cut(s)	144, 228, 230, 360, 464, 486
CfoI	GCGC	9 cut(s)	19, 213, 228, 230, 232, 247, 275, 304, 490
Cfr13I	GGNCC	4 cut(s)	157, 356, 357, 412
Cfr42I	CCGCGG	2 cut(s)	279, 494
ClaI	ATCGAT	1 cut(s)	443
CviJI	RGCY	6 cut(s)	142, 358, 420, 462, 540, 549
CviKI_1	RGCY	6 cut(s)	142, 358, 420, 462, 540, 549
DpnI	GATC	3 cut(s)	442, 446, 505
DpnII	GATC	3 cut(s)	440, 444, 503
DriI	GACNNNNNGTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EciI	GGCGGA	2 cut(s)	124, 410
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	144, 360
Eco47I	GGWCC	2 cut(s)	157, 412
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	362, 421
EcoT38I	GRGCYC	2 cut(s)	144, 360
Esp3I	CGTCTC	1 cut(s)	136
FaiI	YATR	1 cut(s)	568
FauI	CCCGC	4 cut(s)	307, 344, 367, 389
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	15, 276, 279, 460, 491
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	2 cut(s)	144, 360
Fsp4HI	GCNGC	5 cut(s)	15, 276, 279, 460, 491
GlaI	GCGC	9 cut(s)	18, 212, 227, 229, 231, 246, 274, 303, 489
GluI	GCNGC	5 cut(s)	15, 276, 279, 460, 491
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	3 cut(s)	20, 276, 491
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	2 cut(s)	155, 392
HhaI	GCGC	9 cut(s)	19, 213, 228, 230, 232, 247, 275, 304, 490
Hin6I	GCGC	9 cut(s)	17, 211, 226, 228, 230, 245, 273, 302, 488
HinP1I	GCGC	9 cut(s)	17, 211, 226, 228, 230, 245, 273, 302, 488
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	155, 392
HphI	GGTGA	2 cut(s)	246, 288
Hpy166II	GTNNAC	2 cut(s)	240, 371
Hpy188I	TCNGA	2 cut(s)	412, 449
Hpy188III	TCNNGA	3 cut(s)	264, 438, 534
Hpy8I	GTNNAC	2 cut(s)	240, 371
Hpy99I	CGWCG	4 cut(s)	238, 477, 529, 561
HpyAV	CCTTC	2 cut(s)	43, 444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 25, 143, 490, 546
HspAI	GCGC	9 cut(s)	17, 211, 226, 228, 230, 245, 273, 302, 488
KspI	CCGCGG	2 cut(s)	279, 494
Kzo9I	GATC	3 cut(s)	440, 444, 503
LmnI	GCTCC	2 cut(s)	218, 431
LpnPI	CCDG	8 cut(s)	168, 277, 349, 376, 405, 408, 435, 448
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	295, 443
MalI	GATC	3 cut(s)	442, 446, 505
MauBI	CGCGCGCG	1 cut(s)	226
MboI	GATC	3 cut(s)	440, 444, 503
MboII	GAAGA	5 cut(s)	28, 43, 354, 357, 564
MhlI	GDGCHC	2 cut(s)	144, 360
MluCI	AATT	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	505
MspA1I	CMGCKG	3 cut(s)	278, 314, 493
MspI	CCGG	2 cut(s)	155, 392
MspR9I	CCNGG	4 cut(s)	155, 364, 392, 423
MvaI	CCWGG	2 cut(s)	364, 423
MvnI	CGCG	9 cut(s)	211, 226, 228, 230, 245, 278, 302, 304, 493
MwoI	GCNNNNNNNGC	5 cut(s)	11, 25, 143, 490, 546
NciI	CCSGG	2 cut(s)	155, 392
NdeII	GATC	3 cut(s)	440, 444, 503
NlaIV	GGNNCC	2 cut(s)	358, 414
NmeAIII	GCCGAG	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	505
PasI	CCCWGGG	1 cut(s)	422
PauI	GCGCGC	2 cut(s)	226, 228
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	5 cut(s)	16, 277, 280, 461, 492
Ple19I	CGATCG	2 cut(s)	447, 506
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	362, 421
PspGI	CCWGG	2 cut(s)	362, 421
PspN4I	GGNNCC	2 cut(s)	358, 414
PspOMI	GGGCCC	1 cut(s)	356
PspPI	GGNCC	4 cut(s)	157, 356, 357, 412
PteI	GCGCGC	2 cut(s)	226, 228
PvuI	CGATCG	2 cut(s)	447, 506
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	2 cut(s)	279, 494
SalI	GTCGAC	1 cut(s)	369
SatI	GCNGC	5 cut(s)	15, 276, 279, 460, 491
Sau3AI	GATC	3 cut(s)	440, 444, 503
Sau96I	GGNCC	4 cut(s)	157, 356, 357, 412
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	4 cut(s)	155, 364, 392, 423
SduI	GDGCHC	2 cut(s)	144, 360
SetI	ASST	8 cut(s)	11, 116, 144, 203, 263, 311, 333, 542
SfaNI	GCATC	2 cut(s)	295, 443
Sfr303I	CCGCGG	2 cut(s)	279, 494
SgrBI	CCGCGG	2 cut(s)	279, 494
SinI	GGWCC	2 cut(s)	157, 412
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	202, 541
SmoI	CTYRAG	2 cut(s)	202, 541
Sse9I	AATT	1 cut(s)	100
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	153, 362, 390, 421
TaqI	TCGA	6 cut(s)	197, 370, 375, 443, 472, 533
TasI	AATT	1 cut(s)	100
TauI	GCSGC	4 cut(s)	278, 281, 462, 493
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	157, 412
XapI	RAATTY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.